MD10G1056600.v1.1

oligopeptide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0006947
Physical Location & Seq
Reverse (-)
7735530 .. 7736386
857 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1056600.v1.1.491

Sequence Viewer

Length: 276 bp
ATGGCCGAAGTCCTCCCAACGAAAACGTTCCACGTACCCGGATTCGGGTCCCGGACGTTTTCGTTGAATCCGGGTCCTTTTAACGTAAAAGAGCACGTGCTGATTACCATATTTGCTAATGCCGGAAGTGCTTTTGGAGCTGGCTCAGCTTATGCTGTTGGGATTGTTAACATAATCAAAGCGTTTTATCACTGGAAAATCTCTCTTCTGGCTGGTTGGCTGCTTATCATCACAACCCAGGTATTGGGATACGGCTGGGCTGGGCTGGGCTTTTAA

Protein Analysis

92

Amino Acids

9.74

Weight (kDa)

9.6

Isoelectric Point (pI)

26.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 4 - 89 5.9e-15 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 244
AclI AACGTT 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 97
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 3 cut(s) 44, 45, 244
AgsI TTSAA 1 cut(s) 67
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 2 cut(s) 140, 149
AluI AGCT 2 cut(s) 140, 149
Alw21I GWGCWC 1 cut(s) 96
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 220
Asp700I GAANNNNTTC 1 cut(s) 26
AspS9I GGNCC 2 cut(s) 48, 74
AsuC2I CCSGG 3 cut(s) 39, 52, 72
AvaII GGWCC 2 cut(s) 48, 74
BbrPI CACGTG 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 207
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 239
BciVI GTATCC 1 cut(s) 242
BcnI CCSGG 3 cut(s) 39, 52, 72
BfuI GTATCC 1 cut(s) 242
BisI GCNGC 1 cut(s) 221
BlpI GCTNAGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 4 cut(s) 39, 52, 72, 239
Bme18I GGWCC 2 cut(s) 48, 74
BmgT120I GGNCC 2 cut(s) 48, 74
BmiI GGNNCC 3 cut(s) 49, 50, 75
BmrFI CCNGG 4 cut(s) 39, 52, 72, 239
Bpu1102I GCTNAGC 1 cut(s) 145
BpuMI CCSGG 3 cut(s) 39, 52, 72
BsaAI YACGTR 2 cut(s) 34, 97
BsaJI CCNNGG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 45, 244
Bse1I ACTGG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 237
BseLI CCNNNNNNNGG 3 cut(s) 44, 45, 244
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 207
BseYI CCCAGC 3 cut(s) 255, 260, 265
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 4 cut(s) 39, 52, 71, 123
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 3 cut(s) 44, 45, 244
BsmFI GGGAC 1 cut(s) 34
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1720I GCTNAGC 1 cut(s) 145
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 158
BspLI GGNNCC 3 cut(s) 49, 50, 75
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 210
BstBAI YACGTR 2 cut(s) 34, 97
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 145
BstMWI GCNNNNNNNGC 3 cut(s) 128, 137, 146
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 4 cut(s) 37, 50, 70, 237
BstV1I GCAGC 1 cut(s) 207
BsuI GTATCC 1 cut(s) 242
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 48, 74
Csp6I GTAC 1 cut(s) 35
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco47I GGWCC 2 cut(s) 48, 74
Eco72I CACGTG 1 cut(s) 97
EcoO109I RGGNCCY 2 cut(s) 48, 74
EcoRII CCWGG 1 cut(s) 237
FaiI YATR 3 cut(s) 110, 153, 173
FaqI GGGAC 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 221
GluI GCNGC 1 cut(s) 221
GsaI CCCAGC 3 cut(s) 259, 264, 269
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 39, 52, 71, 123
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 2 cut(s) 42, 67
HpaI GTTAAC 1 cut(s) 169
HpaII CCGG 4 cut(s) 39, 52, 71, 123
Hpy166II GTNNAC 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 169
HpyCH4IV ACGT 5 cut(s) 26, 33, 56, 84, 96
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 137, 146
HpyF3I CTNAG 1 cut(s) 145
HpySE526I ACGT 5 cut(s) 26, 33, 56, 84, 96
KflI GGGWCCC 1 cut(s) 48
KspAI GTTAAC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 137
Lsp1109I GCAGC 1 cut(s) 207
MaeII ACGT 5 cut(s) 26, 33, 56, 84, 96
MboII GAAGA 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 96
MnlI CCTC 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 3 cut(s) 81, 168, 274
MspI CCGG 4 cut(s) 39, 52, 71, 123
MspR9I CCNGG 4 cut(s) 39, 52, 72, 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 128, 137, 146
NciI CCSGG 3 cut(s) 39, 52, 72
NlaIV GGNNCC 3 cut(s) 49, 50, 75
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 42, 67
PflMI CCANNNNNTGG 1 cut(s) 244
PfoI TCCNGGA 1 cut(s) 50
PkrI GCNGC 1 cut(s) 222
PmaCI CACGTG 1 cut(s) 97
PmlI CACGTG 1 cut(s) 97
Ppu21I YACGTR 2 cut(s) 34, 97
PpuMI RGGWCCY 2 cut(s) 48, 74
Psp1406I AACGTT 1 cut(s) 26
Psp5II RGGWCCY 2 cut(s) 48, 74
Psp6I CCWGG 1 cut(s) 237
PspCI CACGTG 1 cut(s) 97
PspFI CCCAGC 3 cut(s) 255, 260, 265
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 49, 50, 75
PspPI GGNCC 2 cut(s) 48, 74
PspPPI RGGWCCY 2 cut(s) 48, 74
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SaqAI TTAA 3 cut(s) 81, 168, 274
SatI GCNGC 1 cut(s) 221
Sau96I GGNCC 2 cut(s) 48, 74
ScrFI CCNGG 4 cut(s) 39, 52, 72, 239
SduI GDGCHC 1 cut(s) 96
SetI ASST 8 cut(s) 29, 36, 59, 87, 99, 142, 151, 243
SinI GGWCC 2 cut(s) 48, 74
StyD4I CCNGG 4 cut(s) 37, 50, 70, 237
TaiI ACGT 5 cut(s) 29, 36, 59, 87, 99
TfiI GAWTC 2 cut(s) 42, 67
Tru1I TTAA 3 cut(s) 81, 168, 274
Tru9I TTAA 3 cut(s) 81, 168, 274
TscAI CASTG 1 cut(s) 197
TseI GCWGC 1 cut(s) 220
TspRI CASTG 1 cut(s) 197
Van91I CCANNNNNTGG 1 cut(s) 244
VpaK11BI GGWCC 2 cut(s) 48, 74
XmnI GAANNNNTTC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.