FvH4_6g50680

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009012
Physical Location & Seq
Forward (+)
37680082 .. 37682191
2110 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50680.t2

Sequence Viewer

Length: 834 bp
ATGAAAAGCGAAACCCAACAAGTATCATCTAAAGACAAAAACGGAGAAGAAAAGCATGGCATCTCAGAAAAGTCATATTCACCTCCTCTCAGTCCTCTAATATTCCCCCAAACCCATAACAAGCACTCCCCATCTCCATCTTCATCACCCTTACACGATTCATCTCCAAGTCATGAAGAAATCTACCACACCAATGAGTTCAGACTCACACCACCGGAGGAGCAGACCCACCACCACTCTAAGTTTGCGCCGCCACCGGCCGTGGCGGCCCAAACGAAAGACCAAGAGGGGGGGGGAGAGGCTCAAGAAGGAGTAGATAGGAAAACTTTGAGACCCTCTTTGTCGATATTGAAGAGGGCGAGAAGGCAAAGCTTGGTGAGGAGGGCTATGTTGGGGTTAAGGATTTCGGGAATTTTGTTTTGTATGATCTCTTTCTCGGTTATGGCGGCGGACAAGAAGCAGGGTTGGGCTTCAGATTCTTTCTCTAACTACAAGGAGTTCAGGTACTGCTTGGCAGTGAATGTGCTAGGTTTTGTGTATTCAGGGATTCAAACCTATGATTTAGTGTATTACTTCACCACGGGAAAACATGTAGTACAGCACCATCTCCGTTACTACTTCGATTTCTTGATGGATCAGATTTTGACCTACCTTGTGATATCGGCATCTTCATCGGCGGCGACTCGGGTGGAAGATTGGGAGTCGAATTGGGGCAAAGACAAGTTCCCTGATATGGCACGAGCGTCTGTGGCATTGTCCTTCCTTGCCTTCTTTGCATTTGCCTCTAGCTCTCTCATTTCTGGTTACACCCTCTGTACTCTGAAATCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

278

Amino Acids

31.15

Weight (kDa)

8.62

Isoelectric Point (pI)

57.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 125 - 214 4.6e-19 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 251, 266, 446, 449, 677
AclWI GGATC 1 cut(s) 642
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 1 cut(s) 411
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 3 cut(s) 506, 597, 817
AfiI CCNNNNNNNGG 2 cut(s) 289, 733
AflIII ACRYGT 1 cut(s) 589
AgsI TTSAA 2 cut(s) 352, 551
AluBI AGCT 2 cut(s) 372, 789
AluI AGCT 2 cut(s) 372, 789
Alw26I GTCTC 1 cut(s) 325
AlwI GGATC 1 cut(s) 642
AlwNI CAGNNNCTG 1 cut(s) 507
Ama87I CYCGRG 1 cut(s) 684
AoxI GGCC 2 cut(s) 258, 267
ApoI RAATTY 1 cut(s) 411
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 4 cut(s) 72, 138, 388, 568
AvaI CYCGRG 1 cut(s) 684
BauI CACGAG 1 cut(s) 738
BccI CCATC 4 cut(s) 139, 145, 612, 625
BceAI ACGGC 1 cut(s) 245
BcgI CGANNNNNNTGC 2 cut(s) 654, 688
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 2 cut(s) 527, 786
BglI GCCNNNNNGGC 1 cut(s) 266
BisI GCNGC 4 cut(s) 251, 267, 447, 678
BlsI GCNGC 4 cut(s) 252, 268, 448, 679
BmeT110I CYCGRG 1 cut(s) 684
BmgT120I GGNCC 1 cut(s) 268
BmsI GCATC 2 cut(s) 69, 674
BpuEI CTTGAG 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 261, 579
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 488, 518
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 733
Bse118I RCCGGY 1 cut(s) 256
BseDI CCNNGG 2 cut(s) 261, 579
BseLI CCNNNNNNNGG 2 cut(s) 289, 733
BseMII CTCAG 2 cut(s) 78, 103
BseRI GAGGAG 3 cut(s) 75, 233, 394
BseX3I CGGCCG 1 cut(s) 258
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 2 cut(s) 260, 269
BsiEI CGRYCG 1 cut(s) 261
BsiHKCI CYCGRG 1 cut(s) 684
BsiSI CCGG 2 cut(s) 215, 257
BslI CCNNNNNNNGG 2 cut(s) 289, 733
BsmAI GTCTC 1 cut(s) 325
BsnI GGCC 2 cut(s) 260, 269
Bso31I GGTCTC 1 cut(s) 325
BsoBI CYCGRG 1 cut(s) 684
Bsp143I GATC 2 cut(s) 426, 634
BspACI CCGC 5 cut(s) 251, 266, 446, 449, 677
BspANI GGCC 2 cut(s) 260, 269
BspCNI CTCAG 2 cut(s) 77, 102
BspHI TCATGA 1 cut(s) 172
BspPI GGATC 1 cut(s) 642
BspTNI GGTCTC 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 261, 579
BssMI GATC 2 cut(s) 426, 634
BssSI CACGAG 1 cut(s) 738
Bst2BI CACGAG 1 cut(s) 738
Bst6I CTCTTC 1 cut(s) 347
BstDEI CTNAG 3 cut(s) 64, 89, 240
BstDSI CCRYGG 2 cut(s) 261, 579
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 2 cut(s) 429, 637
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 2 cut(s) 426, 634
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 3 cut(s) 266, 749, 773
BstNSI RCATGY 1 cut(s) 593
BstZI CGGCCG 1 cut(s) 258
BsuRI GGCC 2 cut(s) 260, 269
BtgI CCRYGG 2 cut(s) 261, 579
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 522
CaiI CAGNNNCTG 1 cut(s) 507
CciI TCATGA 1 cut(s) 172
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 268
CseI GACGC 1 cut(s) 732
Csp6I GTAC 3 cut(s) 505, 596, 816
CviAII CATG 3 cut(s) 56, 173, 590
CviJI RGCY 7 cut(s) 260, 269, 302, 372, 386, 470, 789
CviKI_1 RGCY 7 cut(s) 260, 269, 302, 372, 386, 470, 789
CviQI GTAC 3 cut(s) 505, 596, 816
DdeI CTNAG 3 cut(s) 64, 89, 240
DpnI GATC 2 cut(s) 428, 636
DpnII GATC 2 cut(s) 426, 634
EaeI YGGCCR 1 cut(s) 258
EagI CGGCCG 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 347
EarI CTCTTC 1 cut(s) 347
EciI GGCGGA 1 cut(s) 464
EclXI CGGCCG 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 325
Eco32I GATATC 1 cut(s) 660
Eco52I CGGCCG 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 684
EcoRV GATATC 1 cut(s) 660
FaeI CATG 3 cut(s) 59, 176, 593
FatI CATG 3 cut(s) 55, 172, 589
Fnu4HI GCNGC 4 cut(s) 251, 267, 447, 678
Fsp4HI GCNGC 4 cut(s) 251, 267, 447, 678
FspBI CTAG 2 cut(s) 527, 786
GlaI GCGC 1 cut(s) 249
GluI GCNGC 4 cut(s) 251, 267, 447, 678
HaeIII GGCC 2 cut(s) 260, 269
HapII CCGG 2 cut(s) 215, 257
HgaI GACGC 1 cut(s) 732
HhaI GCGC 1 cut(s) 250
Hin1II CATG 3 cut(s) 59, 176, 593
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HindIII AAGCTT 1 cut(s) 370
HinfI GANTC 6 cut(s) 158, 204, 476, 547, 682, 701
HpaII CCGG 2 cut(s) 215, 257
HphI GGTGA 4 cut(s) 72, 138, 388, 568
Hpy188I TCNGA 5 cut(s) 67, 203, 475, 639, 822
Hpy188III TCNNGA 4 cut(s) 173, 305, 408, 628
HpyAV CCTTC 4 cut(s) 302, 357, 769, 778
HpyCH4V TGCA 1 cut(s) 776
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 749, 773
HpyF3I CTNAG 3 cut(s) 64, 89, 240
Hsp92II CATG 3 cut(s) 59, 176, 593
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 2 cut(s) 426, 634
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 7 cut(s) 228, 270, 446, 487, 528, 741, 786
LweI GCATC 2 cut(s) 69, 674
MaeI CTAG 2 cut(s) 527, 786
MaeIII GTNAC 2 cut(s) 611, 803
MalI GATC 2 cut(s) 428, 636
MboI GATC 2 cut(s) 426, 634
MboII GAAGA 6 cut(s) 59, 132, 188, 364, 660, 704
MluCI AATT 2 cut(s) 411, 706
MlyI GAGTC 3 cut(s) 198, 676, 710
MseI TTAA 1 cut(s) 398
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 2 cut(s) 215, 257
MwoI GCNNNNNNNGC 3 cut(s) 266, 749, 773
NdeII GATC 2 cut(s) 426, 634
NlaIII CATG 3 cut(s) 59, 176, 593
NspI RCATGY 1 cut(s) 593
PagI TCATGA 1 cut(s) 172
PciI ACATGT 1 cut(s) 589
PfeI GAWTC 3 cut(s) 158, 476, 547
PkrI GCNGC 4 cut(s) 252, 268, 448, 679
PleI GAGTC 3 cut(s) 198, 676, 709
PpsI GAGTC 3 cut(s) 198, 676, 709
PscI ACATGT 1 cut(s) 589
PspPI GGNCC 1 cut(s) 268
PstNI CAGNNNCTG 1 cut(s) 507
RsaI GTAC 3 cut(s) 506, 597, 817
RsaNI GTAC 3 cut(s) 505, 596, 816
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 1 cut(s) 398
SatI GCNGC 4 cut(s) 251, 267, 447, 678
Sau3AI GATC 2 cut(s) 426, 634
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 3 cut(s) 198, 676, 710
SetI ASST 8 cut(s) 85, 374, 506, 532, 557, 650, 654, 791
SfaNI GCATC 2 cut(s) 69, 674
SfiI GGCCNNNNNGGCC 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 2 cut(s) 411, 706
SsiI CCGC 5 cut(s) 251, 266, 446, 449, 677
SspI AATATT 1 cut(s) 102
SspMI CTAG 2 cut(s) 527, 786
TaqI TCGA 3 cut(s) 344, 621, 704
TasI AATT 2 cut(s) 411, 706
TatI WGTACW 2 cut(s) 595, 815
TauI GCSGC 4 cut(s) 253, 269, 449, 680
TfiI GAWTC 3 cut(s) 158, 476, 547
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TscAI CASTG 1 cut(s) 522
TspDTI ATGAA 5 cut(s) 17, 132, 150, 189, 660
TspGWI ACGGA 2 cut(s) 57, 599
TspRI CASTG 1 cut(s) 522
XapI RAATTY 1 cut(s) 411
XceI RCATGY 1 cut(s) 593
XspI CTAG 2 cut(s) 527, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.