Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009012

Physical Location & Seq

Genomic Coordinates Forward (+)

88086477 .. 88088692

Gene Structure 2216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG656200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAAAAGAGAAACCCAACAAGAATCATCAAAAGACAAAGATGGAGAAGAAAAGCAAGGCATCTCAGAAAAGTCATATTCACCTCCTCTCAGTCCTCTAATATTCCCCCAAAACCATAACAAGTCCCCATCTCCATCTCCGTCTCCATCACCACTACATGATTCTTCTCCAGCTGAAGAAATCTACCACACCAATGAGTTCAGACTCACACCACCGGAGAATCAGACCCCCCACCACTCTAAGTCTGCGCCGCCACCGCCCGTGGAGGCCCAAACCAAAGCCCAAGAAGGGTTTGCTGCGCCAGGAGAGGCTCAAGAGGGAGGAGAGAATAGGAGAACTATGAGACCCTATTTGTCTATATTGAAGAGGGCGAGAAGGCAGAGCGTGGTGAGGAGGGCTATGTTGGGGTTAAGGATTTCTGAGTTTTTGTTTTGTTTGATCTCTTTCTCGGTTATGGCGGCCGACAAGAAGCAGGGTTGGGCTTCAGATTCTTTCTCTAACTACAAGGAGTTCAGGTACTGCTTGGCAGTGAATGTGCTAGGGTTTGTGTATTCAGGGATCCAGACCTATGATTTAGTCTATTACTTCACCACCGGAAAACATGTAGTGCAGCACCATCTCCGATATTACTTCGATTTCTTGATGGATCAGATTTTGACTTACCTTGTGATATCGGCATCTTCATCAGCAGCGACTCGGGTTGAAGATTGGGAGTCGAATTGGGGCAAAGACAAGTTCCCTGATATGGCACGAGCATCTGTGGCACTATCCTTCCTTGCCTTCTTTGCATTTGCCTCTAGCTCTCTCATCTCTGGTTACGCCCTATGTACTCTAAAATCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

281

Amino Acids

31.66

Weight (kDa)

8.31

Isoelectric Point (pI)

65.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	129 - 263	8.6e-34	Casparian strip membrane protein domain
MARVEL	PF01284	134 - 267	1.7e-12	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40300
fragaria_vesca	FvH4_6g50680 FvH4_6g50680 FvH4_6g50680 FvH4_6g50680
malus_domestica	MD09G1034100.v1.1
prunus_persica	Prupe.3G284200_v2.0.a1
pyrus_communis	pycom111g02710 pycom17g03190
rosa_chinensis	RchiOBHm_Chr2g0171451 RchiOBHm_Chr2g0171471
rosa_laevigata	RLG00000022015
rosa_multiflora	Rmu_sc0006783.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080640
rosa_rugosa	Rorug02G0554500
rosa_samantha	Rh2AG628700 Rh2BG639100 Rh2BG639400 Rh2CG607800 Rh2DG650200 Rh2DG656200
rosa_wichuraiana	Rw2G052080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	251, 257, 458
AclWI	GGATC	3 cut(s)	553, 566, 654
AcoI	YGGCCR	1 cut(s)	459
AcuI	CTGAAG	2 cut(s)	195, 468
AfaI	GTAC	2 cut(s)	518, 829
AfiI	CCNNNNNNNGG	2 cut(s)	288, 745
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	2 cut(s)	364, 704
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	2 cut(s)	173, 801
AluI	AGCT	2 cut(s)	173, 801
Alw26I	GTCTC	2 cut(s)	147, 337
AlwI	GGATC	3 cut(s)	553, 566, 654
AlwNI	CAGNNNCTG	1 cut(s)	519
Ama87I	CYCGRG	1 cut(s)	696
AoxI	GGCC	2 cut(s)	267, 459
ApeKI	GCWGC	3 cut(s)	296, 610, 689
AspLEI	GCGC	2 cut(s)	250, 301
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	4 cut(s)	72, 141, 400, 580
AvaI	CYCGRG	1 cut(s)	696
BamHI	GGATCC	1 cut(s)	558
BauI	CACGAG	1 cut(s)	750
BbvI	GCAGC	3 cut(s)	283, 622, 701
BccI	CCATC	6 cut(s)	35, 136, 142, 154, 624, 637
BciT130I	CCWGG	1 cut(s)	303
BcoDI	GTCTC	2 cut(s)	147, 337
BfaI	CTAG	2 cut(s)	539, 798
BisI	GCNGC	5 cut(s)	251, 297, 459, 611, 690
BlsI	GCNGC	5 cut(s)	252, 298, 460, 612, 691
Bme1390I	CCNGG	1 cut(s)	303
BmeT110I	CYCGRG	1 cut(s)	696
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	560
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	3 cut(s)	69, 686, 764
BpmI	CTGGAG	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	261
BsaWI	WCCGGW	2 cut(s)	214, 593
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 745
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	288, 745
BseMII	CTCAG	3 cut(s)	78, 103, 411
BseRI	GAGGAG	3 cut(s)	75, 336, 406
BseX3I	CGGCCG	1 cut(s)	459
BseXI	GCAGC	3 cut(s)	283, 622, 701
BsgI	GTGCAG	1 cut(s)	629
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	269, 461
BsiEI	CGRYCG	1 cut(s)	462
BsiHKCI	CYCGRG	1 cut(s)	696
BsiSI	CCGG	2 cut(s)	215, 594
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	288, 745
BsmAI	GTCTC	2 cut(s)	147, 337
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	269, 461
Bso31I	GGTCTC	1 cut(s)	337
BsoBI	CYCGRG	1 cut(s)	696
Bsp143I	GATC	3 cut(s)	438, 558, 646
BspACI	CCGC	3 cut(s)	251, 257, 458
BspANI	GGCC	2 cut(s)	269, 461
BspCNI	CTCAG	3 cut(s)	77, 102, 412
BspLI	GGNNCC	1 cut(s)	560
BspPI	GGATC	3 cut(s)	553, 566, 654
BspTNI	GGTCTC	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	438, 558, 646
BssSI	CACGAG	1 cut(s)	750
Bst2BI	CACGAG	1 cut(s)	750
Bst2UI	CCWGG	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	359
BstDEI	CTNAG	4 cut(s)	64, 89, 240, 420
BstDSI	CCRYGG	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	250, 301
BstKTI	GATC	3 cut(s)	441, 561, 649
BstMAI	GTCTC	2 cut(s)	147, 337
BstMBI	GATC	3 cut(s)	438, 558, 646
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 761, 785
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	301
BstV1I	GCAGC	3 cut(s)	283, 622, 701
BstX2I	RGATCY	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	558
BstZI	CGGCCG	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	269, 461
BtgI	CCRYGG	1 cut(s)	261
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
CaiI	CAGNNNCTG	1 cut(s)	519
CfoI	GCGC	2 cut(s)	250, 301
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	517, 828
CviAII	CATG	2 cut(s)	158, 602
CviJI	RGCY	8 cut(s)	173, 269, 281, 311, 398, 461, 482, 801
CviKI_1	RGCY	8 cut(s)	173, 269, 281, 311, 398, 461, 482, 801
CviQI	GTAC	2 cut(s)	517, 828
DdeI	CTNAG	4 cut(s)	64, 89, 240, 420
DpnI	GATC	3 cut(s)	440, 560, 648
DpnII	GATC	3 cut(s)	438, 558, 646
EaeI	YGGCCR	1 cut(s)	459
EagI	CGGCCG	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
EclXI	CGGCCG	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	337
Eco32I	GATATC	1 cut(s)	672
Eco52I	CGGCCG	1 cut(s)	459
Eco57I	CTGAAG	2 cut(s)	195, 468
Eco88I	CYCGRG	1 cut(s)	696
EcoRII	CCWGG	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	672
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	2 cut(s)	161, 605
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	157, 601
Fnu4HI	GCNGC	5 cut(s)	251, 297, 459, 611, 690
Fsp4HI	GCNGC	5 cut(s)	251, 297, 459, 611, 690
FspBI	CTAG	2 cut(s)	539, 798
GlaI	GCGC	2 cut(s)	249, 300
GluI	GCNGC	5 cut(s)	251, 297, 459, 611, 690
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	269, 461
HapII	CCGG	2 cut(s)	215, 594
HhaI	GCGC	2 cut(s)	250, 301
Hin1II	CATG	2 cut(s)	161, 605
Hin6I	GCGC	2 cut(s)	248, 299
HinP1I	GCGC	2 cut(s)	248, 299
HinfI	GANTC	7 cut(s)	23, 161, 204, 220, 488, 694, 713
HpaII	CCGG	2 cut(s)	215, 594
HphI	GGTGA	4 cut(s)	72, 141, 400, 580
Hpy188I	TCNGA	7 cut(s)	67, 203, 225, 421, 487, 623, 651
Hpy188III	TCNNGA	3 cut(s)	314, 562, 640
HpyAV	CCTTC	4 cut(s)	281, 369, 781, 790
HpyCH4V	TGCA	2 cut(s)	610, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 761, 785
HpyF3I	CTNAG	4 cut(s)	64, 89, 240, 420
Hsp92II	CATG	2 cut(s)	161, 605
HspAI	GCGC	2 cut(s)	248, 299
Kzo9I	GATC	3 cut(s)	438, 558, 646
Lsp1109I	GCAGC	3 cut(s)	283, 622, 701
LweI	GCATC	3 cut(s)	69, 686, 764
MaeI	CTAG	2 cut(s)	539, 798
MaeIII	GTNAC	1 cut(s)	815
MalI	GATC	3 cut(s)	440, 560, 648
MboI	GATC	3 cut(s)	438, 558, 646
MboII	GAAGA	6 cut(s)	59, 156, 188, 376, 672, 716
MflI	RGATCY	1 cut(s)	558
MluCI	AATT	1 cut(s)	718
MlyI	GAGTC	3 cut(s)	198, 688, 722
MseI	TTAA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	2 cut(s)	215, 594
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	3 cut(s)	256, 761, 785
NdeII	GATC	3 cut(s)	438, 558, 646
NlaIII	CATG	2 cut(s)	161, 605
NlaIV	GGNNCC	1 cut(s)	560
NspI	RCATGY	1 cut(s)	605
PciI	ACATGT	1 cut(s)	601
PfeI	GAWTC	4 cut(s)	23, 161, 220, 488
PkrI	GCNGC	5 cut(s)	252, 298, 460, 612, 691
PleI	GAGTC	3 cut(s)	198, 688, 721
PpsI	GAGTC	3 cut(s)	198, 688, 721
PscI	ACATGT	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	560
PspPI	GGNCC	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	519
PsuI	RGATCY	1 cut(s)	558
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	518, 829
RsaNI	GTAC	2 cut(s)	517, 828
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	5 cut(s)	251, 297, 459, 611, 690
Sau3AI	GATC	3 cut(s)	438, 558, 646
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	3 cut(s)	198, 688, 722
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	6 cut(s)	85, 175, 518, 569, 666, 803
SfaNI	GCATC	3 cut(s)	69, 686, 764
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	1 cut(s)	718
SsiI	CCGC	3 cut(s)	251, 257, 458
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	2 cut(s)	539, 798
StyD4I	CCNGG	1 cut(s)	301
TaqI	TCGA	2 cut(s)	633, 716
TasI	AATT	1 cut(s)	718
TatI	WGTACW	1 cut(s)	827
TauI	GCSGC	2 cut(s)	253, 461
TfiI	GAWTC	4 cut(s)	23, 161, 220, 488
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TscAI	CASTG	1 cut(s)	534
TseI	GCWGC	3 cut(s)	296, 610, 689
TspDTI	ATGAA	2 cut(s)	17, 672
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	534
XceI	RCATGY	1 cut(s)	605
XspI	CTAG	2 cut(s)	539, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.