Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0009012

Physical Location & Seq

Genomic Coordinates Reverse (-)

1628821 .. 1631112

Gene Structure 2292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAAACAATTCCAGAAGACCAACCAGAAACACCACCACAACGCAAAGAAGAAGAAAAACACAATGAAAAACAACAAGTGAAAGAGGAAGAAGAAGAAGAAGAAGAAGACAAGCAGAGCACCCCAGAAACACCATCTCCTCTGTTCCACTCACCATCTCATATGTTCCAAACTCCGTCTCCACCGTCCGATTCTCCAATAACCCATCATACCTACCACACTCATGAGCTCAGAGTCGCGCCTGCAGACACCAAGCCGGCGTCGCCGCCGCTGGCGCCTCCCCAGTCCTTCAGGGCCGAGCCCAAGGTTGCGGGACCCGATTCCAGAGATGGGTCTGATTGGACCCCGGAGGCTCGGGAAGAAAGTGGCGGTGGAATTGGCGGTGGTTCGGGTGTAAATATCCGAACTTTGAGACCCAAGTTGTCGATACTGAAGAGGTCGAGGAGGGAGAGCATGGTGAGGAGGGCTTTGTTTGGGTTAAGGATTTCTGGGTTTGTGTTGTGTTTGATATCTTTCTCGGTTATGGCGGCTGACAAGAGCCAAGGTTGGGCTCTAGATTCCTTCTATCGCTACAAGGAGTTCAGGTTCTGCTTGGCAGTGAATGTGATTGGATTTGTGTATTCAGGGCTGCAAACGTATGACTTAACCTATTTCTTCACCAGTGGAAAACATATAATCCAGCACCGGCTCCGCTATTACTTTGATTTCTTGTTGGATCAGATTTTGACGTACCTTTTGATGTCGGCGTCTTCATCGGCTGCGATTCGGGTCGACGACTGGGAGTCGAATTGGGGCAAAGACAAGTTCCCGGACATGGCTCGGGCATCCGTCGCATTGTCCTTCCTTGCCTTTATTGCCTTTGCCTCCAGCTCCCTCATCTCTGGTTACACCCTTTGTACTCTGAAATCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

305

Amino Acids

34.27

Weight (kDa)

5.89

Isoelectric Point (pI)

70.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40300
fragaria_vesca	FvH4_6g50680 FvH4_6g50680 FvH4_6g50680 FvH4_6g50680
malus_domestica	MD09G1034100.v1.1
prunus_persica	Prupe.3G284200_v2.0.a1
pyrus_communis	pycom111g02710 pycom17g03190
rosa_chinensis	RchiOBHm_Chr2g0171451 RchiOBHm_Chr2g0171471
rosa_laevigata	RLG00000022015
rosa_multiflora	Rmu_sc0006783.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080640
rosa_rugosa	Rorug02G0554500
rosa_samantha	Rh2AG628700 Rh2BG639100 Rh2BG639400 Rh2CG607800 Rh2DG650200 Rh2DG656200
rosa_wichuraiana	Rw2G052080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	771
AccII	CGCG	1 cut(s)	239
AciI	CCGC	7 cut(s)	266, 269, 311, 369, 381, 527, 691
AclWI	GGATC	1 cut(s)	723
AcuI	CTGAAG	2 cut(s)	274, 452
AcyI	GRCGYC	3 cut(s)	260, 275, 746
AfaI	GTAC	2 cut(s)	731, 898
AfiI	CCNNNNNNNGG	3 cut(s)	330, 547, 814
AhdI	GACNNNNNGTC	1 cut(s)	781
AloI	GAACNNNNNNTCC	2 cut(s)	569, 601
AluBI	AGCT	2 cut(s)	229, 870
AluI	AGCT	2 cut(s)	229, 870
Alw21I	GWGCWC	2 cut(s)	122, 231
Alw26I	GTCTC	2 cut(s)	183, 406
AlwI	GGATC	1 cut(s)	723
AlwNI	CAGNNNCTG	1 cut(s)	588
Ama87I	CYCGRG	2 cut(s)	354, 819
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	628, 758
ArsI	GACNNNNNNTTYG	2 cut(s)	718, 750
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	2 cut(s)	241, 277
AspS9I	GGNCC	3 cut(s)	294, 314, 342
AsuC2I	CCSGG	2 cut(s)	347, 809
AsuHPI	GGTGA	3 cut(s)	144, 469, 649
AvaI	CYCGRG	2 cut(s)	354, 819
AvaII	GGWCC	2 cut(s)	314, 342
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	3 cut(s)	231, 303, 553
BbsI	GAAGAC	3 cut(s)	24, 114, 741
Bbv12I	GWGCWC	2 cut(s)	122, 231
BbvI	GCAGC	2 cut(s)	615, 745
BccI	CCATC	4 cut(s)	142, 163, 213, 323
BcnI	CCSGG	2 cut(s)	347, 809
BcoDI	GTCTC	2 cut(s)	183, 406
BfaI	CTAG	1 cut(s)	554
BfmI	CTRYAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	278
BisI	GCNGC	5 cut(s)	266, 269, 528, 629, 759
BlsI	GCNGC	5 cut(s)	267, 270, 529, 630, 760
Bme1390I	CCNGG	2 cut(s)	347, 809
Bme18I	GGWCC	2 cut(s)	314, 342
BmeRI	GACNNNNNGTC	1 cut(s)	781
BmeT110I	CYCGRG	2 cut(s)	354, 819
BmgT120I	GGNCC	3 cut(s)	294, 314, 342
BmiI	GGNNCC	5 cut(s)	276, 315, 316, 344, 689
BmrFI	CCNGG	2 cut(s)	347, 809
BmrI	ACTGGG	2 cut(s)	277, 787
BmsI	GCATC	1 cut(s)	833
BmuI	ACTGGG	2 cut(s)	277, 787
BpiI	GAAGAC	3 cut(s)	24, 114, 741
BpmI	CTGGAG	1 cut(s)	850
BpuMI	CCSGG	2 cut(s)	347, 809
BsaHI	GRCGYC	3 cut(s)	260, 275, 746
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	3 cut(s)	303, 345, 541
BsaXI	ACNNNNNCTCC	6 cut(s)	121, 151, 163, 193, 569, 599
Bsc4I	CCNNNNNNNGG	3 cut(s)	330, 547, 814
Bse118I	RCCGGY	2 cut(s)	256, 684
Bse1I	ACTGG	3 cut(s)	283, 660, 782
BseDI	CCNNGG	3 cut(s)	303, 345, 541
BseGI	GGATG	1 cut(s)	824
BseLI	CCNNNNNNNGG	3 cut(s)	330, 547, 814
BseMII	CTCAG	1 cut(s)	244
BseNI	ACTGG	3 cut(s)	283, 660, 782
BseRI	GAGGAG	3 cut(s)	129, 457, 475
BseXI	GCAGC	2 cut(s)	615, 745
Bsh1236I	CGCG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	122, 231
BsiHKCI	CYCGRG	2 cut(s)	354, 819
BsiSI	CCGG	4 cut(s)	257, 347, 685, 809
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	3 cut(s)	330, 547, 814
BsmAI	GTCTC	2 cut(s)	183, 406
BsmBI	CGTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	327
BsnI	GGCC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	406
BsoBI	CYCGRG	2 cut(s)	354, 819
Bsp1286I	GDGCHC	4 cut(s)	122, 231, 303, 553
Bsp143I	GATC	1 cut(s)	715
BspACI	CCGC	7 cut(s)	266, 269, 311, 369, 381, 527, 691
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	5 cut(s)	276, 315, 316, 344, 689
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	1 cut(s)	723
BspT107I	GGYRCC	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	406
BsrFI	RCCGGY	2 cut(s)	256, 684
BsrI	ACTGG	3 cut(s)	283, 660, 782
BssAI	RCCGGY	2 cut(s)	256, 684
BssECI	CCNNGG	3 cut(s)	303, 345, 541
BssMI	GATC	1 cut(s)	715
BssNI	GRCGYC	3 cut(s)	260, 275, 746
BssT1I	CCWWGG	2 cut(s)	303, 541
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	428
BstACI	GRCGYC	3 cut(s)	260, 275, 746
BstC8I	GCNNGC	3 cut(s)	243, 258, 273
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	824
BstFNI	CGCG	1 cut(s)	239
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	241, 277
BstKTI	GATC	1 cut(s)	718
BstMAI	GTCTC	2 cut(s)	183, 406
BstMBI	GATC	1 cut(s)	715
BstMWI	GCNNNNNNNGC	4 cut(s)	262, 274, 830, 854
BstSCI	CCNGG	2 cut(s)	345, 807
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	615, 745
BstV2I	GAAGAC	3 cut(s)	24, 114, 741
BsuRI	GGCC	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	824
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	2 cut(s)	603, 667
Cac8I	GCNNGC	3 cut(s)	243, 258, 273
CaiI	CAGNNNCTG	1 cut(s)	588
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	2 cut(s)	241, 277
Cfr10I	RCCGGY	2 cut(s)	256, 684
Cfr13I	GGNCC	3 cut(s)	294, 314, 342
CseI	GACGC	2 cut(s)	249, 735
Csp6I	GTAC	2 cut(s)	730, 897
CviAII	CATG	3 cut(s)	224, 454, 814
CviQI	GTAC	2 cut(s)	730, 897
DdeI	CTNAG	1 cut(s)	230
DinI	GGCGCC	1 cut(s)	276
DpnI	GATC	1 cut(s)	717
DpnII	GATC	1 cut(s)	715
DriI	GACNNNNNGTC	1 cut(s)	781
Eam1104I	CTCTTC	1 cut(s)	428
Eam1105I	GACNNNNNGTC	1 cut(s)	781
EarI	CTCTTC	1 cut(s)	428
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	303, 541
Eco24I	GRGCYC	3 cut(s)	231, 303, 553
Eco31I	GGTCTC	1 cut(s)	406
Eco32I	GATATC	1 cut(s)	510
Eco47I	GGWCC	2 cut(s)	314, 342
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	274, 452
Eco88I	CYCGRG	2 cut(s)	354, 819
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	314
EcoRV	GATATC	1 cut(s)	510
EcoT14I	CCWWGG	2 cut(s)	303, 541
EcoT38I	GRGCYC	3 cut(s)	231, 303, 553
EgeI	GGCGCC	1 cut(s)	276
EheI	GGCGCC	1 cut(s)	276
ErhI	CCWWGG	2 cut(s)	303, 541
Esp3I	CGTCTC	1 cut(s)	183
FaeI	CATG	3 cut(s)	227, 457, 817
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	3 cut(s)	223, 453, 813
FauI	CCCGC	1 cut(s)	304
FauNDI	CATATG	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	771
Fnu4HI	GCNGC	5 cut(s)	266, 269, 528, 629, 759
FokI	GGATG	1 cut(s)	811
FriOI	GRGCYC	3 cut(s)	231, 303, 553
Fsp4HI	GCNGC	5 cut(s)	266, 269, 528, 629, 759
FspBI	CTAG	1 cut(s)	554
GlaI	GCGC	2 cut(s)	240, 276
GluI	GCNGC	5 cut(s)	266, 269, 528, 629, 759
GsuI	CTGGAG	1 cut(s)	850
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	4 cut(s)	257, 347, 685, 809
HgaI	GACGC	2 cut(s)	249, 735
HhaI	GCGC	2 cut(s)	241, 277
Hin1I	GRCGYC	3 cut(s)	260, 275, 746
Hin1II	CATG	3 cut(s)	227, 457, 817
Hin6I	GCGC	2 cut(s)	239, 275
HinP1I	GCGC	2 cut(s)	239, 275
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	6 cut(s)	191, 234, 320, 557, 763, 782
HpaII	CCGG	4 cut(s)	257, 347, 685, 809
HphI	GGTGA	3 cut(s)	144, 469, 649
Hpy166II	GTNNAC	1 cut(s)	772
Hpy188I	TCNGA	6 cut(s)	190, 233, 337, 404, 720, 903
Hpy188III	TCNNGA	5 cut(s)	14, 224, 324, 356, 554
Hpy8I	GTNNAC	1 cut(s)	772
Hpy99I	CGWCG	3 cut(s)	265, 776, 833
HpyAV	CCTTC	3 cut(s)	298, 571, 850
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	2 cut(s)	635, 728
HpyCH4V	TGCA	2 cut(s)	245, 631
HpyF10VI	GCNNNNNNNGC	4 cut(s)	262, 274, 830, 854
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	2 cut(s)	635, 728
Hsp92I	GRCGYC	3 cut(s)	260, 275, 746
Hsp92II	CATG	3 cut(s)	227, 457, 817
HspAI	GCGC	2 cut(s)	239, 275
KasI	GGCGCC	1 cut(s)	274
KflI	GGGWCCC	1 cut(s)	314
KroI	GCCGGC	1 cut(s)	256
KroNI	GCCGGC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	715
LmnI	GCTCC	2 cut(s)	693, 875
Lsp1109I	GCAGC	2 cut(s)	615, 745
LweI	GCATC	1 cut(s)	833
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	2 cut(s)	635, 728
MaeIII	GTNAC	1 cut(s)	884
MalI	GATC	1 cut(s)	717
MboI	GATC	1 cut(s)	715
MhlI	GDGCHC	4 cut(s)	122, 231, 303, 553
MluCI	AATT	3 cut(s)	9, 375, 787
Mly113I	GGCGCC	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	243, 791
MmeI	TCCRAC	1 cut(s)	693
MroNI	GCCGGC	1 cut(s)	256
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	2 cut(s)	479, 644
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	4 cut(s)	257, 347, 685, 809
MspR9I	CCNGG	2 cut(s)	347, 809
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	4 cut(s)	262, 274, 830, 854
NaeI	GCCGGC	1 cut(s)	258
NarI	GGCGCC	1 cut(s)	275
NciI	CCSGG	2 cut(s)	347, 809
NdeI	CATATG	1 cut(s)	162
NdeII	GATC	1 cut(s)	715
NgoMIV	GCCGGC	1 cut(s)	256
NlaIII	CATG	3 cut(s)	227, 457, 817
NlaIV	GGNNCC	5 cut(s)	276, 315, 316, 344, 689
NmeAIII	GCCGAG	1 cut(s)	322
PagI	TCATGA	1 cut(s)	223
PdiI	GCCGGC	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	4 cut(s)	191, 320, 557, 763
PfoI	TCCNGGA	1 cut(s)	807
PkrI	GCNGC	5 cut(s)	267, 270, 529, 630, 760
PleI	GAGTC	2 cut(s)	242, 790
PluTI	GGCGCC	1 cut(s)	278
PpsI	GAGTC	2 cut(s)	242, 790
PpuMI	RGGWCCY	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	314
PspN4I	GGNNCC	5 cut(s)	276, 315, 316, 344, 689
PspPI	GGNCC	3 cut(s)	294, 314, 342
PspPPI	RGGWCCY	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	588
RsaI	GTAC	2 cut(s)	731, 898
RsaNI	GTAC	2 cut(s)	730, 897
RseI	CAYNNNNRTG	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	231
SalI	GTCGAC	1 cut(s)	770
SaqAI	TTAA	2 cut(s)	479, 644
SatI	GCNGC	5 cut(s)	266, 269, 528, 629, 759
Sau3AI	GATC	1 cut(s)	715
Sau96I	GGNCC	3 cut(s)	294, 314, 342
SchI	GAGTC	2 cut(s)	243, 791
ScrFI	CCNGG	2 cut(s)	347, 809
SduI	GDGCHC	4 cut(s)	122, 231, 303, 553
SfaNI	GCATC	1 cut(s)	833
SfcI	CTRYAG	1 cut(s)	243
SfoI	GGCGCC	1 cut(s)	276
SinI	GGWCC	2 cut(s)	314, 342
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	3 cut(s)	9, 375, 787
SsiI	CCGC	7 cut(s)	266, 269, 311, 369, 381, 527, 691
SspDI	GGCGCC	1 cut(s)	274
SspMI	CTAG	1 cut(s)	554
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	345, 807
StyI	CCWWGG	2 cut(s)	303, 541
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	2 cut(s)	638, 731
TaqI	TCGA	4 cut(s)	425, 440, 771, 785
TasI	AATT	3 cut(s)	9, 375, 787
TatI	WGTACW	1 cut(s)	896
TauI	GCSGC	3 cut(s)	268, 271, 530
TfiI	GAWTC	4 cut(s)	191, 320, 557, 763
Tru1I	TTAA	2 cut(s)	479, 644
Tru9I	TTAA	2 cut(s)	479, 644
TscAI	CASTG	2 cut(s)	603, 667
TseI	GCWGC	2 cut(s)	628, 758
TspDTI	ATGAA	2 cut(s)	81, 741
TspGWI	ACGGA	2 cut(s)	165, 817
TspRI	CASTG	2 cut(s)	603, 667
VpaK11BI	GGWCC	2 cut(s)	314, 342
XbaI	TCTAGA	1 cut(s)	553
XmiI	GTMKAC	1 cut(s)	771
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.