Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009012

Physical Location & Seq

Genomic Coordinates Reverse (-)

3610129 .. 3613474

Gene Structure 3346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAAAGAGAAACCCAACAAGAATCATCAAAAGACAAAGATGGAGAAGAAAAGCAAGGCATCTCAGAAAAGTCATATTCACCTCCTCTCAGTCCTCTAATATTCCCCCAAAACCATAACAAGTCCCCATCTCCATCTCCGTCTCCATCACCACTACATGATTCTCCAGGTGAAGAAATCTACCACACCAATGAGTTCAGACTTACACCACCGGAGAATCAGACCCCCCACCACTCTAAGTCTGCGCCGCCACCGCCCGTGGAGGCCCAAACCAAAGCCCAAGAGGGGTTTGCTGCGCCCGGAGAGGCTCAAGAGGGAGGAGAGAATAGGAGAACTATGAGACCCTATTTGTCTATATTGAAGAGGGCGAGATGGCAAAGCGTGGTGAGGAGGGCTATGTTGGGGTTGAGGATTTCTGAGTTTTTGTTTTGTTTGATCTCTTTCTCGGTTATGGCGGCCGACAAGAAGCAGGGTTGGGCTTCAGATTCTTTCTCTAACTACAAGGAGTTCAGGTACTGCTTGGCAGTGAATGTGCTAGGGTTTGTGTATTCAGCAATTCAGACCTATGATTTAGTCTATTACTTCACCACCGGAAAACATGTAGTGCAGCACCATCTCCGATATTACTTCGATTTCTTGATGGATCAGATAGTGGAATACACATGGCATGCAATGAATGAGGAAGGTAGAAAGGGAAATGTTGGAGGGGAAGGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

239

Amino Acids

27.21

Weight (kDa)

6.76

Isoelectric Point (pI)

65.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	128 - 221	7.2e-21	Casparian strip membrane protein domain
MARVEL	PF01284	133 - 218	7.9e-06	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40300
fragaria_vesca	FvH4_6g50680 FvH4_6g50680 FvH4_6g50680 FvH4_6g50680
malus_domestica	MD09G1034100.v1.1
prunus_persica	Prupe.3G284200_v2.0.a1
pyrus_communis	pycom111g02710 pycom17g03190
rosa_chinensis	RchiOBHm_Chr2g0171451 RchiOBHm_Chr2g0171471
rosa_laevigata	RLG00000022015
rosa_multiflora	Rmu_sc0006783.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080640
rosa_rugosa	Rorug02G0554500
rosa_samantha	Rh2AG628700 Rh2BG639100 Rh2BG639400 Rh2CG607800 Rh2DG650200 Rh2DG656200
rosa_wichuraiana	Rw2G052080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	248, 254, 455
AclWI	GGATC	1 cut(s)	651
AcoI	YGGCCR	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	166
Alw26I	GTCTC	2 cut(s)	147, 334
AlwI	GGATC	1 cut(s)	651
AlwNI	CAGNNNCTG	1 cut(s)	516
AoxI	GGCC	2 cut(s)	264, 456
ApeKI	GCWGC	2 cut(s)	293, 607
AspLEI	GCGC	2 cut(s)	247, 298
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	5 cut(s)	72, 141, 182, 397, 577
BbvI	GCAGC	2 cut(s)	280, 619
BccI	CCATC	7 cut(s)	35, 136, 142, 154, 366, 621, 634
BciT130I	CCWGG	1 cut(s)	168
BcnI	CCSGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	147, 334
BfaI	CTAG	2 cut(s)	536, 718
BisI	GCNGC	4 cut(s)	248, 294, 456, 608
BlsI	GCNGC	4 cut(s)	249, 295, 457, 609
Bme1390I	CCNGG	2 cut(s)	168, 300
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	2 cut(s)	168, 300
BmsI	GCATC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	2 cut(s)	211, 590
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	678
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	3 cut(s)	78, 103, 408
BseRI	GAGGAG	3 cut(s)	75, 333, 403
BseX3I	CGGCCG	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	280, 619
BsgI	GTGCAG	1 cut(s)	626
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	2 cut(s)	266, 458
BsiEI	CGRYCG	1 cut(s)	459
BsiSI	CCGG	3 cut(s)	212, 300, 591
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	2 cut(s)	147, 334
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	266, 458
Bso31I	GGTCTC	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	435, 643
BspACI	CCGC	3 cut(s)	248, 254, 455
BspANI	GGCC	2 cut(s)	266, 458
BspCNI	CTCAG	3 cut(s)	77, 102, 409
BspPI	GGATC	1 cut(s)	651
BspTNI	GGTCTC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	678
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	435, 643
Bst2UI	CCWGG	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	4 cut(s)	64, 89, 237, 417
BstDSI	CCRYGG	1 cut(s)	258
BstHHI	GCGC	2 cut(s)	247, 298
BstKTI	GATC	2 cut(s)	438, 646
BstMAI	GTCTC	2 cut(s)	147, 334
BstMBI	GATC	2 cut(s)	435, 643
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	1 cut(s)	168
BstNSI	RCATGY	2 cut(s)	602, 671
BstSCI	CCNGG	2 cut(s)	166, 298
BstV1I	GCAGC	2 cut(s)	280, 619
BstZI	CGGCCG	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	266, 458
BtgI	CCRYGG	1 cut(s)	258
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	1 cut(s)	669
CaiI	CAGNNNCTG	1 cut(s)	516
CfoI	GCGC	2 cut(s)	247, 298
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	4 cut(s)	158, 599, 663, 668
CviJI	RGCY	6 cut(s)	266, 278, 308, 395, 458, 479
CviKI_1	RGCY	6 cut(s)	266, 278, 308, 395, 458, 479
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	4 cut(s)	64, 89, 237, 417
DpnI	GATC	2 cut(s)	437, 645
DpnII	GATC	2 cut(s)	435, 643
EaeI	YGGCCR	1 cut(s)	456
EagI	CGGCCG	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
EclXI	CGGCCG	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	334
Eco52I	CGGCCG	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	4 cut(s)	161, 602, 666, 671
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	4 cut(s)	157, 598, 662, 667
Fnu4HI	GCNGC	4 cut(s)	248, 294, 456, 608
Fsp4HI	GCNGC	4 cut(s)	248, 294, 456, 608
FspBI	CTAG	2 cut(s)	536, 718
GlaI	GCGC	2 cut(s)	246, 297
GluI	GCNGC	4 cut(s)	248, 294, 456, 608
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	266, 458
HapII	CCGG	3 cut(s)	212, 300, 591
HhaI	GCGC	2 cut(s)	247, 298
Hin1II	CATG	4 cut(s)	161, 602, 666, 671
Hin6I	GCGC	2 cut(s)	245, 296
HinP1I	GCGC	2 cut(s)	245, 296
HinfI	GANTC	4 cut(s)	23, 161, 217, 485
HpaII	CCGG	3 cut(s)	212, 300, 591
HphI	GGTGA	5 cut(s)	72, 141, 182, 397, 577
Hpy188I	TCNGA	8 cut(s)	67, 200, 222, 418, 484, 561, 620, 648
Hpy188III	TCNNGA	2 cut(s)	311, 637
HpyAV	CCTTC	2 cut(s)	677, 704
HpyCH4V	TGCA	2 cut(s)	607, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	4 cut(s)	64, 89, 237, 417
Hsp92II	CATG	4 cut(s)	161, 602, 666, 671
HspAI	GCGC	2 cut(s)	245, 296
Kzo9I	GATC	2 cut(s)	435, 643
LpnPI	CCDG	7 cut(s)	153, 180, 225, 313, 455, 496, 604
Lsp1109I	GCAGC	2 cut(s)	280, 619
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	2 cut(s)	536, 718
MalI	GATC	2 cut(s)	437, 645
MboI	GATC	2 cut(s)	435, 643
MboII	GAAGA	3 cut(s)	59, 185, 373
MluCI	AATT	1 cut(s)	555
MmeI	TCCRAC	1 cut(s)	682
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	3 cut(s)	212, 300, 591
MspR9I	CCNGG	2 cut(s)	168, 300
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	253
NciI	CCSGG	1 cut(s)	300
NdeII	GATC	2 cut(s)	435, 643
NlaIII	CATG	4 cut(s)	161, 602, 666, 671
NspI	RCATGY	2 cut(s)	602, 671
PaeI	GCATGC	1 cut(s)	671
PciI	ACATGT	1 cut(s)	598
PfeI	GAWTC	4 cut(s)	23, 161, 217, 485
PkrI	GCNGC	4 cut(s)	249, 295, 457, 609
PscI	ACATGT	1 cut(s)	598
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	516
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	189
SatI	GCNGC	4 cut(s)	248, 294, 456, 608
Sau3AI	GATC	2 cut(s)	435, 643
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	2 cut(s)	168, 300
SetI	ASST	6 cut(s)	85, 172, 515, 566, 688, 715
SfaNI	GCATC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
SphI	GCATGC	1 cut(s)	671
Sse9I	AATT	1 cut(s)	555
SsiI	CCGC	3 cut(s)	248, 254, 455
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	2 cut(s)	536, 718
StyD4I	CCNGG	2 cut(s)	166, 298
TaqI	TCGA	1 cut(s)	630
TasI	AATT	1 cut(s)	555
TauI	GCSGC	2 cut(s)	250, 458
TfiI	GAWTC	4 cut(s)	23, 161, 217, 485
TscAI	CASTG	1 cut(s)	531
TseI	GCWGC	2 cut(s)	293, 607
TspDTI	ATGAA	2 cut(s)	17, 689
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	531
XceI	RCATGY	2 cut(s)	602, 671
XspI	CTAG	2 cut(s)	536, 718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.