Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009012

Physical Location & Seq

Genomic Coordinates Forward (+)

79982151 .. 79984351

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022015

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAAAAGAGAAACCCAACAAGAATCATCAAAAGACAAGGATGGAGAAGAAAAGCACGGCATCTCAGAAAAGTCATATTCACCTCCTCTTAGTCCTCTAATATTCCCCCAAAACCATAACAAGTCCCCATCTCCATCTCCGTCTCCATCACCACTACATGATTCTCCAGCTGAAGAAATCTACCACACCAATGAGTTCAGACTCACACCACCGGAGAATCAGACCCCCCACCACTCTAAGTCTGCGTCGCCACCGCCCGTGGAGGCCCAAACCAAAGCCCAAGAAGGGTTTGCTGCGCCAGGAGAGGCTCAAGAAGGAGGAGAGAATAGGAGAACTATGAGACCCTATTTGTCTATATTGAAGAGGGCGAAGAGGCAAAGCTTGGTGAGGAGGGCTATGTTGGGGTTAAGGATTTCTGAGTTTTTGTTTTGTTTGATCTCTTTCTCGGTTATGGCGGCCGACAAGAAGCAGGGTTGGGCTTCAGATTCTTTCTCTAACTACAAGGAGTTCAGGTACTGCTTGGCAGTGAATGTGCTAGGGTTTGTGTATTCAGGGATTCAGACCTATGATTTAGTCTATTACTTCACCACCGGAAAACATGTAGTGCAGCACCATCTCCGATATTACTTCGATTTCTTGATGGATCAGATTTTGACCTACCTTGTGATATCGGCATCTTCATCAGCAGCGACTCGGGTTGAAGATTGGGAGTCGAATTGGGGCAAAGACAAGTTCCCTGATATGGCACGAGCATCTGTGGCACTATCCTTCCTTGCCTTCTTTGCATTTGCCTCTAGCTCTCTCATCTCTGGTTACACCCTCTGTACTCTAAAATCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

281

Amino Acids

31.59

Weight (kDa)

8.3

Isoelectric Point (pI)

61.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	128 - 262	7.4e-34	Casparian strip membrane protein domain
MARVEL	PF01284	133 - 266	1.7e-12	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40300
fragaria_vesca	FvH4_6g50680 FvH4_6g50680 FvH4_6g50680 FvH4_6g50680
malus_domestica	MD09G1034100.v1.1
prunus_persica	Prupe.3G284200_v2.0.a1
pyrus_communis	pycom111g02710 pycom17g03190
rosa_chinensis	RchiOBHm_Chr2g0171451 RchiOBHm_Chr2g0171471
rosa_laevigata	RLG00000022015
rosa_multiflora	Rmu_sc0006783.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080640
rosa_rugosa	Rorug02G0554500
rosa_samantha	Rh2AG628700 Rh2BG639100 Rh2BG639400 Rh2CG607800 Rh2DG650200 Rh2DG656200
rosa_wichuraiana	Rw2G052080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	254, 455
AclWI	GGATC	1 cut(s)	651
AcoI	YGGCCR	1 cut(s)	456
AcuI	CTGAAG	2 cut(s)	192, 465
AfaI	GTAC	2 cut(s)	515, 826
AfiI	CCNNNNNNNGG	2 cut(s)	285, 742
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	2 cut(s)	361, 701
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	170, 381, 798
AluI	AGCT	3 cut(s)	170, 381, 798
Alw26I	GTCTC	2 cut(s)	147, 334
AlwI	GGATC	1 cut(s)	651
AlwNI	CAGNNNCTG	1 cut(s)	516
Ama87I	CYCGRG	1 cut(s)	693
AoxI	GGCC	2 cut(s)	264, 456
ApeKI	GCWGC	3 cut(s)	293, 607, 686
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	4 cut(s)	72, 141, 397, 577
AvaI	CYCGRG	1 cut(s)	693
BauI	CACGAG	1 cut(s)	747
BbvI	GCAGC	3 cut(s)	280, 619, 698
BccI	CCATC	6 cut(s)	35, 136, 142, 154, 621, 634
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	147, 334
BfaI	CTAG	2 cut(s)	536, 795
BisI	GCNGC	4 cut(s)	294, 456, 608, 687
BlsI	GCNGC	4 cut(s)	295, 457, 609, 688
Bme1390I	CCNGG	1 cut(s)	300
BmeT110I	CYCGRG	1 cut(s)	693
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	3 cut(s)	69, 683, 761
BpmI	CTGGAG	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	2 cut(s)	211, 590
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 742
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	285, 742
BseMII	CTCAG	2 cut(s)	78, 408
BseRI	GAGGAG	3 cut(s)	75, 333, 403
BseX3I	CGGCCG	1 cut(s)	456
BseXI	GCAGC	3 cut(s)	280, 619, 698
BsgI	GTGCAG	1 cut(s)	626
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	2 cut(s)	266, 458
BsiEI	CGRYCG	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	693
BsiSI	CCGG	2 cut(s)	212, 591
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	285, 742
BsmAI	GTCTC	2 cut(s)	147, 334
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	266, 458
Bso31I	GGTCTC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	693
Bsp143I	GATC	2 cut(s)	435, 643
BspACI	CCGC	2 cut(s)	254, 455
BspANI	GGCC	2 cut(s)	266, 458
BspCNI	CTCAG	2 cut(s)	77, 409
BspPI	GGATC	1 cut(s)	651
BspTNI	GGTCTC	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	435, 643
BssSI	CACGAG	1 cut(s)	747
Bst2BI	CACGAG	1 cut(s)	747
Bst2UI	CCWGG	1 cut(s)	300
Bst6I	CTCTTC	2 cut(s)	356, 365
BstDEI	CTNAG	4 cut(s)	64, 89, 237, 417
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	2 cut(s)	438, 646
BstMAI	GTCTC	2 cut(s)	147, 334
BstMBI	GATC	2 cut(s)	435, 643
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	2 cut(s)	758, 782
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	298
BstV1I	GCAGC	3 cut(s)	280, 619, 698
BstZI	CGGCCG	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	266, 458
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	46
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
CaiI	CAGNNNCTG	1 cut(s)	516
CfoI	GCGC	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	2 cut(s)	514, 825
CviAII	CATG	2 cut(s)	158, 599
CviJI	RGCY	9 cut(s)	170, 266, 278, 308, 381, 395, 458, 479, 798
CviKI_1	RGCY	9 cut(s)	170, 266, 278, 308, 381, 395, 458, 479, 798
CviQI	GTAC	2 cut(s)	514, 825
DdeI	CTNAG	4 cut(s)	64, 89, 237, 417
DpnI	GATC	2 cut(s)	437, 645
DpnII	GATC	2 cut(s)	435, 643
EaeI	YGGCCR	1 cut(s)	456
EagI	CGGCCG	1 cut(s)	456
Eam1104I	CTCTTC	2 cut(s)	356, 365
EarI	CTCTTC	2 cut(s)	356, 365
EclXI	CGGCCG	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	334
Eco32I	GATATC	1 cut(s)	669
Eco52I	CGGCCG	1 cut(s)	456
Eco57I	CTGAAG	2 cut(s)	192, 465
Eco88I	CYCGRG	1 cut(s)	693
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	669
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	2 cut(s)	161, 602
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	157, 598
Fnu4HI	GCNGC	4 cut(s)	294, 456, 608, 687
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	4 cut(s)	294, 456, 608, 687
FspBI	CTAG	2 cut(s)	536, 795
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	4 cut(s)	294, 456, 608, 687
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	266, 458
HapII	CCGG	2 cut(s)	212, 591
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	2 cut(s)	161, 602
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	8 cut(s)	23, 161, 201, 217, 485, 556, 691, 710
HpaII	CCGG	2 cut(s)	212, 591
HphI	GGTGA	4 cut(s)	72, 141, 397, 577
Hpy188I	TCNGA	8 cut(s)	67, 200, 222, 418, 484, 561, 620, 648
Hpy188III	TCNNGA	2 cut(s)	311, 637
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	4 cut(s)	278, 308, 778, 787
HpyCH4V	TGCA	2 cut(s)	607, 785
HpyF10VI	GCNNNNNNNGC	2 cut(s)	758, 782
HpyF3I	CTNAG	4 cut(s)	64, 89, 237, 417
Hsp92II	CATG	2 cut(s)	161, 602
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	2 cut(s)	435, 643
Lsp1109I	GCAGC	3 cut(s)	280, 619, 698
LweI	GCATC	3 cut(s)	69, 683, 761
MaeI	CTAG	2 cut(s)	536, 795
MaeIII	GTNAC	1 cut(s)	812
MalI	GATC	2 cut(s)	437, 645
MboI	GATC	2 cut(s)	435, 643
MboII	GAAGA	6 cut(s)	59, 185, 373, 382, 669, 713
MluCI	AATT	1 cut(s)	715
MlyI	GAGTC	3 cut(s)	195, 685, 719
MseI	TTAA	1 cut(s)	407
MslI	CAYNNNNRTG	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	2 cut(s)	212, 591
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	758, 782
NdeII	GATC	2 cut(s)	435, 643
NlaIII	CATG	2 cut(s)	161, 602
NspI	RCATGY	1 cut(s)	602
PciI	ACATGT	1 cut(s)	598
PfeI	GAWTC	5 cut(s)	23, 161, 217, 485, 556
PkrI	GCNGC	4 cut(s)	295, 457, 609, 688
PleI	GAGTC	3 cut(s)	195, 685, 718
PpsI	GAGTC	3 cut(s)	195, 685, 718
PscI	ACATGT	1 cut(s)	598
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	516
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	515, 826
RsaNI	GTAC	2 cut(s)	514, 825
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	4 cut(s)	294, 456, 608, 687
Sau3AI	GATC	2 cut(s)	435, 643
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	3 cut(s)	195, 685, 719
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	8 cut(s)	85, 172, 383, 515, 566, 659, 663, 800
SfaNI	GCATC	3 cut(s)	69, 683, 761
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	1 cut(s)	715
SsiI	CCGC	2 cut(s)	254, 455
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	2 cut(s)	536, 795
StyD4I	CCNGG	1 cut(s)	298
TaqI	TCGA	2 cut(s)	630, 713
TasI	AATT	1 cut(s)	715
TatI	WGTACW	1 cut(s)	824
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	5 cut(s)	23, 161, 217, 485, 556
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	1 cut(s)	531
TseI	GCWGC	3 cut(s)	293, 607, 686
TspDTI	ATGAA	2 cut(s)	17, 669
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	531
XceI	RCATGY	1 cut(s)	602
XspI	CTAG	2 cut(s)	536, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.