Rorug02G0554500

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009012
Physical Location & Seq
Forward (+)
68153658 .. 68155375
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0554500.1

Sequence Viewer

Length: 1089 bp
ATGAAGGAGCGGCAGCGCTGGCAACCCGAAGAAGACGCCCTCCTCCGCGCCTACGTGAAGCAGTATGGCCCCAAAGAATGGGCCCTCGTCTCCCAGCGCATGGCCCAGCCCATCAACCGCGACCCGAAATCCTGCCTCGAGCGCTGGAAGAATTATCTGAGGCCCGGCCTCAAGAAGGGCTCCCTCTCCCCGGAGGAGCAGTCCTTGGTCATCGAGCTTCAGGCCAAGTACGGCAACAAGTGGAAGAAGATCGCCGCCGAGCTCCCCGGCCGCACCCCCAAGCGCCTCGGCAAGTGGTGGGAGGTCTTCCGCGAAAAGCAGCTCAAACAACAGCTCACCAAGCACAAGCCCGGCTCCGCCGCCGCCTCCCAAGCCTCCACCGCCGCGTCCTCCTCGTCGACTCAGCCCCCGGAGGGGAGTATTCCGGTCGCCGCCGGGATCTCCTCGCCGGAGAGGGCCGCGCAGGGGCCGTACGACCACATTTTGGAGACGTTTGCTGAGAAGTACGTCCAGCCCAAGCTCTACGGCATGATGTCCGAACCCGACCCGCTTCTCTCGCTCGGGTCGGCCGCCGCGACGCCTTCCGTTCTGCCGCCGTGGATGAACCCGCCTTCCGCGGCGTCGTCCACGTCCTCCACGACGCCTTCTTCTTCGGTGAGCCTGTCGCTCTCGCCGTCGGATCCGGGTTACGACCCGGACCCGACCCGGGTGCAGATGGGTACGCTGGTGCAGTGGTGCAAGGAGGTGGAGGAGGGGAGGCAGAGCTGGGTGCAGCACAAGAAGGAGGCCACGTGGCGGCTGAGCAGGCTGGAGCAGCAGCTGGAGTCGGAGAAGGCGAGGAAGAGGAGGGAGGCGATGGAGGAGATCGAAGCCAAGATAAGGGCGTTGAGGGAAGAAGAGATGGCGTTTATGGGTCGGATTGAGAGCGATTACAGAGAGCAAATGAGCGTTTTGCAGAGAGAGGCGGAGAGCAAGGAGGCCAAGCTGGTGGAAGCTTGGTGCAGTAAGCATGTCAGGCTTGCTAAGCTTGTGGATCAAATTGGGGGTCATGGCCATAATAATCATGCCTGTCATGGCTTCACCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

362

Amino Acids

40.73

Weight (kDa)

9.14

Isoelectric Point (pI)

66.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 4 - 53 2.4e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 7 - 66 7e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 59 - 94 2e-09 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 63 - 104 6.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 78, 100, 484
AccBSI CCGCTC 1 cut(s) 10
AccI GTMKAC 1 cut(s) 398
AccII CGCG 7 cut(s) 48, 120, 312, 386, 461, 575, 617
AclWI GGATC 4 cut(s) 446, 674, 687, 1041
AcoI YGGCCR 3 cut(s) 268, 567, 1051
AcuI CTGAAG 1 cut(s) 203
AcvI CACGTG 1 cut(s) 792
AcyI GRCGYC 4 cut(s) 36, 578, 620, 641
AfaI GTAC 4 cut(s) 230, 473, 506, 721
AfeI AGCGCT 2 cut(s) 17, 143
AjiI CACGTC 1 cut(s) 630
AloI GAACNNNNNNTCC 2 cut(s) 596, 628
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 2 cut(s) 94, 482
AlwI GGATC 4 cut(s) 446, 674, 687, 1041
AlwNI CAGNNNCTG 1 cut(s) 820
Ama87I CYCGRG 3 cut(s) 137, 560, 705
Aor51HI AGCGCT 2 cut(s) 17, 143
ApaI GGGCCC 1 cut(s) 85
ApeKI GCWGC 5 cut(s) 13, 319, 772, 814, 817
ArsI GACNNNNNNTTYG 2 cut(s) 1030, 1062
AspLEI GCGC 6 cut(s) 18, 50, 99, 144, 285, 463
AspS9I GGNCC 8 cut(s) 68, 81, 82, 103, 162, 456, 467, 697
AsuHPI GGTGA 3 cut(s) 328, 667, 1072
AvaI CYCGRG 3 cut(s) 137, 560, 705
AvaII GGWCC 1 cut(s) 697
BaeGI GKGCMC 1 cut(s) 85
BaeI ACNNNNGTAYC 2 cut(s) 711, 744
BalI TGGCCA 1 cut(s) 1053
BamHI GGATCC 1 cut(s) 679
BanII GRGCYC 3 cut(s) 85, 182, 264
BbrPI CACGTG 1 cut(s) 792
BbsI GAAGAC 2 cut(s) 39, 298
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 5 cut(s) 25, 331, 784, 826, 829
BccI CCATC 4 cut(s) 119, 709, 850, 895
BceAI ACGGC 5 cut(s) 247, 454, 541, 580, 658
BcgI CGANNNNNNTGC 2 cut(s) 691, 725
BcoDI GTCTC 2 cut(s) 94, 482
BfoI RGCGCY 3 cut(s) 19, 145, 286
BlpI GCTNAGC 2 cut(s) 800, 1023
Bme18I GGWCC 1 cut(s) 697
BmeT110I CYCGRG 3 cut(s) 137, 560, 705
BmgBI CACGTC 1 cut(s) 630
BmgT120I GGNCC 8 cut(s) 68, 81, 82, 103, 162, 456, 467, 697
BmiI GGNNCC 7 cut(s) 70, 83, 181, 355, 468, 681, 699
BpiI GAAGAC 2 cut(s) 39, 298
BpmI CTGGAG 2 cut(s) 830, 842
Bpu1102I GCTNAGC 2 cut(s) 800, 1023
BpuEI CTTGAG 1 cut(s) 155
BsaAI YACGTR 2 cut(s) 55, 792
BsaHI GRCGYC 4 cut(s) 36, 578, 620, 641
BsaJI CCNNGG 8 cut(s) 189, 204, 265, 286, 408, 596, 615, 705
BsaWI WCCGGW 1 cut(s) 424
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 776, 806
Bse1I ACTGG 1 cut(s) 1083
BseDI CCNNGG 8 cut(s) 189, 204, 265, 286, 408, 596, 615, 705
BseGI GGATG 1 cut(s) 606
BseMII CTCAG 4 cut(s) 149, 416, 489, 791
BseNI ACTGG 1 cut(s) 1083
BseRI GAGGAG 7 cut(s) 32, 209, 382, 433, 764, 859, 875
BseSI GKGCMC 1 cut(s) 85
BseX3I CGGCCG 2 cut(s) 268, 567
BseXI GCAGC 5 cut(s) 25, 331, 784, 826, 829
BseYI CCCAGC 3 cut(s) 93, 105, 765
BsgI GTGCAG 4 cut(s) 731, 749, 791, 1021
Bsh1236I CGCG 7 cut(s) 48, 120, 312, 386, 461, 575, 617
Bsh1285I CGRYCG 3 cut(s) 271, 429, 570
BsiEI CGRYCG 3 cut(s) 271, 429, 570
BsiHKAI GWGCWC 1 cut(s) 264
BsiHKCI CYCGRG 3 cut(s) 137, 560, 705
BsiWI CGTACG 1 cut(s) 471
BsmAI GTCTC 2 cut(s) 94, 482
BsmBI CGTCTC 2 cut(s) 94, 482
BsoBI CYCGRG 3 cut(s) 137, 560, 705
Bsp120I GGGCCC 1 cut(s) 81
Bsp1286I GDGCHC 3 cut(s) 85, 182, 264
Bsp143I GATC 5 cut(s) 249, 438, 679, 864, 1033
Bsp1720I GCTNAGC 2 cut(s) 800, 1023
BspCNI CTCAG 4 cut(s) 150, 415, 490, 792
BspFNI CGCG 7 cut(s) 48, 120, 312, 386, 461, 575, 617
BspLI GGNNCC 7 cut(s) 70, 83, 181, 355, 468, 681, 699
BspPI GGATC 4 cut(s) 446, 674, 687, 1041
BsrBI CCGCTC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 1083
BssECI CCNNGG 8 cut(s) 189, 204, 265, 286, 408, 596, 615, 705
BssMI GATC 5 cut(s) 249, 438, 679, 864, 1033
BssNI GRCGYC 4 cut(s) 36, 578, 620, 641
BssT1I CCWWGG 1 cut(s) 204
Bst6I CTCTTC 2 cut(s) 836, 891
BstACI GRCGYC 4 cut(s) 36, 578, 620, 641
BstBAI YACGTR 2 cut(s) 55, 792
BstC8I GCNNGC 3 cut(s) 20, 806, 1020
BstDEI CTNAG 5 cut(s) 158, 402, 498, 800, 1023
BstDSI CCRYGG 2 cut(s) 596, 615
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 606
BstFNI CGCG 7 cut(s) 48, 120, 312, 386, 461, 575, 617
BstH2I RGCGCY 3 cut(s) 19, 145, 286
BstHHI GCGC 6 cut(s) 18, 50, 99, 144, 285, 463
BstKTI GATC 5 cut(s) 252, 441, 682, 867, 1036
BstMAI GTCTC 2 cut(s) 94, 482
BstMBI GATC 5 cut(s) 249, 438, 679, 864, 1033
BstMCI CGRYCG 3 cut(s) 271, 429, 570
BstNSI RCATGY 1 cut(s) 1013
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 7 cut(s) 48, 120, 312, 386, 461, 575, 617
BstV1I GCAGC 5 cut(s) 25, 331, 784, 826, 829
BstV2I GAAGAC 2 cut(s) 39, 298
BstX2I RGATCY 2 cut(s) 438, 679
BstXI CCANNNNNNTGG 1 cut(s) 988
BstYI RGATCY 2 cut(s) 438, 679
BstZI CGGCCG 2 cut(s) 268, 567
BtgI CCRYGG 2 cut(s) 596, 615
BtgZI GCGATG 1 cut(s) 869
BtrI CACGTC 1 cut(s) 630
BtsCI GGATG 1 cut(s) 606
BtsI GCAGTG 1 cut(s) 737
BtsIMutI CAGTG 1 cut(s) 737
Cac8I GCNNGC 3 cut(s) 20, 806, 1020
CaiI CAGNNNCTG 1 cut(s) 820
CfoI GCGC 6 cut(s) 18, 50, 99, 144, 285, 463
Cfr13I GGNCC 8 cut(s) 68, 81, 82, 103, 162, 456, 467, 697
Cfr42I CCGCGG 1 cut(s) 618
Cfr9I CCCGGG 1 cut(s) 705
CseI GACGC 5 cut(s) 44, 375, 586, 609, 649
Csp6I GTAC 4 cut(s) 229, 472, 505, 720
CviAII CATG 6 cut(s) 100, 529, 1010, 1049, 1064, 1073
CviQI GTAC 4 cut(s) 229, 472, 505, 720
DdeI CTNAG 5 cut(s) 158, 402, 498, 800, 1023
DpnI GATC 5 cut(s) 251, 440, 681, 866, 1035
DpnII GATC 5 cut(s) 249, 438, 679, 864, 1033
EaeI YGGCCR 3 cut(s) 268, 567, 1051
EagI CGGCCG 2 cut(s) 268, 567
Eam1104I CTCTTC 2 cut(s) 836, 891
EarI CTCTTC 2 cut(s) 836, 891
EciI GGCGGA 2 cut(s) 346, 980
Ecl136II GAGCTC 1 cut(s) 262
EclXI CGGCCG 2 cut(s) 268, 567
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 3 cut(s) 85, 182, 264
Eco47I GGWCC 1 cut(s) 697
Eco47III AGCGCT 2 cut(s) 17, 143
Eco52I CGGCCG 2 cut(s) 268, 567
Eco53kI GAGCTC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 203
Eco72I CACGTG 1 cut(s) 792
Eco88I CYCGRG 3 cut(s) 137, 560, 705
EcoICRI GAGCTC 1 cut(s) 262
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 3 cut(s) 85, 182, 264
ErhI CCWWGG 1 cut(s) 204
Esp3I CGTCTC 2 cut(s) 94, 482
FaeI CATG 6 cut(s) 103, 532, 1013, 1052, 1067, 1076
FaiI YATR 9 cut(s) 66, 101, 530, 911, 1011, 1050, 1056, 1065, 1074
FatI CATG 6 cut(s) 99, 528, 1009, 1048, 1063, 1072
FauI CCCGC 2 cut(s) 555, 615
FblI GTMKAC 1 cut(s) 398
FokI GGATG 1 cut(s) 613
FriOI GRGCYC 3 cut(s) 85, 182, 264
GlaI GCGC 6 cut(s) 17, 49, 98, 143, 284, 462
GsaI CCCAGC 3 cut(s) 97, 109, 769
GsuI CTGGAG 2 cut(s) 830, 842
HaeII RGCGCY 3 cut(s) 19, 145, 286
HgaI GACGC 5 cut(s) 44, 375, 586, 609, 649
HhaI GCGC 6 cut(s) 18, 50, 99, 144, 285, 463
Hin1I GRCGYC 4 cut(s) 36, 578, 620, 641
Hin1II CATG 6 cut(s) 103, 532, 1013, 1052, 1067, 1076
Hin6I GCGC 6 cut(s) 16, 48, 97, 142, 283, 461
HinP1I GCGC 6 cut(s) 16, 48, 97, 142, 283, 461
HincII GTYRAC 1 cut(s) 399
HindII GTYRAC 1 cut(s) 399
HindIII AAGCTT 2 cut(s) 993, 1025
HinfI GANTC 2 cut(s) 400, 824
HphI GGTGA 3 cut(s) 328, 667, 1072
Hpy166II GTNNAC 2 cut(s) 399, 627
Hpy188I TCNGA 5 cut(s) 159, 538, 679, 829, 918
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 2 cut(s) 399, 627
Hpy99I CGWCG 5 cut(s) 400, 580, 625, 643, 679
HpyAV CCTTC 6 cut(s) 169, 591, 621, 654, 775, 826
HpyCH4IV ACGT 5 cut(s) 54, 491, 507, 629, 791
HpyCH4V TGCA 6 cut(s) 712, 730, 738, 772, 955, 1002
HpyF3I CTNAG 5 cut(s) 158, 402, 498, 800, 1023
HpySE526I ACGT 5 cut(s) 54, 491, 507, 629, 791
Hsp92I GRCGYC 4 cut(s) 36, 578, 620, 641
Hsp92II CATG 6 cut(s) 103, 532, 1013, 1052, 1067, 1076
HspAI GCGC 6 cut(s) 16, 48, 97, 142, 283, 461
KspI CCGCGG 1 cut(s) 618
Kzo9I GATC 5 cut(s) 249, 438, 679, 864, 1033
LmnI GCTCC 6 cut(s) 7, 185, 196, 267, 359, 811
Lsp1109I GCAGC 5 cut(s) 25, 331, 784, 826, 829
MaeII ACGT 5 cut(s) 54, 491, 507, 629, 791
MaeIII GTNAC 1 cut(s) 686
MalI GATC 5 cut(s) 251, 440, 681, 866, 1035
MbiI CCGCTC 1 cut(s) 10
MboI GATC 5 cut(s) 249, 438, 679, 864, 1033
MflI RGATCY 2 cut(s) 438, 679
MhlI GDGCHC 3 cut(s) 85, 182, 264
MlsI TGGCCA 1 cut(s) 1053
MluCI AATT 2 cut(s) 151, 1038
MluNI TGGCCA 1 cut(s) 1053
MlyI GAGTC 2 cut(s) 394, 833
MmeI TCCRAC 3 cut(s) 657, 807, 896
Mox20I TGGCCA 1 cut(s) 1053
MscI TGGCCA 1 cut(s) 1053
MseI TTAA 1 cut(s) 1087
Msp20I TGGCCA 1 cut(s) 1053
MspA1I CMGCKG 2 cut(s) 617, 820
MvnI CGCG 7 cut(s) 48, 120, 312, 386, 461, 575, 617
NdeII GATC 5 cut(s) 249, 438, 679, 864, 1033
NlaIII CATG 6 cut(s) 103, 532, 1013, 1052, 1067, 1076
NlaIV GGNNCC 7 cut(s) 70, 83, 181, 355, 468, 681, 699
NmeAIII GCCGAG 2 cut(s) 267, 283
NspI RCATGY 1 cut(s) 1013
PaeR7I CTCGAG 1 cut(s) 137
PcsI WCGNNNNNNNCGW 4 cut(s) 572, 635, 671, 833
Pfl23II CGTACG 1 cut(s) 471
PflMI CCANNNNNTGG 3 cut(s) 78, 100, 484
PleI GAGTC 2 cut(s) 394, 832
PmaCI CACGTG 1 cut(s) 792
PmlI CACGTG 1 cut(s) 792
PpsI GAGTC 2 cut(s) 394, 832
Ppu21I YACGTR 2 cut(s) 55, 792
Psp124BI GAGCTC 1 cut(s) 264
PspCI CACGTG 1 cut(s) 792
PspFI CCCAGC 3 cut(s) 93, 105, 765
PspLI CGTACG 1 cut(s) 471
PspN4I GGNNCC 7 cut(s) 70, 83, 181, 355, 468, 681, 699
PspOMI GGGCCC 1 cut(s) 81
PspPI GGNCC 8 cut(s) 68, 81, 82, 103, 162, 456, 467, 697
PspXI VCTCGAGB 1 cut(s) 137
PstNI CAGNNNCTG 1 cut(s) 820
PsuI RGATCY 2 cut(s) 438, 679
PvuII CAGCTG 1 cut(s) 820
RsaI GTAC 4 cut(s) 230, 473, 506, 721
RsaNI GTAC 4 cut(s) 229, 472, 505, 720
SacI GAGCTC 1 cut(s) 264
SacII CCGCGG 1 cut(s) 618
SalI GTCGAC 1 cut(s) 397
SaqAI TTAA 1 cut(s) 1087
Sau3AI GATC 5 cut(s) 249, 438, 679, 864, 1033
Sau96I GGNCC 8 cut(s) 68, 81, 82, 103, 162, 456, 467, 697
SchI GAGTC 2 cut(s) 394, 833
SduI GDGCHC 3 cut(s) 85, 182, 264
Sfr274I CTCGAG 1 cut(s) 137
Sfr303I CCGCGG 1 cut(s) 618
SgrBI CCGCGG 1 cut(s) 618
SinI GGWCC 1 cut(s) 697
SlaI CTCGAG 1 cut(s) 137
SmaI CCCGGG 1 cut(s) 707
SmlI CTYRAG 2 cut(s) 137, 170
SmoI CTYRAG 2 cut(s) 137, 170
Sse9I AATT 2 cut(s) 151, 1038
SstI GAGCTC 1 cut(s) 264
StyI CCWWGG 1 cut(s) 204
TaiI ACGT 5 cut(s) 57, 494, 510, 632, 794
TaqI TCGA 4 cut(s) 138, 213, 398, 867
TasI AATT 2 cut(s) 151, 1038
Tru1I TTAA 1 cut(s) 1087
Tru9I TTAA 1 cut(s) 1087
TscAI CASTG 1 cut(s) 737
TseI GCWGC 5 cut(s) 13, 319, 772, 814, 817
TspDTI ATGAA 2 cut(s) 17, 617
TspGWI ACGGA 1 cut(s) 574
TspMI CCCGGG 1 cut(s) 705
TspRI CASTG 1 cut(s) 737
Van91I CCANNNNNTGG 3 cut(s) 78, 100, 484
VpaK11BI GGWCC 1 cut(s) 697
XagI CCTNNNNNAGG 1 cut(s) 173
XceI RCATGY 1 cut(s) 1013
XhoI CTCGAG 1 cut(s) 137
XmaI CCCGGG 1 cut(s) 705
XmiI GTMKAC 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.