RchiOBHm_Chr2g0171471

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0009012
Physical Location & Seq
Forward (+)
85083939 .. 85085656
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53888

Sequence Viewer

Length: 261 bp
ATGGCGGCCGATAAGAAGCAGGGTTGGGCTTCAGATTCATTCTCTAAATACAAGGAGTTCAGGTTTATAATGACCTACCTTGTGATATCGACATCTTCATCAGCAGCGACTCGGGTTGAAGATTGGGAGTTGAATTGGGGCAAAGACAAGTTCCCTGATATGGCACGAGCATCGGTGGCACTATCCTTCCTTGCATTCTTTGCATTTGCCTCTAGCTCTCTCATCTCTGGTTACACCCTTTGTACACTAAAATCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

86

Amino Acids

9.65

Weight (kDa)

8.82

Isoelectric Point (pI)

24.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 23 - 68 7.6e-07 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 68
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 15
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 2 cut(s) 119, 133
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 111
BauI CACGAG 1 cut(s) 165
BbvI GCAGC 1 cut(s) 116
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BfaI CTAG 1 cut(s) 213
BisI GCNGC 2 cut(s) 6, 105
BlsI GCNGC 2 cut(s) 7, 106
BmeT110I CYCGRG 1 cut(s) 111
BmsI GCATC 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 160
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 160
BsmI GAATGC 1 cut(s) 194
BsnI GGCC 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 111
Bsp1407I TGTACA 1 cut(s) 242
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 8
BsrGI TGTACA 1 cut(s) 242
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
BstAPI GCANNNNNTGC 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 242
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 176, 200
BstV1I GCAGC 1 cut(s) 116
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 1 cut(s) 8
Csp6I GTAC 1 cut(s) 243
CviJI RGCY 3 cut(s) 8, 29, 216
CviKI_1 RGCY 3 cut(s) 8, 29, 216
CviQI GTAC 1 cut(s) 243
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
EclXI CGGCCG 1 cut(s) 6
Eco32I GATATC 1 cut(s) 87
Eco52I CGGCCG 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 111
EcoRV GATATC 1 cut(s) 87
FaiI YATR 3 cut(s) 68, 161, 257
Fnu4HI GCNGC 2 cut(s) 6, 105
Fsp4HI GCNGC 2 cut(s) 6, 105
FspBI CTAG 1 cut(s) 213
GluI GCNGC 2 cut(s) 6, 105
HaeIII GGCC 1 cut(s) 8
HinfI GANTC 2 cut(s) 35, 109
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 194, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 200
LpnPI CCDG 4 cut(s) 5, 46, 168, 213
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 1 cut(s) 179
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 230
MboII GAAGA 2 cut(s) 87, 131
MluCI AATT 1 cut(s) 133
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 1 cut(s) 220
Mva1269I GAATGC 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 176, 200
PctI GAATGC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 2 cut(s) 7, 106
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PsiI TTATAA 1 cut(s) 68
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SatI GCNGC 2 cut(s) 6, 105
SchI GAGTC 1 cut(s) 103
SetI ASST 4 cut(s) 65, 77, 81, 218
SfaNI GCATC 1 cut(s) 179
Sse9I AATT 1 cut(s) 133
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 213
TaqI TCGA 1 cut(s) 89
TasI AATT 1 cut(s) 133
TatI WGTACW 1 cut(s) 242
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 35
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 2 cut(s) 27, 87
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.