Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009012

Physical Location & Seq

Genomic Coordinates Forward (+)

25780347 .. 25782633

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G284200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGAAAACTGTCAAGTTAGGGATGCAGAAGAAACCCGTTCATCAACTTCCTCTCCATCTCAATCTCAGACTCAGAATATGAAAACAGAAAACCAACCAGCACCCCAAGACAAAGAAGAAGAAGAAGAAAAGGAAAGAAATAGCATCTCAGAAACACCACCCAGTACCAAGTTTTATTCACCTCCTCTGTTCCAGTCCCCATCTCCACCATCCGATTCTCCAACAACACACTCAACCCATCAAGCCTACCACACTCATGAGTTCAGAGTCACACCTTCAGACACCAAGCCGGCATCGCCACCGGCCGTGCCGGCCCGGTCTTTCAAGGTCAAGCCCAAGGTCGTGGATCCCAAACCACAAGTTGGGTTTTCTGGGCTCGCAGAGGTTCAAGAAGAAAGTGGTGGTGCTACTGCTACTGGTACTAATCGTGGTGGTGTAAAGATGCGAACTTTGAGAGCCAACTTATCGATATTGAACAGGTCGAGGAGGGAGAACATGGTGAGGAAGGCTTTGCTTGGGTTTAGGATTTCTGGGTTTGTGTTCTGCTTGATCTCTTTCTCGGTTATGGCGGCTGACAAGAACCAGGGTTGGGCTTTAGATTCCTACTATCGGTACAAGGAGTTCAGGTACTGCTTGGCAGTGAATGTGATAGGATTTGTGTATTCAGGGCTGCAAACCTATGATTTAGCCTATTTCTTCACCAGCGGAAAACATGTAATGCAGCTTCATCTCCGCCATTACTTTGATTTCTTGATGGATCAGATTTTGACATACCTTTTGATATCGGCATCTTCATCCGCTGCAATTCGGGCTGACGACTGGGAGTCGAATTGGGGCAAAGACAAGTTCCCAGATATGGCTCGTGCGGCCGTGGCATTGTCCTTCCTTGCCTTTCTTGCCCTTGCCTCCAGCTCCCTCATCTCTGGTTACACACTTTGTAACCTGAAATCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

319

Amino Acids

35.48

Weight (kDa)

8.55

Isoelectric Point (pI)

55.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40300
fragaria_vesca	FvH4_6g50680 FvH4_6g50680 FvH4_6g50680 FvH4_6g50680
malus_domestica	MD09G1034100.v1.1
prunus_persica	Prupe.3G284200_v2.0.a1
pyrus_communis	pycom111g02710 pycom17g03190
rosa_chinensis	RchiOBHm_Chr2g0171451 RchiOBHm_Chr2g0171471
rosa_laevigata	RLG00000022015
rosa_multiflora	Rmu_sc0006783.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080640
rosa_rugosa	Rorug02G0554500
rosa_samantha	Rh2AG628700 Rh2BG639100 Rh2BG639400 Rh2CG607800 Rh2DG650200 Rh2DG656200
rosa_wichuraiana	Rw2G052080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	362
AciI	CCGC	5 cut(s)	569, 705, 733, 798, 866
AclWI	GGATC	3 cut(s)	341, 354, 765
AcoI	YGGCCR	2 cut(s)	303, 867
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	4 cut(s)	166, 421, 614, 629
AfiI	CCNNNNNNNGG	4 cut(s)	362, 589, 609, 856
AflIII	ACRYGT	1 cut(s)	712
AgsI	TTSAA	3 cut(s)	325, 389, 475
AhdI	GACNNNNNGTC	1 cut(s)	823
AjnI	CCWGG	1 cut(s)	582
AluBI	AGCT	2 cut(s)	724, 912
AluI	AGCT	2 cut(s)	724, 912
AlwI	GGATC	3 cut(s)	341, 354, 765
AlwNI	CAGNNNCTG	1 cut(s)	630
AoxI	GGCC	3 cut(s)	303, 312, 867
ApeKI	GCWGC	3 cut(s)	670, 721, 800
ArsI	GACNNNNNNTTYG	2 cut(s)	760, 792
AspS9I	GGNCC	1 cut(s)	313
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	3 cut(s)	171, 511, 691
BamHI	GGATCC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	378
BarI	GAAGNNNNNNTAC	2 cut(s)	708, 740
BauI	CACGAG	1 cut(s)	861
BbvI	GCAGC	3 cut(s)	657, 733, 787
BccI	CCATC	5 cut(s)	64, 208, 217, 246, 748
BceAI	ACGGC	2 cut(s)	290, 854
BciT130I	CCWGG	1 cut(s)	584
BcnI	CCSGG	1 cut(s)	316
BfaI	CTAG	1 cut(s)	955
BglI	GCCNNNNNGGC	1 cut(s)	311
BisI	GCNGC	5 cut(s)	570, 671, 722, 801, 867
BlsI	GCNGC	5 cut(s)	571, 672, 723, 802, 868
Bme1390I	CCNGG	2 cut(s)	316, 584
BmeRI	GACNNNNNGTC	1 cut(s)	823
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	2 cut(s)	316, 584
BmrI	ACTGGG	2 cut(s)	156, 829
BmsI	GCATC	5 cut(s)	13, 153, 302, 432, 797
BmuI	ACTGGG	2 cut(s)	156, 829
BpmI	CTGGAG	1 cut(s)	892
BpuMI	CCSGG	1 cut(s)	316
Bsa29I	ATCGAT	1 cut(s)	467
BsaJI	CCNNGG	3 cut(s)	336, 583, 870
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 611, 641
Bsc4I	CCNNNNNNNGG	4 cut(s)	362, 589, 609, 856
Bse118I	RCCGGY	3 cut(s)	289, 301, 310
Bse1I	ACTGG	4 cut(s)	162, 193, 421, 824
BseBI	CCWGG	1 cut(s)	584
BseCI	ATCGAT	1 cut(s)	467
BseDI	CCNNGG	3 cut(s)	336, 583, 870
BseGI	GGATG	3 cut(s)	28, 209, 794
BseLI	CCNNNNNNNGG	4 cut(s)	362, 589, 609, 856
BseMII	CTCAG	3 cut(s)	80, 86, 162
BseNI	ACTGG	4 cut(s)	162, 193, 421, 824
BseRI	GAGGAG	2 cut(s)	174, 499
BseX3I	CGGCCG	2 cut(s)	303, 867
BseXI	GCAGC	3 cut(s)	657, 733, 787
Bsh1285I	CGRYCG	2 cut(s)	306, 870
BshFI	GGCC	3 cut(s)	305, 314, 869
BshVI	ATCGAT	1 cut(s)	467
BsiEI	CGRYCG	2 cut(s)	306, 870
BsiSI	CCGG	4 cut(s)	290, 302, 311, 316
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	4 cut(s)	362, 589, 609, 856
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	3 cut(s)	305, 314, 869
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	3 cut(s)	346, 549, 757
BspACI	CCGC	5 cut(s)	569, 705, 733, 798, 866
BspANI	GGCC	3 cut(s)	305, 314, 869
BspCNI	CTCAG	3 cut(s)	79, 85, 161
BspDI	ATCGAT	1 cut(s)	467
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	3 cut(s)	341, 354, 765
BsrFI	RCCGGY	3 cut(s)	289, 301, 310
BsrI	ACTGG	4 cut(s)	162, 193, 421, 824
BssAI	RCCGGY	3 cut(s)	289, 301, 310
BssECI	CCNNGG	3 cut(s)	336, 583, 870
BssMI	GATC	3 cut(s)	346, 549, 757
BssSI	CACGAG	1 cut(s)	861
BssT1I	CCWWGG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	861
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	291, 312, 378
BstDEI	CTNAG	3 cut(s)	66, 72, 148
BstDSI	CCRYGG	1 cut(s)	870
BstF5I	GGATG	3 cut(s)	28, 209, 794
BstKTI	GATC	3 cut(s)	349, 552, 760
BstMBI	GATC	3 cut(s)	346, 549, 757
BstMCI	CGRYCG	2 cut(s)	306, 870
BstMWI	GCNNNNNNNGC	6 cut(s)	295, 311, 809, 866, 872, 896
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	716
BstSCI	CCNGG	2 cut(s)	314, 582
BstV1I	GCAGC	3 cut(s)	657, 733, 787
BstX2I	RGATCY	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	346
BstZI	CGGCCG	2 cut(s)	303, 867
Bsu15I	ATCGAT	1 cut(s)	467
BsuRI	GGCC	3 cut(s)	305, 314, 869
BsuTUI	ATCGAT	1 cut(s)	467
BtgI	CCRYGG	1 cut(s)	870
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	3 cut(s)	28, 209, 794
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	1 cut(s)	645
Cac8I	GCNNGC	3 cut(s)	291, 312, 378
CaiI	CAGNNNCTG	1 cut(s)	630
CciI	TCATGA	1 cut(s)	256
Cfr10I	RCCGGY	3 cut(s)	289, 301, 310
Cfr13I	GGNCC	1 cut(s)	313
ClaI	ATCGAT	1 cut(s)	467
Csp6I	GTAC	4 cut(s)	165, 420, 613, 628
CviAII	CATG	3 cut(s)	257, 496, 713
CviQI	GTAC	4 cut(s)	165, 420, 613, 628
DdeI	CTNAG	3 cut(s)	66, 72, 148
DpnI	GATC	3 cut(s)	348, 551, 759
DpnII	GATC	3 cut(s)	346, 549, 757
DriI	GACNNNNNGTC	1 cut(s)	823
EaeI	YGGCCR	2 cut(s)	303, 867
EagI	CGGCCG	2 cut(s)	303, 867
Eam1105I	GACNNNNNGTC	1 cut(s)	823
EciI	GGCGGA	1 cut(s)	722
EclXI	CGGCCG	2 cut(s)	303, 867
Eco130I	CCWWGG	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	783
Eco52I	CGGCCG	2 cut(s)	303, 867
Eco57I	CTGAAG	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	582
EcoRV	GATATC	1 cut(s)	783
EcoT14I	CCWWGG	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	3 cut(s)	260, 499, 716
FaiI	YATR	8 cut(s)	80, 258, 497, 566, 681, 714, 772, 857
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	3 cut(s)	256, 495, 712
Fnu4HI	GCNGC	5 cut(s)	570, 671, 722, 801, 867
FokI	GGATG	3 cut(s)	35, 196, 781
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	5 cut(s)	570, 671, 722, 801, 867
FspBI	CTAG	1 cut(s)	955
GluI	GCNGC	5 cut(s)	570, 671, 722, 801, 867
GsuI	CTGGAG	1 cut(s)	892
HaeIII	GGCC	3 cut(s)	305, 314, 869
HapII	CCGG	4 cut(s)	290, 302, 311, 316
Hin1II	CATG	3 cut(s)	260, 499, 716
HinfI	GANTC	5 cut(s)	70, 215, 267, 599, 824
HpaII	CCGG	4 cut(s)	290, 302, 311, 316
HphI	GGTGA	3 cut(s)	171, 511, 691
Hpy188I	TCNGA	7 cut(s)	69, 75, 151, 214, 266, 280, 762
Hpy188III	TCNNGA	3 cut(s)	257, 389, 751
HpyAV	CCTTC	3 cut(s)	285, 499, 892
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	4 cut(s)	26, 673, 721, 803
HpyF10VI	GCNNNNNNNGC	6 cut(s)	295, 311, 809, 866, 872, 896
HpyF3I	CTNAG	3 cut(s)	66, 72, 148
Hsp92II	CATG	3 cut(s)	260, 499, 716
KroI	GCCGGC	2 cut(s)	289, 310
KroNI	GCCGGC	2 cut(s)	291, 312
Kzo9I	GATC	3 cut(s)	346, 549, 757
LmnI	GCTCC	1 cut(s)	917
Lsp1109I	GCAGC	3 cut(s)	657, 733, 787
LweI	GCATC	5 cut(s)	13, 153, 302, 432, 797
MaeI	CTAG	1 cut(s)	955
MaeIII	GTNAC	3 cut(s)	268, 926, 938
MalI	GATC	3 cut(s)	348, 551, 759
MboI	GATC	3 cut(s)	346, 549, 757
MboII	GAAGA	8 cut(s)	41, 128, 131, 134, 137, 404, 688, 783
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	2 cut(s)	804, 829
MlyI	GAGTC	3 cut(s)	64, 276, 833
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	9 cut(s)	61, 192, 195, 376, 477, 480, 495, 916, 926
MroNI	GCCGGC	2 cut(s)	289, 310
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	705, 800
MspI	CCGG	4 cut(s)	290, 302, 311, 316
MspR9I	CCNGG	2 cut(s)	316, 584
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	6 cut(s)	295, 311, 809, 866, 872, 896
NaeI	GCCGGC	2 cut(s)	291, 312
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	3 cut(s)	346, 549, 757
NgoMIV	GCCGGC	2 cut(s)	289, 310
NlaIII	CATG	3 cut(s)	260, 499, 716
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	716
PagI	TCATGA	1 cut(s)	256
PciI	ACATGT	1 cut(s)	712
PdiI	GCCGGC	2 cut(s)	291, 312
PfeI	GAWTC	2 cut(s)	215, 599
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	5 cut(s)	571, 672, 723, 802, 868
PleI	GAGTC	3 cut(s)	64, 275, 832
PpsI	GAGTC	3 cut(s)	64, 275, 832
PscI	ACATGT	1 cut(s)	712
Psp6I	CCWGG	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	313
PsrI	GAACNNNNNNTAC	2 cut(s)	605, 637
PstNI	CAGNNNCTG	1 cut(s)	630
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	4 cut(s)	166, 421, 614, 629
RsaNI	GTAC	4 cut(s)	165, 420, 613, 628
RseI	CAYNNNNRTG	1 cut(s)	255
SatI	GCNGC	5 cut(s)	570, 671, 722, 801, 867
Sau3AI	GATC	3 cut(s)	346, 549, 757
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	3 cut(s)	64, 276, 833
ScrFI	CCNGG	2 cut(s)	316, 584
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	5 cut(s)	13, 153, 302, 432, 797
SfiI	GGCCNNNNNGGCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	2 cut(s)	804, 829
SsiI	CCGC	5 cut(s)	569, 705, 733, 798, 866
SspMI	CTAG	1 cut(s)	955
StyD4I	CCNGG	2 cut(s)	314, 582
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	3 cut(s)	467, 482, 827
TasI	AATT	2 cut(s)	804, 829
TauI	GCSGC	2 cut(s)	572, 869
TfiI	GAWTC	2 cut(s)	215, 599
TscAI	CASTG	1 cut(s)	645
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	3 cut(s)	670, 721, 800
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	4 cut(s)	30, 95, 716, 783
TspRI	CASTG	1 cut(s)	645
Van91I	CCANNNNNTGG	1 cut(s)	362
XceI	RCATGY	1 cut(s)	716
XspI	CTAG	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.