Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011349

Physical Location & Seq

Genomic Coordinates Forward (+)

37795999 .. 37798923

Gene Structure 2925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGGGAGGGAAGAAGATCACGAGCTTCTCCAAGAGCTCCGCCGCATGTTGGTCGCCTCCGCCGGCCAAGACAAACCACAGCTTCCACAAAAACGCTTCTCAGTCAAAAGCGCTTCTACTGATCATGACTCGGATAACAAGCTGGTATGCGTCACAAGCGGCGTTTCCTTCTTGGGTCTCGCCGTCGTCAACCGCCTCCTCCTCCGCGGCTACTCCGTCCGCATCATCGTTGACAACTCCGTGGACGTTGAGGAACTGAGGGAGATGACGACGGCGAATGTTAACGTCACTGTAGTTATGGCGAAGCTAGCAGAAGTTGAAAGCTTATCACAAGCATTTCAGGGATGTCGTGGCGTCTTCCACACCTCTGGATATACCGACCCTGCTGGCCTCTCGGGGTACACTAAATCCATGGCTGGGATAGAAGTGATGGCAACTGAGAATGTGATGAGGGCATGCGTGACAGCGACGGTAAGAAGATGTGTGCTCACTTCTTCACTTTTAGCCTGTGTTTGGCAAGAGCAAAATGACCTCTCCACAATCCCTGTGATCAACCATGACTCCTGGAGCAATGAGTCACTCTGCATACACAAGAAGCTGTGGTATGCTTTGGGCAAGCTTAGAGCAGAGAAAGCTGCATGGACATTAGCAAAAGAAACTGGGTTGAAGCTCACTACAATCTGCCCAGGTCTCATTACTGGTCCTGAATTTTGCTCAAGAAACTCAACAGCGACAATTGCATATCTCAAAGGAGCGCAAGAGATGTACCGAAGTGGCGTGCTAGCAACCGTGGACGTGATGAGACTAGCAGAAGCACATGTAAGTGTGTATGAGGAAATAAAAAAATCGGCATTTGGTAGATACATTTGCTTTGATCAAGTCATTGAAACAGAGAAGCAGGCAGAGAAGCTAGCAGGGGAGACGAGTCTGACAAGGAACAAGATATGTGGAAATGAAGAAGGCTCTAGCATTGTTCATCATCTTAGATATGAATTGTCCAATAAGAAACTTACAAATCTCTTGTCAAGAACACTGAGGAGTTGCAACAACCAAAACCAAGAATACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009964 GO:0009987 GO:0016491 GO:0016627 GO:0016628 GO:0019222 GO:0019438 GO:0019748 GO:0033729 GO:0042742 GO:0043207 GO:0044237 GO:0044249 GO:0044550 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0071704 GO:0080090 GO:0098542 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

3Beta_HSD Epimerase

Protein Analysis

357

Amino Acids

39.5

Weight (kDa)

7.53

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	46 - 173	1.7e-08	NmrA-like family
Epimerase	PF01370	50 - 246	3.7e-11	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	51 - 260	4.1e-14	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10	PF13460	58 - 234	3.1e-12	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14700 AT5G14700
fragaria_vesca	FvH4_6g50850
malus_domestica	MD09G1031700.v1.1 MD17G1033400.v1.1
prunus_persica	Prupe.3G286200_v2.0.a1
pyrus_communis	pycom111g02510 pycom17g03060
rosa_chinensis	RchiOBHm_Chr2g0172231
rosa_laevigata	RLG00000022098
rosa_multiflora	Rmu_co8477553.1_g000001 Rmu_sc0024549.1_g000006 Rmu_sc0025855.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080040
rosa_rugosa	Rorug02G0558000
rosa_samantha	Rh2AG633100 Rh2BG646700 Rh2CG613600 Rh2DG661500
rosa_wichuraiana	Rw2G052410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	207
AciI	CCGC	8 cut(s)	40, 43, 60, 159, 193, 205, 207, 220
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	707
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	2 cut(s)	401, 767
AfeI	AGCGCT	1 cut(s)	112
AfiI	CCNNNNNNNGG	3 cut(s)	49, 417, 513
AflIII	ACRYGT	1 cut(s)	817
AgsI	TTSAA	3 cut(s)	320, 667, 887
AjiI	CACGTC	1 cut(s)	796
AjnI	CCWGG	2 cut(s)	563, 685
Alw21I	GWGCWC	2 cut(s)	39, 489
Alw26I	GTCTC	4 cut(s)	182, 695, 796, 914
Ama87I	CYCGRG	1 cut(s)	394
Aor51HI	AGCGCT	1 cut(s)	112
AoxI	GGCC	2 cut(s)	64, 388
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	1 cut(s)	707
ArsI	GACNNNNNNTTYG	2 cut(s)	1007, 1039
AspLEI	GCGC	2 cut(s)	113, 757
AspS9I	GGNCC	1 cut(s)	701
AsuNHI	GCTAGC	3 cut(s)	307, 781, 910
AvaI	CYCGRG	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	701
BanII	GRGCYC	1 cut(s)	39
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	349
Bbv12I	GWGCWC	2 cut(s)	39, 489
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	1 cut(s)	424
BceAI	ACGGC	2 cut(s)	167, 288
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	2 cut(s)	565, 687
BclI	TGATCA	3 cut(s)	121, 549, 874
BcoDI	GTCTC	4 cut(s)	182, 695, 796, 914
BfaI	CTAG	5 cut(s)	308, 782, 806, 911, 966
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	114
BisI	GCNGC	4 cut(s)	43, 160, 208, 636
BlsI	GCNGC	4 cut(s)	44, 161, 209, 637
Bme1390I	CCNGG	2 cut(s)	565, 687
Bme18I	GGWCC	1 cut(s)	701
BmeT110I	CYCGRG	1 cut(s)	394
BmgBI	CACGTC	1 cut(s)	796
BmgT120I	GGNCC	1 cut(s)	701
BmrFI	CCNGG	2 cut(s)	565, 687
BmrI	ACTGGG	1 cut(s)	669
BmsI	GCATC	1 cut(s)	231
BmtI	GCTAGC	3 cut(s)	311, 785, 914
BmuI	ACTGGG	1 cut(s)	669
BpiI	GAAGAC	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	586
BpuEI	CTTGAG	1 cut(s)	700
BsaHI	GRCGYC	1 cut(s)	354
BsaI	GGTCTC	2 cut(s)	182, 695
BsaJI	CCNNGG	5 cut(s)	205, 240, 411, 685, 789
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 417, 513
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	664, 703
Bse3DI	GCAATG	1 cut(s)	577
BseBI	CCWGG	2 cut(s)	565, 687
BseDI	CCNNGG	5 cut(s)	205, 240, 411, 685, 789
BseGI	GGATG	1 cut(s)	350
BseLI	CCNNNNNNNGG	3 cut(s)	49, 417, 513
BseMI	GCAATG	1 cut(s)	577
BseMII	CTCAG	4 cut(s)	114, 248, 429, 1025
BseNI	ACTGG	2 cut(s)	664, 703
BseRI	GAGGAG	3 cut(s)	188, 191, 1051
BseXI	GCAGC	1 cut(s)	622
BseYI	CCCAGC	1 cut(s)	416
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	66, 390
BsiHKAI	GWGCWC	2 cut(s)	39, 489
BsiHKCI	CYCGRG	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	49, 417, 513
BsmAI	GTCTC	4 cut(s)	182, 695, 796, 914
BsmBI	CGTCTC	1 cut(s)	914
BsnI	GGCC	2 cut(s)	66, 390
Bso31I	GGTCTC	2 cut(s)	182, 695
BsoBI	CYCGRG	1 cut(s)	394
Bsp1286I	GDGCHC	2 cut(s)	39, 489
Bsp143I	GATC	4 cut(s)	16, 121, 549, 874
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	8 cut(s)	40, 43, 60, 159, 193, 205, 207, 220
BspANI	GGCC	2 cut(s)	66, 390
BspCNI	CTCAG	4 cut(s)	113, 249, 430, 1026
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	124
BspOI	GCTAGC	3 cut(s)	311, 785, 914
BspTNI	GGTCTC	2 cut(s)	182, 695
BsrDI	GCAATG	1 cut(s)	577
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	664, 703
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	5 cut(s)	205, 240, 411, 685, 789
BssMI	GATC	4 cut(s)	16, 121, 549, 874
BssNI	GRCGYC	1 cut(s)	354
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	565, 687
Bst4CI	ACNGT	3 cut(s)	292, 472, 790
BstACI	GRCGYC	1 cut(s)	354
BstC8I	GCNNGC	9 cut(s)	64, 309, 388, 457, 617, 779, 783, 900, 912
BstDEI	CTNAG	6 cut(s)	100, 257, 438, 620, 983, 1034
BstDSI	CCRYGG	4 cut(s)	205, 240, 411, 789
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	113, 757
BstKTI	GATC	4 cut(s)	19, 124, 552, 877
BstMAI	GTCTC	4 cut(s)	182, 695, 796, 914
BstMBI	GATC	4 cut(s)	16, 121, 549, 874
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 308, 632, 737
BstNI	CCWGG	2 cut(s)	565, 687
BstNSI	RCATGY	3 cut(s)	49, 459, 821
BstSCI	CCNGG	2 cut(s)	563, 685
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	622
BstV2I	GAAGAC	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	66, 390
BtgI	CCRYGG	4 cut(s)	205, 240, 411, 789
BtrI	CACGTC	1 cut(s)	796
BtsCI	GGATG	1 cut(s)	350
BtsIMutI	CAGTG	2 cut(s)	288, 1031
Cac8I	GCNNGC	9 cut(s)	64, 309, 388, 457, 617, 779, 783, 900, 912
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	2 cut(s)	113, 757
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	701
Cfr42I	CCGCGG	1 cut(s)	208
CseI	GACGC	2 cut(s)	139, 343
Csp6I	GTAC	2 cut(s)	400, 766
CspCI	CAANNNNNGTGG	2 cut(s)	928, 963
CviAII	CATG	7 cut(s)	46, 125, 412, 456, 557, 639, 818
CviQI	GTAC	2 cut(s)	400, 766
DdeI	CTNAG	6 cut(s)	100, 257, 438, 620, 983, 1034
DpnI	GATC	4 cut(s)	18, 123, 551, 876
DpnII	GATC	4 cut(s)	16, 121, 549, 874
EaeI	YGGCCR	1 cut(s)	64
EciI	GGCGGA	2 cut(s)	29, 49
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	2 cut(s)	182, 695
Eco47I	GGWCC	1 cut(s)	701
Eco47III	AGCGCT	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	394
EcoICRI	GAGCTC	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	563, 685
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	411
Esp3I	CGTCTC	1 cut(s)	914
FaeI	CATG	7 cut(s)	49, 128, 415, 459, 560, 642, 821
FatI	CATG	7 cut(s)	45, 124, 411, 455, 556, 638, 817
FbaI	TGATCA	3 cut(s)	121, 549, 874
Fnu4HI	GCNGC	4 cut(s)	43, 160, 208, 636
FokI	GGATG	1 cut(s)	357
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	4 cut(s)	43, 160, 208, 636
FspBI	CTAG	5 cut(s)	308, 782, 806, 911, 966
GlaI	GCGC	2 cut(s)	112, 756
GluI	GCNGC	4 cut(s)	43, 160, 208, 636
GsaI	CCCAGC	1 cut(s)	420
GsuI	CTGGAG	1 cut(s)	586
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	66, 390
HapII	CCGG	1 cut(s)	63
HgaI	GACGC	2 cut(s)	139, 343
HhaI	GCGC	2 cut(s)	113, 757
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	7 cut(s)	49, 128, 415, 459, 560, 642, 821
Hin6I	GCGC	2 cut(s)	111, 755
HinP1I	GCGC	2 cut(s)	111, 755
HincII	GTYRAC	3 cut(s)	190, 232, 283
HindII	GTYRAC	3 cut(s)	190, 232, 283
HindIII	AAGCTT	2 cut(s)	322, 617
HinfI	GANTC	4 cut(s)	128, 560, 575, 925
HpaI	GTTAAC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	63
Hpy166II	GTNNAC	6 cut(s)	190, 232, 244, 283, 402, 793
Hpy188I	TCNGA	2 cut(s)	133, 930
Hpy188III	TCNNGA	6 cut(s)	20, 125, 369, 704, 717, 1026
Hpy8I	GTNNAC	6 cut(s)	190, 232, 244, 283, 402, 793
Hpy99I	CGWCG	3 cut(s)	188, 274, 472
HpyAV	CCTTC	2 cut(s)	178, 953
HpyCH4III	ACNGT	3 cut(s)	292, 472, 790
HpyCH4IV	ACGT	3 cut(s)	246, 285, 795
HpyCH4V	TGCA	4 cut(s)	585, 638, 740, 1044
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 308, 632, 737
HpyF3I	CTNAG	6 cut(s)	100, 257, 438, 620, 983, 1034
HpySE526I	ACGT	3 cut(s)	246, 285, 795
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	7 cut(s)	49, 128, 415, 459, 560, 642, 821
HspAI	GCGC	2 cut(s)	111, 755
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Ksp22I	TGATCA	3 cut(s)	121, 549, 874
KspAI	GTTAAC	1 cut(s)	283
KspI	CCGCGG	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	16, 121, 549, 874
LmnI	GCTCC	3 cut(s)	42, 567, 752
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	5 cut(s)	308, 782, 806, 911, 966
MaeII	ACGT	3 cut(s)	246, 285, 795
MaeIII	GTNAC	4 cut(s)	151, 286, 460, 576
MalI	GATC	4 cut(s)	18, 123, 551, 876
MboI	GATC	4 cut(s)	16, 121, 549, 874
MboII	GAAGA	6 cut(s)	23, 26, 349, 486, 489, 968
MfeI	CAATTG	1 cut(s)	735
MhlI	GDGCHC	2 cut(s)	39, 489
MluCI	AATT	3 cut(s)	707, 735, 992
MlyI	GAGTC	4 cut(s)	122, 554, 584, 934
MroNI	GCCGGC	1 cut(s)	62
MseI	TTAA	2 cut(s)	282, 1069
MslI	CAYNNNNRTG	1 cut(s)	822
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	2 cut(s)	565, 687
MunI	CAATTG	1 cut(s)	735
MvaI	CCWGG	2 cut(s)	565, 687
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	156, 308, 632, 737
NaeI	GCCGGC	1 cut(s)	64
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	4 cut(s)	16, 121, 549, 874
NgoMIV	GCCGGC	1 cut(s)	62
NheI	GCTAGC	3 cut(s)	307, 781, 910
NlaIII	CATG	7 cut(s)	49, 128, 415, 459, 560, 642, 821
NmuCI	GTSAC	4 cut(s)	151, 286, 460, 576
NspI	RCATGY	3 cut(s)	49, 459, 821
PaeI	GCATGC	1 cut(s)	459
PagI	TCATGA	1 cut(s)	124
PciI	ACATGT	1 cut(s)	817
PdiI	GCCGGC	1 cut(s)	64
PfoI	TCCNGGA	1 cut(s)	563
PkrI	GCNGC	4 cut(s)	44, 161, 209, 637
PleI	GAGTC	4 cut(s)	122, 554, 583, 933
PpsI	GAGTC	4 cut(s)	122, 554, 583, 933
PscI	ACATGT	1 cut(s)	817
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	2 cut(s)	563, 685
PspFI	CCCAGC	1 cut(s)	416
PspGI	CCWGG	2 cut(s)	563, 685
PspPI	GGNCC	1 cut(s)	701
RsaI	GTAC	2 cut(s)	401, 767
RsaNI	GTAC	2 cut(s)	400, 766
RseI	CAYNNNNRTG	1 cut(s)	822
SacI	GAGCTC	1 cut(s)	39
SacII	CCGCGG	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	282, 1069
SatI	GCNGC	4 cut(s)	43, 160, 208, 636
Sau3AI	GATC	4 cut(s)	16, 121, 549, 874
Sau96I	GGNCC	1 cut(s)	701
SchI	GAGTC	4 cut(s)	122, 554, 584, 934
ScrFI	CCNGG	2 cut(s)	565, 687
SduI	GDGCHC	2 cut(s)	39, 489
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	291
Sfr303I	CCGCGG	1 cut(s)	208
SgrBI	CCGCGG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	1 cut(s)	822
SmlI	CTYRAG	1 cut(s)	715
SmoI	CTYRAG	1 cut(s)	715
SphI	GCATGC	1 cut(s)	459
Sse9I	AATT	3 cut(s)	707, 735, 992
SsiI	CCGC	8 cut(s)	40, 43, 60, 159, 193, 205, 207, 220
SspMI	CTAG	5 cut(s)	308, 782, 806, 911, 966
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	563, 685
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	3 cut(s)	292, 472, 790
TaiI	ACGT	3 cut(s)	249, 288, 798
TasI	AATT	3 cut(s)	707, 735, 992
TauI	GCSGC	3 cut(s)	45, 162, 210
Tru1I	TTAA	2 cut(s)	282, 1069
Tru9I	TTAA	2 cut(s)	282, 1069
TscAI	CASTG	2 cut(s)	295, 1038
TseFI	GTSAC	4 cut(s)	151, 286, 460, 576
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	4 cut(s)	151, 286, 460, 576
TspDTI	ATGAA	3 cut(s)	965, 969, 1005
TspGWI	ACGGA	2 cut(s)	205, 229
TspRI	CASTG	2 cut(s)	295, 1038
VpaK11BI	GGWCC	1 cut(s)	701
XapI	RAATTY	1 cut(s)	707
XceI	RCATGY	3 cut(s)	49, 459, 821
XspI	CTAG	5 cut(s)	308, 782, 806, 911, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.