Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011349

Physical Location & Seq

Genomic Coordinates Forward (+)

86600760 .. 86603621

Gene Structure 2862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG646700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGGATTGCTCGTTTACAAGAAAGGGAAGAAGATCACGAGCTATTACAAGAGCTCCGCCGCATGTTGGTCTCCTCCGCCGGCCAAGACAAACCACACCTTCCACAAAAGCACTTCTCATCCAAAAGCGCTTATGAAGATGACTCGGAAGAAAAGCTAGTCTGCGTTACAAGCGGCGTTTCCTTCTTGGGCCTCGCCGTCGTCAACCGCCTCCTCCTCCGCGGCTACTCCGTCCGCATCATCGTTAATAACTCCGTGGACGTTGAGAAACTGAGGGAGATGACGACGGCGAACGTTAACGTCACTGTAGTTATGGCTAAGCTAGCAGAAGTTGAAAGCTTATCACAAGCATTTCAGGGCTGTCGTGGCGTCTTCCACACCTCTGGATTTACTGATCCTGCTGGCCTTTCTGGGTACACTGTGAGTCCATTGTTGTCTGTCACCGTCACTCTAATTCTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009964 GO:0009987 GO:0016491 GO:0016627 GO:0016628 GO:0019222 GO:0019438 GO:0019748 GO:0033729 GO:0042742 GO:0043207 GO:0044237 GO:0044249 GO:0044550 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0071704 GO:0080090 GO:0098542 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

3Beta_HSD Epimerase

Protein Analysis

154

Amino Acids

16.89

Weight (kDa)

5.79

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	51 - 129	2.3e-08	NmrA-like family
NAD_binding_10	PF13460	63 - 129	2.1e-06	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14700 AT5G14700
fragaria_vesca	FvH4_6g50850
malus_domestica	MD09G1031700.v1.1 MD17G1033400.v1.1
prunus_persica	Prupe.3G286200_v2.0.a1
pyrus_communis	pycom111g02510 pycom17g03060
rosa_chinensis	RchiOBHm_Chr2g0172231
rosa_laevigata	RLG00000022098
rosa_multiflora	Rmu_co8477553.1_g000001 Rmu_sc0024549.1_g000006 Rmu_sc0025855.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080040
rosa_rugosa	Rorug02G0558000
rosa_samantha	Rh2AG633100 Rh2BG646700 Rh2CG613600 Rh2DG661500
rosa_wichuraiana	Rw2G052410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	222
AciI	CCGC	8 cut(s)	58, 61, 78, 174, 208, 220, 222, 235
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	1 cut(s)	82
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	1 cut(s)	416
AfeI	AGCGCT	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	335
AluBI	AGCT	5 cut(s)	43, 55, 157, 322, 339
AluI	AGCT	5 cut(s)	43, 55, 157, 322, 339
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	389
Aor51HI	AGCGCT	1 cut(s)	130
AoxI	GGCC	3 cut(s)	82, 190, 403
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	433
AsuNHI	GCTAGC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	57
BceAI	ACGGC	2 cut(s)	182, 303
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	2 cut(s)	158, 323
BfmI	CTRYAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	132
BisI	GCNGC	3 cut(s)	61, 175, 223
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	3 cut(s)	62, 176, 224
BmgT120I	GGNCC	1 cut(s)	190
BmsI	GCATC	1 cut(s)	246
BmtI	GCTAGC	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	364
Bpu1102I	GCTNAGC	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	220, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse118I	RCCGGY	1 cut(s)	80
BseDI	CCNNGG	2 cut(s)	220, 255
BseGI	GGATG	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	263
BseRI	GAGGAG	3 cut(s)	64, 203, 206
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	84, 192, 405
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	76
BsnI	GGCC	3 cut(s)	84, 192, 405
Bso31I	GGTCTC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	34, 394
Bsp1720I	GCTNAGC	1 cut(s)	318
BspACI	CCGC	8 cut(s)	58, 61, 78, 174, 208, 220, 222, 235
BspANI	GGCC	3 cut(s)	84, 192, 405
BspCNI	CTCAG	1 cut(s)	264
BspFNI	CGCG	1 cut(s)	222
BspOI	GCTAGC	1 cut(s)	326
BspPI	GGATC	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	220, 255
BssMI	GATC	2 cut(s)	34, 394
BssNI	GRCGYC	1 cut(s)	369
BssSI	CACGAG	1 cut(s)	38
Bst2BI	CACGAG	1 cut(s)	38
Bst4CI	ACNGT	3 cut(s)	307, 421, 445
BstACI	GRCGYC	1 cut(s)	369
BstC8I	GCNNGC	3 cut(s)	82, 324, 403
BstDEI	CTNAG	2 cut(s)	272, 318
BstDSI	CCRYGG	2 cut(s)	220, 255
BstF5I	GGATG	1 cut(s)	119
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	2 cut(s)	37, 397
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	2 cut(s)	34, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 323, 366
BstNSI	RCATGY	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	306
BstUI	CGCG	1 cut(s)	222
BstV2I	GAAGAC	1 cut(s)	364
BstXI	CCANNNNNNTGG	1 cut(s)	383
BsuRI	GGCC	3 cut(s)	84, 192, 405
BtgI	CCRYGG	2 cut(s)	220, 255
BtsCI	GGATG	1 cut(s)	119
BtsIMutI	CAGTG	2 cut(s)	303, 417
Cac8I	GCNNGC	3 cut(s)	82, 324, 403
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	190
Cfr42I	CCGCGG	1 cut(s)	223
CseI	GACGC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	1 cut(s)	64
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	2 cut(s)	272, 318
DpnI	GATC	2 cut(s)	36, 396
DpnII	GATC	2 cut(s)	34, 394
EaeI	YGGCCR	1 cut(s)	82
EciI	GGCGGA	2 cut(s)	47, 67
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	76
Eco47III	AGCGCT	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	1 cut(s)	67
FaiI	YATR	3 cut(s)	65, 135, 314
FatI	CATG	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	61, 175, 223
FokI	GGATG	1 cut(s)	106
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	3 cut(s)	61, 175, 223
FspBI	CTAG	2 cut(s)	158, 323
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	3 cut(s)	61, 175, 223
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	84, 192, 405
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	358
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	2 cut(s)	205, 298
HindII	GTYRAC	2 cut(s)	205, 298
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	2 cut(s)	143, 424
HpaI	GTTAAC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	5 cut(s)	17, 205, 259, 298, 417
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	38, 384
Hpy8I	GTNNAC	5 cut(s)	17, 205, 259, 298, 417
Hpy99I	CGWCG	2 cut(s)	203, 289
HpyAV	CCTTC	2 cut(s)	110, 193
HpyCH4III	ACNGT	3 cut(s)	307, 421, 445
HpyCH4IV	ACGT	3 cut(s)	261, 294, 300
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 323, 366
HpyF3I	CTNAG	2 cut(s)	272, 318
HpySE526I	ACGT	3 cut(s)	261, 294, 300
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	129
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
KspAI	GTTAAC	1 cut(s)	298
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	34, 394
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	6 cut(s)	94, 341, 369, 387, 396, 411
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	158, 323
MaeII	ACGT	3 cut(s)	261, 294, 300
MaeIII	GTNAC	4 cut(s)	166, 301, 439, 445
MalI	GATC	2 cut(s)	36, 396
MboI	GATC	2 cut(s)	34, 394
MboII	GAAGA	5 cut(s)	41, 44, 149, 161, 364
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	2 cut(s)	453, 459
MlyI	GAGTC	2 cut(s)	137, 433
MnlI	CCTC	7 cut(s)	85, 203, 221, 224, 227, 267, 391
MroNI	GCCGGC	1 cut(s)	80
MseI	TTAA	3 cut(s)	246, 297, 463
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	1 cut(s)	81
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	171, 323, 366
NaeI	GCCGGC	1 cut(s)	82
NdeII	GATC	2 cut(s)	34, 394
NgoMIV	GCCGGC	1 cut(s)	80
NheI	GCTAGC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	67
NmuCI	GTSAC	3 cut(s)	301, 439, 445
NspI	RCATGY	1 cut(s)	67
PdiI	GCCGGC	1 cut(s)	82
PkrI	GCNGC	3 cut(s)	62, 176, 224
PleI	GAGTC	2 cut(s)	137, 432
PpsI	GAGTC	2 cut(s)	137, 432
Psp124BI	GAGCTC	1 cut(s)	57
Psp1406I	AACGTT	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	190
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SacI	GAGCTC	1 cut(s)	57
SacII	CCGCGG	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	246, 297, 463
SatI	GCNGC	3 cut(s)	61, 175, 223
Sau3AI	GATC	2 cut(s)	34, 394
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	2 cut(s)	137, 433
SduI	GDGCHC	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	306
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
Sse9I	AATT	2 cut(s)	453, 459
SsiI	CCGC	8 cut(s)	58, 61, 78, 174, 208, 220, 222, 235
SspMI	CTAG	2 cut(s)	158, 323
SstI	GAGCTC	1 cut(s)	57
TaaI	ACNGT	3 cut(s)	307, 421, 445
TaiI	ACGT	3 cut(s)	264, 297, 303
TasI	AATT	2 cut(s)	453, 459
TauI	GCSGC	3 cut(s)	63, 177, 225
Tru1I	TTAA	3 cut(s)	246, 297, 463
Tru9I	TTAA	3 cut(s)	246, 297, 463
TscAI	CASTG	2 cut(s)	310, 424
TseFI	GTSAC	3 cut(s)	301, 439, 445
Tsp45I	GTSAC	3 cut(s)	301, 439, 445
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	2 cut(s)	220, 244
TspRI	CASTG	2 cut(s)	310, 424
XceI	RCATGY	1 cut(s)	67
XspI	CTAG	2 cut(s)	158, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.