MD09G1031700.v1.1

Belongs to the 3-beta-HSD family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
1902530 .. 1907380
4851 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1031700.v1.1.491

Sequence Viewer

Length: 1095 bp
ATGGTCGAAATGGGGATTGTGGGTTTGGAAGAGAGGGTGAACATCGAGGTGCAGGAGTTCTGCCGTGCGTTGGTGGCCTCCGCCGGCCTCCACCGCAGAAAAGACGACCACCAGCAACCCGACTGCAAGCGTTTCGACTCGAGGGGTGATTATGAACAAGACATGTTGGTGTGTGTCACTAGCGGCGTTTCCTTCTTAGGCCTTGCCATCGTTGACCGTCTCCTCCACCGTGGCTACTCCGTCCGCCTCATCGTTGACAACCAAGAAGATGCAGAAATAATGAGGGAGATGAGGACAAGCGGCACCAACAGCGATCGCATATCTGCAGTTATTGCGAAGCTAACCGACACCGACGTTGTTGAAAGCTTGTCACACGCGTTCCATGGCTGTCGTGGCGTTTTCCACACCTCTGCATTTGTTGACCCCGCTGGCCTCTCTGGTTACACTAAATCCATGGCTGAGATAGAAGTGAAGGCAAGTGAGAATGTGATGAAGGCATGTGCAATGACGCCATCTGTGAGAAAATGTGTGCTGACTTCTTCACTTTTAGCCTGCGTTTGGCAAGATAGCTCCCAGAATTTGAACTTCTCCCGTGTGATTAACCATAACCACTGGAGCAGTGAGTCACTCTGCATAGATAAAAAGCTCTGGTATGCATTGGGCAAGCTGAGGGCAGAGAAAGCTGCATGGAAAATAGCCGAGGAAAGGGGGTTGAAGTTGACCACCATCTGCCCGGCTCTCATTACCGGCCCTGAAATTTCCACTAGAAATCCAACCGCAACTCTTGCATATCTCAAGGCGCAAGAAATGTACCAAAGTGGAGTGCTAGCCACAGTGGATATAACAAGACTGGCAGAGGCACATGTAGGGGTGTTTGAGGCAATGAACAAGGCAGCATTTGGCAGATACATCTGGTTCGATCGAGTCATTGACGGAGAAGAAGAGGCCGAGAAGTTAGCAGAGGCGACGGGCATGTCGAAGAACAAGATCCTGGGCAATGGCGGCTCTAACGTTGTCCAGAATCGATTCGAATTGTCGAACAAGAAGCTTACAAATCTTTTGACGGGAAGAGTACATTGCTCTTACCATTCATAA

Protein Analysis

365

Amino Acids

40.35

Weight (kDa)

6.61

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 58 - 261 1.6e-08 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 59 - 274 4.7e-11 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10 PF13460 66 - 252 2.8e-06 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011349)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 973
AccB1I GGYRCC 1 cut(s) 302
AccII CGCG 1 cut(s) 377
AciI CCGC 8 cut(s) 81, 94, 183, 244, 300, 426, 777, 1002
AclI AACGTT 1 cut(s) 1011
AclWI GGATC 1 cut(s) 982
AcsI RAATTY 2 cut(s) 577, 756
AcyI GRCGYC 1 cut(s) 509
AfaI GTAC 2 cut(s) 812, 1074
AfiI CCNNNNNNNGG 3 cut(s) 70, 558, 705
AflIII ACRYGT 3 cut(s) 162, 375, 862
AgsI TTSAA 3 cut(s) 362, 583, 715
AjnI CCWGG 1 cut(s) 990
AluBI AGCT 7 cut(s) 340, 366, 570, 646, 667, 683, 1048
AluI AGCT 7 cut(s) 340, 366, 570, 646, 667, 683, 1048
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 1 cut(s) 982
Ama87I CYCGRG 1 cut(s) 139
AoxI GGCC 6 cut(s) 75, 85, 199, 430, 748, 945
ApeKI GCWGC 2 cut(s) 683, 893
ApoI RAATTY 2 cut(s) 577, 756
AsiSI GCGATCGC 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 1025
AspLEI GCGC 1 cut(s) 802
AspS9I GGNCC 1 cut(s) 749
AsuC2I CCSGG 1 cut(s) 734
AsuHPI GGTGA 2 cut(s) 49, 158
AsuII TTCGAA 1 cut(s) 1029
AsuNHI GCTAGC 1 cut(s) 826
AvaI CYCGRG 1 cut(s) 139
BanI GGYRCC 1 cut(s) 302
BbvCI CCTCAGC 1 cut(s) 668
BbvI GCAGC 2 cut(s) 670, 905
BccI CCATC 3 cut(s) 215, 520, 734
BceAI ACGGC 1 cut(s) 48
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 992
BcnI CCSGG 1 cut(s) 734
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 3 cut(s) 180, 765, 827
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 5 cut(s) 184, 301, 684, 894, 1003
BlsI GCNGC 5 cut(s) 185, 302, 685, 895, 1004
Bme1390I CCNGG 2 cut(s) 734, 992
BmeT110I CYCGRG 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 749
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 2 cut(s) 734, 992
BmsI GCATC 1 cut(s) 259
BmtI GCTAGC 1 cut(s) 830
BpmI CTGGAG 1 cut(s) 634
Bpu10I CCTNAGC 1 cut(s) 668
Bpu14I TTCGAA 1 cut(s) 1029
BpuEI CTTGAG 1 cut(s) 779
BpuMI CCSGG 1 cut(s) 734
Bsa29I ATCGAT 1 cut(s) 1024
BsaHI GRCGYC 1 cut(s) 509
BsaJI CCNNGG 5 cut(s) 229, 382, 453, 699, 991
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 558, 705
Bse118I RCCGGY 2 cut(s) 83, 746
Bse1I ACTGG 2 cut(s) 617, 855
Bse3DI GCAATG 4 cut(s) 510, 888, 1003, 1075
BseBI CCWGG 1 cut(s) 992
BseCI ATCGAT 1 cut(s) 1024
BseDI CCNNGG 5 cut(s) 229, 382, 453, 699, 991
BseLI CCNNNNNNNGG 3 cut(s) 70, 558, 705
BseMI GCAATG 4 cut(s) 510, 888, 1003, 1075
BseMII CTCAG 2 cut(s) 450, 659
BseNI ACTGG 2 cut(s) 617, 855
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 2 cut(s) 670, 905
BsgI GTGCAG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 377
Bsh1285I CGRYCG 2 cut(s) 316, 922
BshFI GGCC 6 cut(s) 77, 87, 201, 432, 750, 947
BshNI GGYRCC 1 cut(s) 302
BshVI ATCGAT 1 cut(s) 1024
BsiEI CGRYCG 2 cut(s) 316, 922
BsiHKCI CYCGRG 1 cut(s) 139
BsiSI CCGG 3 cut(s) 84, 734, 747
BslI CCNNNNNNNGG 3 cut(s) 70, 558, 705
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsnI GGCC 6 cut(s) 77, 87, 201, 432, 750, 947
BsoBI CYCGRG 1 cut(s) 139
Bsp119I TTCGAA 1 cut(s) 1029
Bsp143I GATC 3 cut(s) 313, 919, 987
Bsp19I CCATGG 2 cut(s) 382, 453
BspACI CCGC 8 cut(s) 81, 94, 183, 244, 300, 426, 777, 1002
BspANI GGCC 6 cut(s) 77, 87, 201, 432, 750, 947
BspCNI CTCAG 2 cut(s) 451, 660
BspDI ATCGAT 1 cut(s) 1024
BspFNI CGCG 1 cut(s) 377
BspLI GGNNCC 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 328
BspOI GCTAGC 1 cut(s) 830
BspPI GGATC 1 cut(s) 982
BspT104I TTCGAA 1 cut(s) 1029
BspT107I GGYRCC 1 cut(s) 302
BsrDI GCAATG 4 cut(s) 510, 888, 1003, 1075
BsrFI RCCGGY 2 cut(s) 83, 746
BsrI ACTGG 2 cut(s) 617, 855
BssAI RCCGGY 2 cut(s) 83, 746
BssECI CCNNGG 5 cut(s) 229, 382, 453, 699, 991
BssMI GATC 3 cut(s) 313, 919, 987
BssNI GRCGYC 1 cut(s) 509
BssT1I CCWWGG 2 cut(s) 382, 453
Bst2UI CCWGG 1 cut(s) 992
Bst4CI ACNGT 3 cut(s) 218, 230, 835
Bst6I CTCTTC 3 cut(s) 24, 936, 1063
BstACI GRCGYC 1 cut(s) 509
BstAPI GCANNNNNTGC 2 cut(s) 332, 785
BstBI TTCGAA 1 cut(s) 1029
BstC8I GCNNGC 6 cut(s) 85, 128, 430, 553, 665, 828
BstDEI CTNAG 3 cut(s) 196, 459, 668
BstDSI CCRYGG 3 cut(s) 229, 382, 453
BstFNI CGCG 1 cut(s) 377
BstHHI GCGC 1 cut(s) 802
BstKTI GATC 3 cut(s) 316, 922, 990
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 3 cut(s) 313, 919, 987
BstMCI CGRYCG 2 cut(s) 316, 922
BstMWI GCNNNNNNNGC 8 cut(s) 74, 93, 309, 332, 393, 680, 785, 1002
BstNI CCWGG 1 cut(s) 992
BstNSI RCATGY 4 cut(s) 166, 501, 866, 976
BstSCI CCNGG 2 cut(s) 732, 990
BstSFI CTRYAG 1 cut(s) 324
BstUI CGCG 1 cut(s) 377
BstV1I GCAGC 2 cut(s) 670, 905
BstX2I RGATCY 1 cut(s) 987
BstYI RGATCY 1 cut(s) 987
Bsu15I ATCGAT 1 cut(s) 1024
BsuRI GGCC 6 cut(s) 77, 87, 201, 432, 750, 947
BsuTUI ATCGAT 1 cut(s) 1024
BtgI CCRYGG 3 cut(s) 229, 382, 453
BtsI GCAGTG 1 cut(s) 625
BtsIMutI CAGTG 3 cut(s) 610, 625, 840
Cac8I GCNNGC 6 cut(s) 85, 128, 430, 553, 665, 828
CfoI GCGC 1 cut(s) 802
Cfr10I RCCGGY 2 cut(s) 83, 746
Cfr13I GGNCC 1 cut(s) 749
ClaI ATCGAT 1 cut(s) 1024
CseI GACGC 1 cut(s) 517
Csp6I GTAC 2 cut(s) 811, 1073
CviAII CATG 7 cut(s) 163, 383, 454, 498, 687, 863, 973
CviQI GTAC 2 cut(s) 811, 1073
DdeI CTNAG 3 cut(s) 196, 459, 668
DpnI GATC 3 cut(s) 315, 921, 989
DpnII GATC 3 cut(s) 313, 919, 987
DrdI GACNNNNNNGTC 1 cut(s) 973
DseDI GACNNNNNNGTC 1 cut(s) 973
Eam1104I CTCTTC 3 cut(s) 24, 936, 1063
EarI CTCTTC 3 cut(s) 24, 936, 1063
EciI GGCGGA 2 cut(s) 70, 233
Eco130I CCWWGG 2 cut(s) 382, 453
Eco147I AGGCCT 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 990
EcoT14I CCWWGG 2 cut(s) 382, 453
EcoT22I ATGCAT 1 cut(s) 658
ErhI CCWWGG 2 cut(s) 382, 453
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 7 cut(s) 166, 386, 457, 501, 690, 866, 976
FatI CATG 7 cut(s) 162, 382, 453, 497, 686, 862, 972
FauI CCCGC 1 cut(s) 433
Fnu4HI GCNGC 5 cut(s) 184, 301, 684, 894, 1003
Fsp4HI GCNGC 5 cut(s) 184, 301, 684, 894, 1003
FspBI CTAG 3 cut(s) 180, 765, 827
GlaI GCGC 1 cut(s) 801
GluI GCNGC 5 cut(s) 184, 301, 684, 894, 1003
GsuI CTGGAG 1 cut(s) 634
HaeIII GGCC 6 cut(s) 77, 87, 201, 432, 750, 947
HapII CCGG 3 cut(s) 84, 734, 747
HgaI GACGC 1 cut(s) 517
HhaI GCGC 1 cut(s) 802
Hin1I GRCGYC 1 cut(s) 509
Hin1II CATG 7 cut(s) 166, 386, 457, 501, 690, 866, 976
Hin6I GCGC 1 cut(s) 800
HinP1I GCGC 1 cut(s) 800
HincII GTYRAC 4 cut(s) 214, 256, 421, 720
HindII GTYRAC 4 cut(s) 214, 256, 421, 720
HindIII AAGCTT 2 cut(s) 364, 1046
HinfI GANTC 5 cut(s) 137, 623, 924, 1021, 1026
HpaII CCGG 3 cut(s) 84, 734, 747
HphI GGTGA 2 cut(s) 49, 158
Hpy166II GTNNAC 5 cut(s) 40, 214, 256, 421, 720
Hpy188III TCNNGA 1 cut(s) 1018
Hpy8I GTNNAC 5 cut(s) 40, 214, 256, 421, 720
Hpy99I CGWCG 2 cut(s) 356, 970
HpyAV CCTTC 3 cut(s) 202, 466, 487
HpyCH4III ACNGT 3 cut(s) 218, 230, 835
HpyCH4IV ACGT 2 cut(s) 354, 1011
HpyF10VI GCNNNNNNNGC 8 cut(s) 74, 93, 309, 332, 393, 680, 785, 1002
HpyF3I CTNAG 3 cut(s) 196, 459, 668
HpySE526I ACGT 2 cut(s) 354, 1011
Hsp92I GRCGYC 1 cut(s) 509
Hsp92II CATG 7 cut(s) 166, 386, 457, 501, 690, 866, 976
HspAI GCGC 1 cut(s) 800
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Kzo9I GATC 3 cut(s) 313, 919, 987
LmnI GCTCC 2 cut(s) 575, 615
Lsp1109I GCAGC 2 cut(s) 670, 905
LweI GCATC 1 cut(s) 259
MaeI CTAG 3 cut(s) 180, 765, 827
MaeII ACGT 2 cut(s) 354, 1011
MaeIII GTNAC 4 cut(s) 175, 369, 440, 624
MalI GATC 3 cut(s) 315, 921, 989
MboI GATC 3 cut(s) 313, 919, 987
MboII GAAGA 7 cut(s) 41, 278, 531, 950, 953, 991, 1080
MflI RGATCY 1 cut(s) 987
MluCI AATT 3 cut(s) 577, 756, 1031
MluI ACGCGT 1 cut(s) 375
MlyI GAGTC 3 cut(s) 131, 632, 933
MmeI TCCRAC 1 cut(s) 797
Mph1103I ATGCAT 1 cut(s) 658
MroNI GCCGGC 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 1025
MseI TTAA 1 cut(s) 600
MslI CAYNNNNRTG 2 cut(s) 47, 167
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 3 cut(s) 84, 734, 747
MspR9I CCNGG 2 cut(s) 734, 992
MvaI CCWGG 1 cut(s) 992
MvnI CGCG 1 cut(s) 377
MwoI GCNNNNNNNGC 8 cut(s) 74, 93, 309, 332, 393, 680, 785, 1002
NaeI GCCGGC 1 cut(s) 85
NciI CCSGG 1 cut(s) 734
NcoI CCATGG 2 cut(s) 382, 453
NdeII GATC 3 cut(s) 313, 919, 987
NgoMIV GCCGGC 1 cut(s) 83
NheI GCTAGC 1 cut(s) 826
NlaIII CATG 7 cut(s) 166, 386, 457, 501, 690, 866, 976
NlaIV GGNNCC 1 cut(s) 304
NmeAIII GCCGAG 2 cut(s) 724, 973
NmuCI GTSAC 3 cut(s) 175, 369, 624
NsiI ATGCAT 1 cut(s) 658
NspI RCATGY 4 cut(s) 166, 501, 866, 976
NspV TTCGAA 1 cut(s) 1029
PaeR7I CTCGAG 1 cut(s) 139
PceI AGGCCT 1 cut(s) 201
PciI ACATGT 2 cut(s) 162, 862
PcsI WCGNNNNNNNCGW 1 cut(s) 974
PdiI GCCGGC 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 1025
PfeI GAWTC 2 cut(s) 1021, 1026
PkrI GCNGC 5 cut(s) 185, 302, 685, 895, 1004
Ple19I CGATCG 2 cut(s) 316, 922
PleI GAGTC 3 cut(s) 131, 631, 932
PpsI GAGTC 3 cut(s) 131, 631, 932
PscI ACATGT 2 cut(s) 162, 862
Psp1406I AACGTT 1 cut(s) 1011
Psp6I CCWGG 1 cut(s) 990
PspGI CCWGG 1 cut(s) 990
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 1 cut(s) 749
PspXI VCTCGAGB 1 cut(s) 139
PstI CTGCAG 1 cut(s) 328
PsuI RGATCY 1 cut(s) 987
PvuI CGATCG 2 cut(s) 316, 922
RgaI GCGATCGC 1 cut(s) 316
RsaI GTAC 2 cut(s) 812, 1074
RsaNI GTAC 2 cut(s) 811, 1073
RseI CAYNNNNRTG 2 cut(s) 47, 167
SaqAI TTAA 1 cut(s) 600
SatI GCNGC 5 cut(s) 184, 301, 684, 894, 1003
Sau3AI GATC 3 cut(s) 313, 919, 987
Sau96I GGNCC 1 cut(s) 749
SchI GAGTC 3 cut(s) 131, 632, 933
ScrFI CCNGG 2 cut(s) 734, 992
SfaAI GCGATCGC 1 cut(s) 316
SfaNI GCATC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 324
Sfr274I CTCGAG 1 cut(s) 139
SfuI TTCGAA 1 cut(s) 1029
SgfI GCGATCGC 1 cut(s) 316
SlaI CTCGAG 1 cut(s) 139
SmiMI CAYNNNNRTG 2 cut(s) 47, 167
SmlI CTYRAG 2 cut(s) 139, 794
SmoI CTYRAG 2 cut(s) 139, 794
Sse9I AATT 3 cut(s) 577, 756, 1031
SseBI AGGCCT 1 cut(s) 201
SsiI CCGC 8 cut(s) 81, 94, 183, 244, 300, 426, 777, 1002
SspMI CTAG 3 cut(s) 180, 765, 827
StuI AGGCCT 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 732, 990
StyI CCWWGG 2 cut(s) 382, 453
TaaI ACNGT 3 cut(s) 218, 230, 835
TaiI ACGT 2 cut(s) 357, 1014
TasI AATT 3 cut(s) 577, 756, 1031
TatI WGTACW 1 cut(s) 1072
TauI GCSGC 3 cut(s) 186, 303, 1005
TfiI GAWTC 2 cut(s) 1021, 1026
Tru1I TTAA 1 cut(s) 600
Tru9I TTAA 1 cut(s) 600
TscAI CASTG 3 cut(s) 617, 625, 840
TseFI GTSAC 3 cut(s) 175, 369, 624
TseI GCWGC 2 cut(s) 683, 893
Tsp45I GTSAC 3 cut(s) 175, 369, 624
TspDTI ATGAA 4 cut(s) 168, 506, 899, 1080
TspGWI ACGGA 2 cut(s) 229, 948
TspRI CASTG 3 cut(s) 617, 625, 840
XapI RAATTY 2 cut(s) 577, 756
XceI RCATGY 4 cut(s) 166, 501, 866, 976
XcmI CCANNNNNNNNNTGG 1 cut(s) 389
XhoI CTCGAG 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 1025
XspI CTAG 3 cut(s) 180, 765, 827
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.