Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0011349

Physical Location & Seq

Genomic Coordinates Reverse (-)

1491101 .. 1494566

Gene Structure 3466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02510.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGGATTGTGGGTTTGGAAGAGAGGGTGAACATCGAGGTGCAGGAGTTCTGCCGTACGTTGGTGGCCTCCGCCAGCCTCCACCGCAGAAAAGACGACCACCAGCAACCCGACCACAAGCGTTTCGACTCGAGGGGTGATTATGAACAAGATATGTTGGTGTGTGTCACTAGCGGCGTTTCCTTCTTAGGCCTTGCCGTCGTCGACCGTCTCCTCCACCGTGGCTACTCCGTCCGCCTCATCGTTGACAACCAAGCCGGAATTAATGTGTTGTCGTGTCCCCCCGAAACACATATTCCAGAAGATGTAGAAATATTGAGGGAGATGAGGACAAGCGGCGCCACCAGCGATCGCATATCTGCATTTATTGCGAAGCTAACCGACACCGACGTTGTTGAAAGTTTGTCACACGCGTTCCATGGCTGTCGTGGCGTTTTCCACACTTCTGCATTTGTCGACCCCGCTGGCCTCTCTGGTTACACTAAATCCATGGCTGAGATAGAAGTGAAGGCAAGTGAGAATGTGATGAAGGCATGTGCAATGACGCCATCTGTGAGAAAATGTGTGCTGACTTCTTCCCTTTTAGCCTGCGTTTGGCAAGACAGCTCCCAGAATTTGAACTTCTCCCCTGTAATTAACCATAACCACTGGAGCAGTGAGTCACTCTGCATAGATAAAAAGGTACTGTTTACAGTTATTTTACTGAAATTACTAAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009964 GO:0009987 GO:0016491 GO:0016627 GO:0016628 GO:0019222 GO:0019438 GO:0019748 GO:0033729 GO:0042742 GO:0043207 GO:0044237 GO:0044249 GO:0044550 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0071704 GO:0080090 GO:0098542 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

3Beta_HSD Epimerase

Protein Analysis

241

Amino Acids

26.68

Weight (kDa)

6.19

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14700 AT5G14700
fragaria_vesca	FvH4_6g50850
malus_domestica	MD09G1031700.v1.1 MD17G1033400.v1.1
prunus_persica	Prupe.3G286200_v2.0.a1
pyrus_communis	pycom111g02510 pycom17g03060
rosa_chinensis	RchiOBHm_Chr2g0172231
rosa_laevigata	RLG00000022098
rosa_multiflora	Rmu_co8477553.1_g000001 Rmu_sc0024549.1_g000006 Rmu_sc0025855.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080040
rosa_rugosa	Rorug02G0558000
rosa_samantha	Rh2AG633100 Rh2BG646700 Rh2CG613600 Rh2DG661500
rosa_wichuraiana	Rw2G052410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AccI	GTMKAC	2 cut(s)	204, 456
AccII	CGCG	1 cut(s)	413
AciI	CCGC	6 cut(s)	72, 85, 174, 235, 336, 462
AcsI	RAATTY	1 cut(s)	613
AcyI	GRCGYC	2 cut(s)	339, 545
AfaI	GTAC	2 cut(s)	58, 684
AfiI	CCNNNNNNNGG	2 cut(s)	61, 594
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	2 cut(s)	398, 619
AluBI	AGCT	2 cut(s)	376, 606
AluI	AGCT	2 cut(s)	376, 606
Alw26I	GTCTC	1 cut(s)	215
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	3 cut(s)	66, 190, 466
ApoI	RAATTY	1 cut(s)	613
AseI	ATTAAT	1 cut(s)	264
AsiSI	GCGATCGC	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	40, 149
AvaI	CYCGRG	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	338
BccI	CCATC	1 cut(s)	556
BceAI	ACGGC	2 cut(s)	39, 182
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	342
BisI	GCNGC	2 cut(s)	175, 337
BlsI	GCNGC	2 cut(s)	176, 338
BmeT110I	CYCGRG	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	340
BpmI	CTGGAG	1 cut(s)	670
BsaHI	GRCGYC	2 cut(s)	339, 545
BsaJI	CCNNGG	3 cut(s)	220, 418, 489
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 594
Bse1I	ACTGG	1 cut(s)	653
Bse3DI	GCAATG	1 cut(s)	546
BseDI	CCNNGG	3 cut(s)	220, 418, 489
BseLI	CCNNNNNNNGG	2 cut(s)	61, 594
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	653
BseRI	GAGGAG	1 cut(s)	203
BsgI	GTGCAG	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	413
Bsh1285I	CGRYCG	2 cut(s)	208, 352
BshFI	GGCC	3 cut(s)	68, 192, 468
BshNI	GGYRCC	1 cut(s)	338
BsiEI	CGRYCG	2 cut(s)	208, 352
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	258
BsiWI	CGTACG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	61, 594
BsmAI	GTCTC	1 cut(s)	215
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	3 cut(s)	68, 192, 468
BsoBI	CYCGRG	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	349
Bsp19I	CCATGG	2 cut(s)	418, 489
BspACI	CCGC	6 cut(s)	72, 85, 174, 235, 336, 462
BspANI	GGCC	3 cut(s)	68, 192, 468
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	413
BspLI	GGNNCC	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	653
BssECI	CCNNGG	3 cut(s)	220, 418, 489
BssMI	GATC	1 cut(s)	349
BssNI	GRCGYC	2 cut(s)	339, 545
BssT1I	CCWWGG	2 cut(s)	418, 489
Bst4CI	ACNGT	4 cut(s)	209, 221, 687, 694
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	2 cut(s)	339, 545
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	76, 466, 589
BstDEI	CTNAG	3 cut(s)	187, 495, 713
BstDSI	CCRYGG	3 cut(s)	220, 418, 489
BstFNI	CGCG	1 cut(s)	413
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	349
BstMCI	CGRYCG	2 cut(s)	208, 352
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 345, 368, 429
BstNSI	RCATGY	1 cut(s)	537
BstUI	CGCG	1 cut(s)	413
BsuRI	GGCC	3 cut(s)	68, 192, 468
BtgI	CCRYGG	3 cut(s)	220, 418, 489
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	2 cut(s)	646, 661
Cac8I	GCNNGC	3 cut(s)	76, 466, 589
CfoI	GCGC	1 cut(s)	341
CseI	GACGC	1 cut(s)	553
Csp6I	GTAC	2 cut(s)	57, 683
CviAII	CATG	3 cut(s)	419, 490, 534
CviQI	GTAC	2 cut(s)	57, 683
DdeI	CTNAG	3 cut(s)	187, 495, 713
DinI	GGCGCC	1 cut(s)	340
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
EciI	GGCGGA	2 cut(s)	61, 224
Eco130I	CCWWGG	2 cut(s)	418, 489
Eco147I	AGGCCT	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	418, 489
EgeI	GGCGCC	1 cut(s)	340
EheI	GGCGCC	1 cut(s)	340
ErhI	CCWWGG	2 cut(s)	418, 489
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	3 cut(s)	422, 493, 537
FaiI	YATR	9 cut(s)	144, 155, 294, 356, 420, 491, 535, 642, 671
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	3 cut(s)	418, 489, 533
FauI	CCCGC	1 cut(s)	469
FblI	GTMKAC	2 cut(s)	204, 456
Fnu4HI	GCNGC	2 cut(s)	175, 337
Fsp4HI	GCNGC	2 cut(s)	175, 337
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	2 cut(s)	175, 337
GsuI	CTGGAG	1 cut(s)	670
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	3 cut(s)	68, 192, 468
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	1 cut(s)	553
HhaI	GCGC	1 cut(s)	341
Hin1I	GRCGYC	2 cut(s)	339, 545
Hin1II	CATG	3 cut(s)	422, 493, 537
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	3 cut(s)	205, 247, 457
HindII	GTYRAC	3 cut(s)	205, 247, 457
HinfI	GANTC	2 cut(s)	128, 659
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	2 cut(s)	40, 149
Hpy166II	GTNNAC	5 cut(s)	31, 205, 247, 457, 690
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	5 cut(s)	31, 205, 247, 457, 690
Hpy99I	CGWCG	3 cut(s)	203, 206, 392
HpyAV	CCTTC	3 cut(s)	193, 502, 523
HpyCH4III	ACNGT	4 cut(s)	209, 221, 687, 694
HpyCH4IV	ACGT	2 cut(s)	59, 390
HpyCH4V	TGCA	5 cut(s)	43, 362, 449, 539, 669
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 345, 368, 429
HpyF3I	CTNAG	3 cut(s)	187, 495, 713
HpySE526I	ACGT	2 cut(s)	59, 390
Hsp92I	GRCGYC	2 cut(s)	339, 545
Hsp92II	CATG	3 cut(s)	422, 493, 537
HspAI	GCGC	1 cut(s)	339
KasI	GGCGCC	1 cut(s)	338
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	2 cut(s)	611, 651
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	2 cut(s)	59, 390
MaeIII	GTNAC	4 cut(s)	166, 405, 476, 660
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	3 cut(s)	32, 314, 567
MluCI	AATT	4 cut(s)	261, 613, 633, 707
MluI	ACGCGT	1 cut(s)	411
Mly113I	GGCGCC	1 cut(s)	339
MlyI	GAGTC	2 cut(s)	122, 668
MseI	TTAA	3 cut(s)	264, 636, 721
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	1 cut(s)	258
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	4 cut(s)	84, 345, 368, 429
NarI	GGCGCC	1 cut(s)	339
NcoI	CCATGG	2 cut(s)	418, 489
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	3 cut(s)	422, 493, 537
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	3 cut(s)	166, 405, 660
NspI	RCATGY	1 cut(s)	537
PaeR7I	CTCGAG	1 cut(s)	130
PceI	AGGCCT	1 cut(s)	192
Pfl23II	CGTACG	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	176, 338
Ple19I	CGATCG	1 cut(s)	352
PleI	GAGTC	2 cut(s)	122, 667
PluTI	GGCGCC	1 cut(s)	342
PpsI	GAGTC	2 cut(s)	122, 667
PshBI	ATTAAT	1 cut(s)	264
PspLI	CGTACG	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	340
PspXI	VCTCGAGB	1 cut(s)	130
PvuI	CGATCG	1 cut(s)	352
RgaI	GCGATCGC	1 cut(s)	352
RsaI	GTAC	2 cut(s)	58, 684
RsaNI	GTAC	2 cut(s)	57, 683
RseI	CAYNNNNRTG	1 cut(s)	38
SalI	GTCGAC	2 cut(s)	203, 455
SaqAI	TTAA	3 cut(s)	264, 636, 721
SatI	GCNGC	2 cut(s)	175, 337
Sau3AI	GATC	1 cut(s)	349
SchI	GAGTC	2 cut(s)	122, 668
SetI	ASST	7 cut(s)	42, 62, 378, 393, 608, 684, 719
SfaAI	GCGATCGC	1 cut(s)	352
SfoI	GGCGCC	1 cut(s)	340
Sfr274I	CTCGAG	1 cut(s)	130
SgfI	GCGATCGC	1 cut(s)	352
SlaI	CTCGAG	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	4 cut(s)	261, 613, 633, 707
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	6 cut(s)	72, 85, 174, 235, 336, 462
SspDI	GGCGCC	1 cut(s)	338
SspI	AATATT	1 cut(s)	315
SspMI	CTAG	1 cut(s)	171
StuI	AGGCCT	1 cut(s)	192
StyI	CCWWGG	2 cut(s)	418, 489
TaaI	ACNGT	4 cut(s)	209, 221, 687, 694
TaiI	ACGT	2 cut(s)	62, 393
TaqI	TCGA	5 cut(s)	36, 126, 131, 204, 456
TasI	AATT	4 cut(s)	261, 613, 633, 707
TauI	GCSGC	2 cut(s)	177, 339
Tru1I	TTAA	3 cut(s)	264, 636, 721
Tru9I	TTAA	3 cut(s)	264, 636, 721
TscAI	CASTG	2 cut(s)	653, 661
TseFI	GTSAC	3 cut(s)	166, 405, 660
Tsp45I	GTSAC	3 cut(s)	166, 405, 660
TspDTI	ATGAA	2 cut(s)	159, 542
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	2 cut(s)	653, 661
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	1 cut(s)	613
XceI	RCATGY	1 cut(s)	537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XhoI	CTCGAG	1 cut(s)	130
XmiI	GTMKAC	2 cut(s)	204, 456
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.