Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011349

Physical Location & Seq

Genomic Coordinates Reverse (-)

2012834 .. 2016261

Gene Structure 3428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g03060.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGGATTGTGGGTTTGGAAGAGAGGGAGAACATCGAATTGCAGGAGTTCTGCCGTATGCTGATGGCTTCCGCCGGCCTCCACCGCAGAAAAGACGGCCGGCAGCAGCCCAACAACAAGCGTTTCGACTTGAGGGGTGACGATGAAGAAGACATGTTGGTGTGTGTCACTAGCGGCGTTTCTTTCTTAGGACTTGCCCTCGTCGATCGTCTCCTCCGCCGTGGCTACTCCGTCCGCCTCGTCGTTGACAACCAAGAGGATGTAGAAAAATTGAGGGAGATGAGGACAGGCGGCAGCACCGATGACCGCATTTCTGCAGTTATGGCGAAGCTAACCGACGACGACGATGTTGAAAGCTTGTCCCATGCATTCGATGGCTGTCGTGGCGTTTTCCACACCTCTGCATTTGTCGACCCCGCTGGCCTCTCTGGCTACACTAAATCCATGGCTGAGATAGAAGTGAAGGCGAGTGAGAACGTGATGAAGGCATGTGCAGTGACACCATCTGTGAGAAAATGTGTCCTCACTTCTTCACTTCTAGCCTGCGTATGGCAAGACAGCACCCGCAACGACCTCTCCCCTGTAATTAACCATGATTCCTGGAGCACTGAGTCACTCTGCATTGACAAAAAGCTTTGGTATGCCTTGGGGAAGCTGAGGGCAGAGAAAGCTGCATGGAAAATAGCTGAGGAAAAAGGGGTGAAGTTGGCCACCATCTGCCCAGCTCTTATCACTGGCCCTGAAATTTCCACTAGAAATCCAACAGCAACACTTGCATATCTCAAAGGAGCACAACAAATGTACCAAAGTGGTGTGCTAGCCACAGTCGATATAACAAGACTGGCAGAGGCACATGTAGGCGTGTTTGAGGCAATGAACAAGGCAGCGTTTGGGAGATACATTTGCTTCGATCGAGTCGTTGACGGAGAAGAAGAGGCCGAGAAGTTAGCAGAGGCGACGAGCATGTTGAAGAACAAGTTCGTGGGCAATGGGGGCTCTAATATTGTCCAGAATCGATTCGAATTGTCGAACAGAAAGCTTACAAATCTTTTGTCCGGAAGAGTACATTGCTGCTATAGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009964 GO:0009987 GO:0016491 GO:0016627 GO:0016628 GO:0019222 GO:0019438 GO:0019748 GO:0033729 GO:0042742 GO:0043207 GO:0044237 GO:0044249 GO:0044550 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0071704 GO:0080090 GO:0098542 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

3Beta_HSD Epimerase

Protein Analysis

362

Amino Acids

39.83

Weight (kDa)

5.97

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14700 AT5G14700
fragaria_vesca	FvH4_6g50850
malus_domestica	MD09G1031700.v1.1 MD17G1033400.v1.1
prunus_persica	Prupe.3G286200_v2.0.a1
pyrus_communis	pycom111g02510 pycom17g03060
rosa_chinensis	RchiOBHm_Chr2g0172231
rosa_laevigata	RLG00000022098
rosa_multiflora	Rmu_co8477553.1_g000001 Rmu_sc0024549.1_g000006 Rmu_sc0025855.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080040
rosa_rugosa	Rorug02G0558000
rosa_samantha	Rh2AG633100 Rh2BG646700 Rh2CG613600 Rh2DG661500
rosa_wichuraiana	Rw2G052410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	411
AccIII	TCCGGA	1 cut(s)	1055
AciI	CCGC	9 cut(s)	72, 85, 174, 217, 235, 291, 307, 417, 565
AcoI	YGGCCR	2 cut(s)	97, 708
AcsI	RAATTY	1 cut(s)	744
AfaI	GTAC	2 cut(s)	803, 1065
AfiI	CCNNNNNNNGG	1 cut(s)	549
AflIII	ACRYGT	2 cut(s)	153, 853
AgsI	TTSAA	2 cut(s)	353, 970
AjnI	CCWGG	1 cut(s)	599
AluBI	AGCT	8 cut(s)	331, 357, 634, 655, 671, 686, 725, 1039
AluI	AGCT	8 cut(s)	331, 357, 634, 655, 671, 686, 725, 1039
Alw21I	GWGCWC	2 cut(s)	608, 793
Alw26I	GTCTC	1 cut(s)	215
Aor13HI	TCCGGA	1 cut(s)	1055
AoxI	GGCC	6 cut(s)	76, 97, 421, 708, 736, 936
ApeKI	GCWGC	6 cut(s)	103, 106, 294, 671, 884, 1071
ApoI	RAATTY	1 cut(s)	744
ArsI	GACNNNNNNTTYG	2 cut(s)	1037, 1069
Asp700I	GAANNNNTTC	2 cut(s)	977, 1016
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	2 cut(s)	149, 712
AsuII	TTCGAA	1 cut(s)	1020
AsuNHI	GCTAGC	1 cut(s)	817
BaeI	ACNNNNGTAYC	2 cut(s)	785, 818
BalI	TGGCCA	1 cut(s)	710
BanII	GRGCYC	1 cut(s)	998
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	2 cut(s)	608, 793
BbvCI	CCTCAGC	2 cut(s)	656, 687
BbvI	GCAGC	6 cut(s)	115, 118, 306, 658, 896, 1058
BccI	CCATC	4 cut(s)	58, 368, 511, 722
BceAI	ACGGC	3 cut(s)	39, 112, 204
BciT130I	CCWGG	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	4 cut(s)	171, 539, 753, 818
BfmI	CTRYAG	2 cut(s)	315, 1075
BglI	GCCNNNNNGGC	1 cut(s)	429
BisI	GCNGC	8 cut(s)	104, 107, 175, 292, 295, 672, 885, 1072
BlsI	GCNGC	8 cut(s)	105, 108, 176, 293, 296, 673, 886, 1073
Bme1390I	CCNGG	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	737
BmrFI	CCNGG	1 cut(s)	601
BmtI	GCTAGC	1 cut(s)	821
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	622
Bpu10I	CCTNAGC	2 cut(s)	656, 687
Bpu14I	TTCGAA	1 cut(s)	1020
BpuEI	CTTGAG	1 cut(s)	151
Bsa29I	ATCGAT	1 cut(s)	1015
BsaJI	CCNNGG	3 cut(s)	220, 444, 645
BsaWI	WCCGGW	1 cut(s)	1055
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse118I	RCCGGY	2 cut(s)	74, 99
Bse1I	ACTGG	2 cut(s)	739, 846
Bse3DI	GCAATG	3 cut(s)	879, 994, 1066
BseAI	TCCGGA	1 cut(s)	1055
BseBI	CCWGG	1 cut(s)	601
BseCI	ATCGAT	1 cut(s)	1015
BseDI	CCNNGG	3 cut(s)	220, 444, 645
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMI	GCAATG	3 cut(s)	879, 994, 1066
BseMII	CTCAG	4 cut(s)	441, 600, 647, 678
BseNI	ACTGG	2 cut(s)	739, 846
BseRI	GAGGAG	1 cut(s)	203
BseX3I	CGGCCG	1 cut(s)	97
BseXI	GCAGC	6 cut(s)	115, 118, 306, 658, 896, 1058
BseYI	CCCAGC	1 cut(s)	721
BsgI	GTGCAG	1 cut(s)	513
Bsh1285I	CGRYCG	3 cut(s)	100, 208, 913
BshFI	GGCC	6 cut(s)	78, 99, 423, 710, 738, 938
BshVI	ATCGAT	1 cut(s)	1015
BsiEI	CGRYCG	3 cut(s)	100, 208, 913
BsiHKAI	GWGCWC	2 cut(s)	608, 793
BsiSI	CCGG	3 cut(s)	75, 100, 1056
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	1 cut(s)	215
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	368
BsnI	GGCC	6 cut(s)	78, 99, 423, 710, 738, 938
Bsp119I	TTCGAA	1 cut(s)	1020
Bsp1286I	GDGCHC	3 cut(s)	608, 793, 998
Bsp13I	TCCGGA	1 cut(s)	1055
Bsp143I	GATC	2 cut(s)	205, 910
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	9 cut(s)	72, 85, 174, 217, 235, 291, 307, 417, 565
BspANI	GGCC	6 cut(s)	78, 99, 423, 710, 738, 938
BspCNI	CTCAG	4 cut(s)	442, 601, 648, 679
BspDI	ATCGAT	1 cut(s)	1015
BspEI	TCCGGA	1 cut(s)	1055
BspMAI	CTGCAG	1 cut(s)	319
BspOI	GCTAGC	1 cut(s)	821
BspT104I	TTCGAA	1 cut(s)	1020
BsrDI	GCAATG	3 cut(s)	879, 994, 1066
BsrFI	RCCGGY	2 cut(s)	74, 99
BsrI	ACTGG	2 cut(s)	739, 846
BssAI	RCCGGY	2 cut(s)	74, 99
BssECI	CCNNGG	3 cut(s)	220, 444, 645
BssMI	GATC	2 cut(s)	205, 910
BssT1I	CCWWGG	2 cut(s)	444, 645
Bst2UI	CCWGG	1 cut(s)	601
Bst4CI	ACNGT	1 cut(s)	826
Bst6I	CTCTTC	3 cut(s)	15, 927, 1054
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstBI	TTCGAA	1 cut(s)	1020
BstC8I	GCNNGC	5 cut(s)	76, 101, 421, 544, 819
BstDEI	CTNAG	5 cut(s)	187, 450, 609, 656, 687
BstDSI	CCRYGG	2 cut(s)	220, 444
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	2 cut(s)	208, 913
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	2 cut(s)	205, 910
BstMCI	CGRYCG	3 cut(s)	100, 208, 913
BstMWI	GCNNNNNNNGC	7 cut(s)	84, 323, 384, 429, 668, 773, 993
BstNI	CCWGG	1 cut(s)	601
BstNSI	RCATGY	4 cut(s)	157, 492, 857, 967
BstSCI	CCNGG	1 cut(s)	599
BstSFI	CTRYAG	2 cut(s)	315, 1075
BstV1I	GCAGC	6 cut(s)	115, 118, 306, 658, 896, 1058
BstV2I	GAAGAC	1 cut(s)	156
BstZI	CGGCCG	1 cut(s)	97
Bsu15I	ATCGAT	1 cut(s)	1015
BsuRI	GGCC	6 cut(s)	78, 99, 423, 710, 738, 938
BsuTUI	ATCGAT	1 cut(s)	1015
BtgI	CCRYGG	2 cut(s)	220, 444
BtsCI	GGATG	1 cut(s)	265
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	3 cut(s)	501, 606, 732
Cac8I	GCNNGC	5 cut(s)	76, 101, 421, 544, 819
Cfr10I	RCCGGY	2 cut(s)	74, 99
Cfr13I	GGNCC	1 cut(s)	737
ClaI	ATCGAT	1 cut(s)	1015
Csp6I	GTAC	2 cut(s)	802, 1064
CviAII	CATG	8 cut(s)	154, 365, 445, 489, 593, 675, 854, 964
CviQI	GTAC	2 cut(s)	802, 1064
DdeI	CTNAG	5 cut(s)	187, 450, 609, 656, 687
DpnI	GATC	2 cut(s)	207, 912
DpnII	GATC	2 cut(s)	205, 910
EaeI	YGGCCR	2 cut(s)	97, 708
EagI	CGGCCG	1 cut(s)	97
Eam1104I	CTCTTC	3 cut(s)	15, 927, 1054
EarI	CTCTTC	3 cut(s)	15, 927, 1054
EciI	GGCGGA	3 cut(s)	61, 206, 224
EclXI	CGGCCG	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	444, 645
Eco24I	GRGCYC	1 cut(s)	998
Eco52I	CGGCCG	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	599
EcoT14I	CCWWGG	2 cut(s)	444, 645
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	998
ErhI	CCWWGG	2 cut(s)	444, 645
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	8 cut(s)	157, 368, 448, 492, 596, 678, 857, 967
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	8 cut(s)	153, 364, 444, 488, 592, 674, 853, 963
FauI	CCCGC	2 cut(s)	424, 572
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	8 cut(s)	104, 107, 175, 292, 295, 672, 885, 1072
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	998
Fsp4HI	GCNGC	8 cut(s)	104, 107, 175, 292, 295, 672, 885, 1072
FspBI	CTAG	4 cut(s)	171, 539, 753, 818
GluI	GCNGC	8 cut(s)	104, 107, 175, 292, 295, 672, 885, 1072
GsaI	CCCAGC	1 cut(s)	725
GsuI	CTGGAG	1 cut(s)	622
HaeIII	GGCC	6 cut(s)	78, 99, 423, 710, 738, 938
HapII	CCGG	3 cut(s)	75, 100, 1056
Hin1II	CATG	8 cut(s)	157, 368, 448, 492, 596, 678, 857, 967
HincII	GTYRAC	3 cut(s)	247, 412, 922
HindII	GTYRAC	3 cut(s)	247, 412, 922
HindIII	AAGCTT	3 cut(s)	355, 632, 1037
HinfI	GANTC	5 cut(s)	596, 611, 915, 1012, 1017
HpaII	CCGG	3 cut(s)	75, 100, 1056
HphI	GGTGA	2 cut(s)	149, 712
Hpy166II	GTNNAC	3 cut(s)	247, 412, 922
Hpy188III	TCNNGA	2 cut(s)	1009, 1056
Hpy8I	GTNNAC	3 cut(s)	247, 412, 922
Hpy99I	CGWCG	6 cut(s)	206, 245, 341, 344, 347, 961
HpyAV	CCTTC	2 cut(s)	457, 478
HpyCH4III	ACNGT	1 cut(s)	826
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	8 cut(s)	43, 317, 368, 404, 494, 621, 674, 776
HpyF10VI	GCNNNNNNNGC	7 cut(s)	84, 323, 384, 429, 668, 773, 993
HpyF3I	CTNAG	5 cut(s)	187, 450, 609, 656, 687
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	8 cut(s)	157, 368, 448, 492, 596, 678, 857, 967
Kpn2I	TCCGGA	1 cut(s)	1055
KroI	GCCGGC	2 cut(s)	74, 99
KroNI	GCCGGC	2 cut(s)	76, 101
Kzo9I	GATC	2 cut(s)	205, 910
LmnI	GCTCC	2 cut(s)	603, 788
Lsp1109I	GCAGC	6 cut(s)	115, 118, 306, 658, 896, 1058
MaeI	CTAG	4 cut(s)	171, 539, 753, 818
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	4 cut(s)	137, 166, 496, 612
MalI	GATC	2 cut(s)	207, 912
MboI	GATC	2 cut(s)	205, 910
MboII	GAAGA	8 cut(s)	32, 158, 161, 522, 941, 944, 982, 1071
MhlI	GDGCHC	3 cut(s)	608, 793, 998
MlsI	TGGCCA	1 cut(s)	710
MluCI	AATT	5 cut(s)	38, 269, 585, 744, 1022
MluNI	TGGCCA	1 cut(s)	710
MlyI	GAGTC	2 cut(s)	620, 924
MmeI	TCCRAC	1 cut(s)	785
Mox20I	TGGCCA	1 cut(s)	710
Mph1103I	ATGCAT	1 cut(s)	370
MroI	TCCGGA	1 cut(s)	1055
MroNI	GCCGGC	2 cut(s)	74, 99
MroXI	GAANNNNTTC	2 cut(s)	977, 1016
MscI	TGGCCA	1 cut(s)	710
MseI	TTAA	1 cut(s)	588
MslI	CAYNNNNRTG	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	710
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	3 cut(s)	75, 100, 1056
MspR9I	CCNGG	1 cut(s)	601
Mva1269I	GAATGC	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	601
MwoI	GCNNNNNNNGC	7 cut(s)	84, 323, 384, 429, 668, 773, 993
NaeI	GCCGGC	2 cut(s)	76, 101
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	2 cut(s)	205, 910
NgoMIV	GCCGGC	2 cut(s)	74, 99
NheI	GCTAGC	1 cut(s)	817
NlaIII	CATG	8 cut(s)	157, 368, 448, 492, 596, 678, 857, 967
NmeAIII	GCCGAG	1 cut(s)	964
NmuCI	GTSAC	4 cut(s)	137, 166, 496, 612
NsiI	ATGCAT	1 cut(s)	370
NspI	RCATGY	4 cut(s)	157, 492, 857, 967
NspV	TTCGAA	1 cut(s)	1020
PciI	ACATGT	2 cut(s)	153, 853
PcsI	WCGNNNNNNNCGW	1 cut(s)	915
PctI	GAATGC	1 cut(s)	368
PdiI	GCCGGC	2 cut(s)	76, 101
PdmI	GAANNNNTTC	2 cut(s)	977, 1016
PfeI	GAWTC	3 cut(s)	596, 1012, 1017
PfoI	TCCNGGA	1 cut(s)	599
PkrI	GCNGC	8 cut(s)	105, 108, 176, 293, 296, 673, 886, 1073
Ple19I	CGATCG	2 cut(s)	208, 913
PleI	GAGTC	2 cut(s)	619, 923
PpsI	GAGTC	2 cut(s)	619, 923
PscI	ACATGT	2 cut(s)	153, 853
Psp6I	CCWGG	1 cut(s)	599
PspFI	CCCAGC	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	599
PspPI	GGNCC	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	319
PvuI	CGATCG	2 cut(s)	208, 913
RsaI	GTAC	2 cut(s)	803, 1065
RsaNI	GTAC	2 cut(s)	802, 1064
RseI	CAYNNNNRTG	1 cut(s)	158
SalI	GTCGAC	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	8 cut(s)	104, 107, 175, 292, 295, 672, 885, 1072
Sau3AI	GATC	2 cut(s)	205, 910
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	2 cut(s)	620, 924
ScrFI	CCNGG	1 cut(s)	601
SduI	GDGCHC	3 cut(s)	608, 793, 998
SfcI	CTRYAG	2 cut(s)	315, 1075
SfuI	TTCGAA	1 cut(s)	1020
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	5 cut(s)	38, 269, 585, 744, 1022
SsiI	CCGC	9 cut(s)	72, 85, 174, 217, 235, 291, 307, 417, 565
SspI	AATATT	1 cut(s)	1003
SspMI	CTAG	4 cut(s)	171, 539, 753, 818
StyD4I	CCNGG	1 cut(s)	599
StyI	CCWWGG	2 cut(s)	444, 645
TaaI	ACNGT	1 cut(s)	826
TaiI	ACGT	1 cut(s)	480
TasI	AATT	5 cut(s)	38, 269, 585, 744, 1022
TatI	WGTACW	1 cut(s)	1063
TauI	GCSGC	2 cut(s)	177, 294
TfiI	GAWTC	3 cut(s)	596, 1012, 1017
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	3 cut(s)	501, 613, 739
TseFI	GTSAC	4 cut(s)	137, 166, 496, 612
TseI	GCWGC	6 cut(s)	103, 106, 294, 671, 884, 1071
Tsp45I	GTSAC	4 cut(s)	137, 166, 496, 612
TspDTI	ATGAA	4 cut(s)	159, 497, 890, 1071
TspGWI	ACGGA	2 cut(s)	220, 939
TspRI	CASTG	3 cut(s)	501, 613, 739
XapI	RAATTY	1 cut(s)	744
XceI	RCATGY	4 cut(s)	157, 492, 857, 967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	2 cut(s)	977, 1016
XspI	CTAG	4 cut(s)	171, 539, 753, 818
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.