Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8477553.1

Orthogroup ID

OG0011349

Physical Location & Seq

Genomic Coordinates Forward (+)

330 .. 2151

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8477553.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 995 bp

atggggattgctcgtttacaagagagggaagaagatcacgagctattacaagagctccgccgcatgttggtctcctccgctggccaagacaaaccacaccttccacaaaagtgcttctcatccaaaagcgcttatgaagatgactcggcagagaagctagtctgcgtcacaagcggcgtttccttcttgggcctcgccgtcgtcaaccgcctcctcctccgcggctactccgtccgcatcatcgttaataactccttggacgttgagaaactgagggagatgacgacggcgaacgttaacgtcactgtagttatggcgaagctagcagaagttgaaagcttatcacaagcatttcagggctgtcgtggcgtcttccacacctctggatttaccgatcctgctggcctttctgggtacactaaatccatggctgatatcgaagtgaaggccagtgcgaatgtgatgagggcatgtgcagtgacaccttcagtaagaaaatgcgtgctcacttcttcacttttagcctgtgtatggcaagagcaagacatttcacaaaatgacctctccacaatccctgttatcaaccatgactgctggagcaatgagtcactctgcatagaaaaaaagctgtggtatgctttggggaagcttagagcagagaaagctgcatggacattagccaaagaaactgggttaaagctcactacaatctgcccaggtcttattattggccctgaatttttctctagaaaccctacagcaacaattgcatatctcaaaggtgcccaagagatgtaccaatgtggcgtgctagcaaccgtggatgtgatgagactggcagaagttcatgtaagggtatataaggcgatgaacaagtcagcatttggtagatacatttgctttgatcaagtcattgaaacagagaaagaggcagagaagctagcaggggagaccagtatgtcaaagaacaagatatgcggaaatgatgaagggtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009964 GO:0009987 GO:0016491 GO:0016627 GO:0016628 GO:0019222 GO:0019438 GO:0019748 GO:0033729 GO:0042742 GO:0043207 GO:0044237 GO:0044249 GO:0044550 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0071704 GO:0080090 GO:0098542 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

3Beta_HSD Epimerase

Protein Analysis

332

Amino Acids

36.54

Weight (kDa)

6.55

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14700 AT5G14700
fragaria_vesca	FvH4_6g50850
malus_domestica	MD09G1031700.v1.1 MD17G1033400.v1.1
prunus_persica	Prupe.3G286200_v2.0.a1
pyrus_communis	pycom111g02510 pycom17g03060
rosa_chinensis	RchiOBHm_Chr2g0172231
rosa_laevigata	RLG00000022098
rosa_multiflora	Rmu_co8477553.1_g000001 Rmu_sc0024549.1_g000006 Rmu_sc0025855.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080040
rosa_rugosa	Rorug02G0558000
rosa_samantha	Rh2AG633100 Rh2BG646700 Rh2CG613600 Rh2DG661500
rosa_wichuraiana	Rw2G052410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	958
AccB1I	GGYRCC	1 cut(s)	782
AccII	CGCG	1 cut(s)	222
AciI	CCGC	9 cut(s)	58, 61, 78, 174, 208, 220, 222, 235, 978
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	737
AcuI	CTGAAG	1 cut(s)	471
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	2 cut(s)	416, 797
AfeI	AGCGCT	1 cut(s)	130
AfiI	CCNNNNNNNGG	2 cut(s)	67, 531
AgsI	TTSAA	2 cut(s)	335, 917
AjnI	CCWGG	1 cut(s)	715
AleI	CACNNNNGTG	1 cut(s)	109
Alw21I	GWGCWC	2 cut(s)	57, 507
Alw26I	GTCTC	3 cut(s)	76, 826, 944
AlwI	GGATC	1 cut(s)	389
Aor51HI	AGCGCT	1 cut(s)	130
AoxI	GGCC	5 cut(s)	82, 190, 403, 447, 730
ApeKI	GCWGC	1 cut(s)	665
ApoI	RAATTY	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	190, 731
AsuNHI	GCTAGC	3 cut(s)	322, 811, 940
BaeGI	GKGCMC	1 cut(s)	787
BalI	TGGCCA	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	782
BanII	GRGCYC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	364
Bbv12I	GWGCWC	2 cut(s)	57, 507
BbvI	GCAGC	1 cut(s)	652
BceAI	ACGGC	2 cut(s)	182, 303
BciT130I	CCWGG	1 cut(s)	717
BclI	TGATCA	1 cut(s)	904
BcoDI	GTCTC	3 cut(s)	76, 826, 944
BfaI	CTAG	5 cut(s)	158, 323, 747, 812, 941
BfmI	CTRYAG	2 cut(s)	306, 756
BfoI	RGCGCY	1 cut(s)	132
BisI	GCNGC	4 cut(s)	61, 175, 223, 666
BlsI	GCNGC	4 cut(s)	62, 176, 224, 667
Bme1390I	CCNGG	1 cut(s)	717
BmgT120I	GGNCC	2 cut(s)	190, 731
BmiI	GGNNCC	1 cut(s)	784
BmrFI	CCNGG	1 cut(s)	717
BmrI	ACTGGG	1 cut(s)	699
BmsI	GCATC	1 cut(s)	246
BmtI	GCTAGC	3 cut(s)	326, 815, 944
BmuI	ACTGGG	1 cut(s)	699
BpiI	GAAGAC	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	616
BsaHI	GRCGYC	1 cut(s)	369
BsaI	GGTCTC	2 cut(s)	76, 944
BsaJI	CCNNGG	5 cut(s)	220, 255, 426, 715, 819
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 531
Bse1I	ACTGG	4 cut(s)	450, 694, 840, 954
Bse3DI	GCAATG	1 cut(s)	607
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	5 cut(s)	220, 255, 426, 715, 819
BseGI	GGATG	2 cut(s)	119, 829
BseLI	CCNNNNNNNGG	2 cut(s)	67, 531
BseMI	GCAATG	1 cut(s)	607
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	4 cut(s)	450, 694, 840, 954
BseRI	GAGGAG	3 cut(s)	64, 203, 206
BseSI	GKGCMC	1 cut(s)	787
BseXI	GCAGC	1 cut(s)	652
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	5 cut(s)	84, 192, 405, 449, 732
BshNI	GGYRCC	1 cut(s)	782
BsiHKAI	GWGCWC	2 cut(s)	57, 507
BslI	CCNNNNNNNGG	2 cut(s)	67, 531
BsmAI	GTCTC	3 cut(s)	76, 826, 944
BsnI	GGCC	5 cut(s)	84, 192, 405, 449, 732
Bso31I	GGTCTC	2 cut(s)	76, 944
Bsp1286I	GDGCHC	3 cut(s)	57, 507, 787
Bsp143I	GATC	3 cut(s)	34, 394, 904
Bsp19I	CCATGG	1 cut(s)	426
BspACI	CCGC	9 cut(s)	58, 61, 78, 174, 208, 220, 222, 235, 978
BspANI	GGCC	5 cut(s)	84, 192, 405, 449, 732
BspCNI	CTCAG	1 cut(s)	264
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	784
BspOI	GCTAGC	3 cut(s)	326, 815, 944
BspPI	GGATC	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	782
BspTNI	GGTCTC	2 cut(s)	76, 944
BsrDI	GCAATG	1 cut(s)	607
BsrI	ACTGG	4 cut(s)	450, 694, 840, 954
BssECI	CCNNGG	5 cut(s)	220, 255, 426, 715, 819
BssMI	GATC	3 cut(s)	34, 394, 904
BssNI	GRCGYC	1 cut(s)	369
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	2 cut(s)	255, 426
Bst2BI	CACGAG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	2 cut(s)	307, 820
BstACI	GRCGYC	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstC8I	GCNNGC	7 cut(s)	82, 324, 403, 503, 809, 813, 942
BstDEI	CTNAG	2 cut(s)	272, 650
BstDSI	CCRYGG	3 cut(s)	220, 426, 819
BstF5I	GGATG	2 cut(s)	119, 829
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	3 cut(s)	37, 397, 907
BstMAI	GTCTC	3 cut(s)	76, 826, 944
BstMBI	GATC	3 cut(s)	34, 394, 904
BstMWI	GCNNNNNNNGC	5 cut(s)	171, 323, 366, 662, 767
BstNI	CCWGG	1 cut(s)	717
BstNSI	RCATGY	2 cut(s)	67, 474
BstSCI	CCNGG	1 cut(s)	715
BstSFI	CTRYAG	2 cut(s)	306, 756
BstSLI	GKGCMC	1 cut(s)	787
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	652
BstV2I	GAAGAC	1 cut(s)	364
BstXI	CCANNNNNNTGG	1 cut(s)	383
BsuRI	GGCC	5 cut(s)	84, 192, 405, 449, 732
BtgI	CCRYGG	3 cut(s)	220, 426, 819
BtgZI	GCGATG	1 cut(s)	881
BtsCI	GGATG	2 cut(s)	119, 829
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	3 cut(s)	303, 457, 483
Cac8I	GCNNGC	7 cut(s)	82, 324, 403, 503, 809, 813, 942
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	190, 731
Cfr42I	CCGCGG	1 cut(s)	223
CseI	GACGC	2 cut(s)	154, 358
Csp6I	GTAC	2 cut(s)	415, 796
CviAII	CATG	6 cut(s)	64, 427, 471, 587, 669, 848
CviQI	GTAC	2 cut(s)	415, 796
DdeI	CTNAG	2 cut(s)	272, 650
DpnI	GATC	3 cut(s)	36, 396, 906
DpnII	GATC	3 cut(s)	34, 394, 904
DrdI	GACNNNNNNGTC	1 cut(s)	958
DseDI	GACNNNNNNGTC	1 cut(s)	958
EaeI	YGGCCR	1 cut(s)	82
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	255, 426
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	2 cut(s)	76, 944
Eco32I	GATATC	1 cut(s)	436
Eco47III	AGCGCT	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	715
EcoRV	GATATC	1 cut(s)	436
EcoT14I	CCWWGG	2 cut(s)	255, 426
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	255, 426
FaeI	CATG	6 cut(s)	67, 430, 474, 590, 672, 851
FatI	CATG	6 cut(s)	63, 426, 470, 586, 668, 847
FbaI	TGATCA	1 cut(s)	904
Fnu4HI	GCNGC	4 cut(s)	61, 175, 223, 666
FokI	GGATG	2 cut(s)	106, 836
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	4 cut(s)	61, 175, 223, 666
FspBI	CTAG	5 cut(s)	158, 323, 747, 812, 941
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	4 cut(s)	61, 175, 223, 666
GsuI	CTGGAG	1 cut(s)	616
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	5 cut(s)	84, 192, 405, 449, 732
HgaI	GACGC	2 cut(s)	154, 358
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	6 cut(s)	67, 430, 474, 590, 672, 851
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	2 cut(s)	205, 298
HindII	GTYRAC	2 cut(s)	205, 298
HindIII	AAGCTT	2 cut(s)	337, 647
HinfI	GANTC	2 cut(s)	143, 605
HpaI	GTTAAC	1 cut(s)	298
Hpy166II	GTNNAC	4 cut(s)	17, 205, 298, 417
Hpy188III	TCNNGA	3 cut(s)	38, 384, 747
Hpy8I	GTNNAC	4 cut(s)	17, 205, 298, 417
Hpy99I	CGWCG	2 cut(s)	203, 289
HpyAV	CCTTC	5 cut(s)	110, 193, 439, 495, 983
HpyCH4III	ACNGT	2 cut(s)	307, 820
HpyCH4IV	ACGT	3 cut(s)	261, 294, 300
HpyCH4V	TGCA	4 cut(s)	476, 615, 668, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	171, 323, 366, 662, 767
HpyF3I	CTNAG	2 cut(s)	272, 650
HpySE526I	ACGT	3 cut(s)	261, 294, 300
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	6 cut(s)	67, 430, 474, 590, 672, 851
HspAI	GCGC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	904
KspAI	GTTAAC	1 cut(s)	298
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	34, 394, 904
LmnI	GCTCC	2 cut(s)	60, 597
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	5 cut(s)	158, 323, 747, 812, 941
MaeII	ACGT	3 cut(s)	261, 294, 300
MaeIII	GTNAC	4 cut(s)	166, 301, 478, 606
MalI	GATC	3 cut(s)	36, 396, 906
MboI	GATC	3 cut(s)	34, 394, 904
MboII	GAAGA	5 cut(s)	41, 44, 149, 364, 504
MfeI	CAATTG	1 cut(s)	765
MhlI	GDGCHC	3 cut(s)	57, 507, 787
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	2 cut(s)	737, 765
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	137, 614
Mox20I	TGGCCA	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	3 cut(s)	246, 297, 695
MslI	CAYNNNNRTG	1 cut(s)	109
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	2 cut(s)	80, 222
MspR9I	CCNGG	1 cut(s)	717
MunI	CAATTG	1 cut(s)	765
MvaI	CCWGG	1 cut(s)	717
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	5 cut(s)	171, 323, 366, 662, 767
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	3 cut(s)	34, 394, 904
NheI	GCTAGC	3 cut(s)	322, 811, 940
NlaIII	CATG	6 cut(s)	67, 430, 474, 590, 672, 851
NlaIV	GGNNCC	1 cut(s)	784
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	4 cut(s)	166, 301, 478, 606
NspI	RCATGY	2 cut(s)	67, 474
OliI	CACNNNNGTG	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	62, 176, 224, 667
PleI	GAGTC	2 cut(s)	137, 613
PpsI	GAGTC	2 cut(s)	137, 613
Psp124BI	GAGCTC	1 cut(s)	57
Psp1406I	AACGTT	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	1 cut(s)	784
PspPI	GGNCC	2 cut(s)	190, 731
RsaI	GTAC	2 cut(s)	416, 797
RsaNI	GTAC	2 cut(s)	415, 796
RseI	CAYNNNNRTG	1 cut(s)	109
SacI	GAGCTC	1 cut(s)	57
SacII	CCGCGG	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	246, 297, 695
SatI	GCNGC	4 cut(s)	61, 175, 223, 666
Sau3AI	GATC	3 cut(s)	34, 394, 904
Sau96I	GGNCC	2 cut(s)	190, 731
SchI	GAGTC	2 cut(s)	137, 614
ScrFI	CCNGG	1 cut(s)	717
SduI	GDGCHC	3 cut(s)	57, 507, 787
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	2 cut(s)	306, 756
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	109
Sse9I	AATT	2 cut(s)	737, 765
SsiI	CCGC	9 cut(s)	58, 61, 78, 174, 208, 220, 222, 235, 978
SspMI	CTAG	5 cut(s)	158, 323, 747, 812, 941
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	715
StyI	CCWWGG	2 cut(s)	255, 426
TaaI	ACNGT	2 cut(s)	307, 820
TaiI	ACGT	3 cut(s)	264, 297, 303
TaqI	TCGA	1 cut(s)	438
TasI	AATT	2 cut(s)	737, 765
TauI	GCSGC	3 cut(s)	63, 177, 225
Tru1I	TTAA	3 cut(s)	246, 297, 695
Tru9I	TTAA	3 cut(s)	246, 297, 695
TscAI	CASTG	3 cut(s)	310, 457, 483
TseFI	GTSAC	4 cut(s)	166, 301, 478, 606
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	4 cut(s)	166, 301, 478, 606
TspDTI	ATGAA	3 cut(s)	150, 836, 884
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	3 cut(s)	310, 457, 483
XapI	RAATTY	1 cut(s)	737
XbaI	TCTAGA	1 cut(s)	746
XceI	RCATGY	2 cut(s)	67, 474
XspI	CTAG	5 cut(s)	158, 323, 747, 812, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.