Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011349

Physical Location & Seq

Genomic Coordinates Forward (+)

25878602 .. 25881431

Gene Structure 2830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G286200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGAATTGTGGGTTTAGAAGAGAGGGACAACATTGAGTTACAGGAATTCTGTCGTATGCTGGTGGCCTCCGCCGCAGGCCTCCACCTCACAAAACATCAACCCAACGACCTGCGTTTTCCATCCAAAACCGACGACTTGACCGACGACGACGACGAAGAAGGCAGATTGGTTTGCGTAACTAGCGGCGTTTCCTTCTTAGGCCTCGCCCTCGTCAACCGCCTCCTCCTCCGTGGCTACTCTGTCCGCATCCTCGTTGATAACCCAGAAGATGTAGAAAAGTTGGGGGAGATGAGTACAAGGACCAATAATAATAAGATATCAGCAGTTATGGCAAATCTAGCAGATGTTGAAAGCTTGTCTCAAGCATTCCATGGCTGTCGTGGCGTCTTCCACACCTCTGCATTCACTGACCCTGCTGGCCTCTCTGGTTACACTAAATCCATGGCTGAGATAGAAGTGAAGGCCAGTGAGAATGTGATGAAGGCATGTTCATTGACAGCTTCTGTGAGAAAATGTGTGCTGACTTCTTCACTTTTAGCCTGCGTATGGCATGACAGCAGCAACCAGCATAACCCATCCCCTGTAATTAACCATGACTGCTGGAGCAGTGAGTCACTTTGCACAGACAAAAAGCTCTGGTATGCCTTGGGCAAGCTGAGGGCAGAGAAGGCTGCGTGGAGAATAGCTGAGGAGAAGGGGATGAAGTTGGCAACCATCTGCCCAGCTCTCATCACTGGTCCTGAATTCTCTACCAGAAACCCAACAGCAACAATTGCATATCTCAAAGGATCCCAAGACATGTACCAAAGTGGGGTGCTAGCCACAGTAGATATCATGAGATTGGCCGACGCTCATGTGTGCGTGTTTGAGGCAATGAACAAGGCAGCATTTGGGAGGTACATTTGCTTTGATCAAGTCATTGAAACAGAGGAAGTGGCAGAGAAGTTAGCTCAGGAGACAAGCATGTCGAAGAACAAGATTATGGGCAACGGGTCCATCAATGTCCAAGTTCGATATGAATTGTCCAATAGGAAGCTTACAAACCTTTTGTCAGGATCACTGAGATATTGTTATAACCAAAGCCAGCATTACATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009964 GO:0009987 GO:0016491 GO:0016627 GO:0016628 GO:0019222 GO:0019438 GO:0019748 GO:0033729 GO:0042742 GO:0043207 GO:0044237 GO:0044249 GO:0044550 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0071704 GO:0080090 GO:0098542 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

3Beta_HSD Epimerase

Protein Analysis

367

Amino Acids

40.42

Weight (kDa)

5.89

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14700 AT5G14700
fragaria_vesca	FvH4_6g50850
malus_domestica	MD09G1031700.v1.1 MD17G1033400.v1.1
prunus_persica	Prupe.3G286200_v2.0.a1
pyrus_communis	pycom111g02510 pycom17g03060
rosa_chinensis	RchiOBHm_Chr2g0172231
rosa_laevigata	RLG00000022098
rosa_multiflora	Rmu_co8477553.1_g000001 Rmu_sc0024549.1_g000006 Rmu_sc0025855.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080040
rosa_rugosa	Rorug02G0558000
rosa_samantha	Rh2AG633100 Rh2BG646700 Rh2CG613600 Rh2DG661500
rosa_wichuraiana	Rw2G052410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1077
AasI	GACNNNNNNGTC	1 cut(s)	967
Acc36I	ACCTGC	1 cut(s)	120
AciI	CCGC	5 cut(s)	72, 75, 186, 220, 247
AclWI	GGATC	3 cut(s)	786, 799, 1066
AcoI	YGGCCR	1 cut(s)	846
AcsI	RAATTY	2 cut(s)	47, 746
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	3 cut(s)	298, 806, 902
AfiI	CCNNNNNNNGG	2 cut(s)	549, 814
AflIII	ACRYGT	1 cut(s)	801
AgsI	TTSAA	2 cut(s)	353, 926
AluBI	AGCT	8 cut(s)	357, 503, 637, 658, 689, 728, 953, 1039
AluI	AGCT	8 cut(s)	357, 503, 637, 658, 689, 728, 953, 1039
Alw26I	GTCTC	2 cut(s)	366, 953
AlwI	GGATC	3 cut(s)	786, 799, 1066
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	6 cut(s)	66, 79, 202, 421, 465, 846
ApeKI	GCWGC	3 cut(s)	561, 674, 887
ApoI	RAATTY	2 cut(s)	47, 746
ArsI	GACNNNNNNTTYG	2 cut(s)	1037, 1069
AspS9I	GGNCC	3 cut(s)	303, 740, 996
AsuNHI	GCTAGC	1 cut(s)	820
AvaII	GGWCC	3 cut(s)	303, 740, 996
BamHI	GGATCC	1 cut(s)	791
BbsI	GAAGAC	1 cut(s)	382
BbvCI	CCTCAGC	2 cut(s)	659, 690
BbvI	GCAGC	3 cut(s)	573, 661, 899
BccI	CCATC	4 cut(s)	130, 586, 725, 1007
BclI	TGATCA	1 cut(s)	913
BcoDI	GTCTC	2 cut(s)	366, 953
BfaI	CTAG	3 cut(s)	183, 341, 821
BfuAI	ACCTGC	1 cut(s)	120
BisI	GCNGC	5 cut(s)	75, 187, 562, 675, 888
BlsI	GCNGC	5 cut(s)	76, 188, 563, 676, 889
Bme18I	GGWCC	3 cut(s)	303, 740, 996
BmgT120I	GGNCC	3 cut(s)	303, 740, 996
BmiI	GGNNCC	2 cut(s)	793, 997
BmsI	GCATC	1 cut(s)	258
BmtI	GCTAGC	1 cut(s)	824
BpiI	GAAGAC	1 cut(s)	382
BpmI	CTGGAG	1 cut(s)	625
Bpu10I	CCTNAGC	3 cut(s)	659, 690, 954
BpuEI	CTTGAG	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	4 cut(s)	232, 373, 444, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	549, 814
Bse1I	ACTGG	2 cut(s)	468, 742
Bse3DI	GCAATG	1 cut(s)	882
BseDI	CCNNGG	4 cut(s)	232, 373, 444, 648
BseGI	GGATG	4 cut(s)	122, 249, 578, 708
BseLI	CCNNNNNNNGG	2 cut(s)	549, 814
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	5 cut(s)	441, 650, 681, 968, 1055
BseNI	ACTGG	2 cut(s)	468, 742
BseRI	GAGGAG	3 cut(s)	215, 218, 707
BseXI	GCAGC	3 cut(s)	573, 661, 899
BseYI	CCCAGC	1 cut(s)	724
BshFI	GGCC	6 cut(s)	68, 81, 204, 423, 467, 848
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	549, 814
BsmAI	GTCTC	2 cut(s)	366, 953
BsmFI	GGGAC	1 cut(s)	41
BsmI	GAATGC	2 cut(s)	368, 404
BsnI	GGCC	6 cut(s)	68, 81, 204, 423, 467, 848
Bsp143I	GATC	3 cut(s)	791, 913, 1058
Bsp19I	CCATGG	2 cut(s)	373, 444
BspACI	CCGC	5 cut(s)	72, 75, 186, 220, 247
BspANI	GGCC	6 cut(s)	68, 81, 204, 423, 467, 848
BspCNI	CTCAG	5 cut(s)	442, 651, 682, 967, 1056
BspHI	TCATGA	1 cut(s)	837
BspLI	GGNNCC	2 cut(s)	793, 997
BspMI	ACCTGC	1 cut(s)	120
BspOI	GCTAGC	1 cut(s)	824
BspPI	GGATC	3 cut(s)	786, 799, 1066
BsrDI	GCAATG	1 cut(s)	882
BsrI	ACTGG	2 cut(s)	468, 742
BssECI	CCNNGG	4 cut(s)	232, 373, 444, 648
BssMI	GATC	3 cut(s)	791, 913, 1058
BssNI	GRCGYC	1 cut(s)	387
BssT1I	CCWWGG	3 cut(s)	373, 444, 648
Bst4CI	ACNGT	1 cut(s)	829
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	387
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstC8I	GCNNGC	6 cut(s)	79, 421, 544, 656, 822, 1088
BstDEI	CTNAG	6 cut(s)	199, 450, 659, 690, 954, 1064
BstDSI	CCRYGG	3 cut(s)	232, 373, 444
BstF5I	GGATG	4 cut(s)	122, 249, 578, 708
BstKTI	GATC	3 cut(s)	794, 916, 1061
BstMAI	GTCTC	2 cut(s)	366, 953
BstMBI	GATC	3 cut(s)	791, 913, 1058
BstMWI	GCNNNNNNNGC	7 cut(s)	74, 183, 332, 341, 384, 671, 776
BstNSI	RCATGY	3 cut(s)	492, 805, 970
BstV1I	GCAGC	3 cut(s)	573, 661, 899
BstV2I	GAAGAC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	791
BsuRI	GGCC	6 cut(s)	68, 81, 204, 423, 467, 848
BtgI	CCRYGG	3 cut(s)	232, 373, 444
BtsCI	GGATG	4 cut(s)	122, 249, 578, 708
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	5 cut(s)	408, 475, 616, 735, 1061
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	6 cut(s)	79, 421, 544, 656, 822, 1088
CaiI	CAGNNNCTG	1 cut(s)	506
CciI	TCATGA	1 cut(s)	837
Cfr13I	GGNCC	3 cut(s)	303, 740, 996
CseI	GACGC	2 cut(s)	376, 860
Csp6I	GTAC	3 cut(s)	297, 805, 901
CviAII	CATG	9 cut(s)	374, 445, 489, 554, 596, 802, 838, 857, 967
CviQI	GTAC	3 cut(s)	297, 805, 901
DdeI	CTNAG	6 cut(s)	199, 450, 659, 690, 954, 1064
DpnI	GATC	3 cut(s)	793, 915, 1060
DpnII	GATC	3 cut(s)	791, 913, 1058
DrdI	GACNNNNNNGTC	1 cut(s)	967
DseDI	GACNNNNNNGTC	1 cut(s)	967
EaeI	YGGCCR	1 cut(s)	846
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	3 cut(s)	373, 444, 648
Eco147I	AGGCCT	2 cut(s)	81, 204
Eco32I	GATATC	2 cut(s)	321, 835
Eco47I	GGWCC	3 cut(s)	303, 740, 996
EcoRI	GAATTC	2 cut(s)	47, 746
EcoRV	GATATC	2 cut(s)	321, 835
EcoT14I	CCWWGG	3 cut(s)	373, 444, 648
ErhI	CCWWGG	3 cut(s)	373, 444, 648
FaeI	CATG	9 cut(s)	377, 448, 492, 557, 599, 805, 841, 860, 970
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	9 cut(s)	373, 444, 488, 553, 595, 801, 837, 856, 966
FbaI	TGATCA	1 cut(s)	913
Fnu4HI	GCNGC	5 cut(s)	75, 187, 562, 675, 888
FokI	GGATG	4 cut(s)	109, 236, 565, 715
Fsp4HI	GCNGC	5 cut(s)	75, 187, 562, 675, 888
FspBI	CTAG	3 cut(s)	183, 341, 821
GluI	GCNGC	5 cut(s)	75, 187, 562, 675, 888
GsaI	CCCAGC	1 cut(s)	728
GsuI	CTGGAG	1 cut(s)	625
HaeIII	GGCC	6 cut(s)	68, 81, 204, 423, 467, 848
HgaI	GACGC	2 cut(s)	376, 860
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	9 cut(s)	377, 448, 492, 557, 599, 805, 841, 860, 970
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	2 cut(s)	355, 1037
HinfI	GANTC	1 cut(s)	614
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188III	TCNNGA	4 cut(s)	743, 838, 956, 1056
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	6 cut(s)	137, 149, 152, 155, 158, 854
HpyAV	CCTTC	6 cut(s)	155, 205, 457, 478, 664, 691
HpyCH4III	ACNGT	1 cut(s)	829
HpyCH4V	TGCA	3 cut(s)	404, 624, 779
HpyF10VI	GCNNNNNNNGC	7 cut(s)	74, 183, 332, 341, 384, 671, 776
HpyF3I	CTNAG	6 cut(s)	199, 450, 659, 690, 954, 1064
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	9 cut(s)	377, 448, 492, 557, 599, 805, 841, 860, 970
Ksp22I	TGATCA	1 cut(s)	913
Kzo9I	GATC	3 cut(s)	791, 913, 1058
LmnI	GCTCC	1 cut(s)	606
Lsp1109I	GCAGC	3 cut(s)	573, 661, 899
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	3 cut(s)	183, 341, 821
MaeIII	GTNAC	4 cut(s)	39, 178, 431, 615
MalI	GATC	3 cut(s)	793, 915, 1060
MboI	GATC	3 cut(s)	791, 913, 1058
MboII	GAAGA	6 cut(s)	32, 170, 281, 382, 522, 985
MfeI	CAATTG	1 cut(s)	774
MflI	RGATCY	1 cut(s)	791
MluCI	AATT	6 cut(s)	6, 47, 588, 746, 774, 1022
MlyI	GAGTC	1 cut(s)	623
MseI	TTAA	1 cut(s)	591
MunI	CAATTG	1 cut(s)	774
Mva1269I	GAATGC	2 cut(s)	368, 404
MwoI	GCNNNNNNNGC	7 cut(s)	74, 183, 332, 341, 384, 671, 776
NcoI	CCATGG	2 cut(s)	373, 444
NdeII	GATC	3 cut(s)	791, 913, 1058
NheI	GCTAGC	1 cut(s)	820
NlaIII	CATG	9 cut(s)	377, 448, 492, 557, 599, 805, 841, 860, 970
NlaIV	GGNNCC	2 cut(s)	793, 997
NmuCI	GTSAC	1 cut(s)	615
NspI	RCATGY	3 cut(s)	492, 805, 970
PagI	TCATGA	1 cut(s)	837
PceI	AGGCCT	2 cut(s)	81, 204
PciI	ACATGT	1 cut(s)	801
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 153
PctI	GAATGC	2 cut(s)	368, 404
PkrI	GCNGC	5 cut(s)	76, 188, 563, 676, 889
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
PscI	ACATGT	1 cut(s)	801
PsiI	TTATAA	1 cut(s)	1077
PspFI	CCCAGC	1 cut(s)	724
PspN4I	GGNNCC	2 cut(s)	793, 997
PspPI	GGNCC	3 cut(s)	303, 740, 996
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	791
RsaI	GTAC	3 cut(s)	298, 806, 902
RsaNI	GTAC	3 cut(s)	297, 805, 901
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	5 cut(s)	75, 187, 562, 675, 888
Sau3AI	GATC	3 cut(s)	791, 913, 1058
Sau96I	GGNCC	3 cut(s)	303, 740, 996
SchI	GAGTC	1 cut(s)	623
SfaNI	GCATC	1 cut(s)	258
SinI	GGWCC	3 cut(s)	303, 740, 996
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	6 cut(s)	6, 47, 588, 746, 774, 1022
SseBI	AGGCCT	2 cut(s)	81, 204
SsiI	CCGC	5 cut(s)	72, 75, 186, 220, 247
SspMI	CTAG	3 cut(s)	183, 341, 821
StuI	AGGCCT	2 cut(s)	81, 204
StyI	CCWWGG	3 cut(s)	373, 444, 648
TaaI	ACNGT	1 cut(s)	829
TaqI	TCGA	2 cut(s)	971, 1015
TaqII	GACCGA	1 cut(s)	158
TasI	AATT	6 cut(s)	6, 47, 588, 746, 774, 1022
TatI	WGTACW	1 cut(s)	296
TauI	GCSGC	2 cut(s)	77, 189
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	5 cut(s)	415, 475, 616, 742, 1068
TseFI	GTSAC	1 cut(s)	615
TseI	GCWGC	3 cut(s)	561, 674, 887
Tsp45I	GTSAC	1 cut(s)	615
TspDTI	ATGAA	5 cut(s)	483, 497, 719, 893, 1035
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	5 cut(s)	415, 475, 616, 742, 1068
VpaK11BI	GGWCC	3 cut(s)	303, 740, 996
XapI	RAATTY	2 cut(s)	47, 746
XceI	RCATGY	3 cut(s)	492, 805, 970
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XspI	CTAG	3 cut(s)	183, 341, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.