FvH4_6g52030

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002814
Physical Location & Seq
Reverse (-)
38448408 .. 38451446
3039 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52030.t1

Sequence Viewer

Length: 825 bp
ATGTCTAAATCAGTCCTAGAGGTTCCTCCCAAGGGTGGGTTCAGCTTTGATCTCTGCAAAAGAAATGCCATGCTTTCGAAGAATGGGGTTCAGCTACCTCCGTTTACAAAGACCGGAACCACAATTGTTGGATTGATTTTTCAGGATGGTGTCATTCTTGGAGCTGATACCAGGGCCACCTCAGGGTCAATTGTGTGTGATAAGAACTGTGAGAAAATTCATTATATGGCACCAAACATATATTGTTGTGGGGCAGGAACTGCTGCCGATACTGAGGCAGTGACAGACATGGTCAGCTCACAGCTGCAGTTGCACCGTTACCATACTGGTAGGGAATCAAGAGTTGTGACCGCCCTCACCTATCTCAAAAGACATCTTTTCAGTTACCAAGGTCATGTCTCAGCGGCATTGGTGCTCGGTGGTGTTGATTTCACTGGCCCTCATTTGCACACGATTTATCCGCATGGGTCGACTGACACACTCCCTTATGCCACTATGGGTTCTGGCTCACTTGCCGCAATGGCCATCTTTGAGTCAAAGTACAAAGAAGGCCTGACTAGAGATGAAGGGGTACAGCTTGTTACAGAGGCTATTTGCTCTGGTATATTCAATGACTTGGGAAGTGGTTCCAATGTTGACATCTGTGTCATAACCAAGGGCAACAAGGAGTTCTTGCGGAACCACTTGAAGCCTACTCCAAGAACCTATGTCAGCCCTAAAGAATATGCATTTACAAAGAAAACAGAGGTTCTGTCGACGAAGATAACTCCTCTTAAGGAGAAGGTACAGATTACTGAAGTTGGTGGAGAGGCCATGGAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome

Protein Analysis

275

Amino Acids

29.65

Weight (kDa)

7.63

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 37 - 217 1.5e-49 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 644
AccB1I GGYRCC 1 cut(s) 229
AccI GTMKAC 2 cut(s) 470, 755
AciI CCGC 5 cut(s) 351, 404, 461, 516, 676
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 1 cut(s) 216
AcuI CTGAAG 1 cut(s) 816
AfaI GTAC 3 cut(s) 542, 573, 786
AfiI CCNNNNNNNGG 4 cut(s) 32, 35, 36, 183
AflII CTTAAG 1 cut(s) 773
AgsI TTSAA 2 cut(s) 610, 688
AjnI CCWGG 1 cut(s) 170
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 6 cut(s) 45, 94, 164, 297, 304, 577
AluI AGCT 6 cut(s) 45, 94, 164, 297, 304, 577
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 1 cut(s) 403
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 5 cut(s) 174, 436, 522, 550, 810
ApeKI GCWGC 2 cut(s) 263, 304
ApoI RAATTY 1 cut(s) 216
Asp700I GAANNNNTTC 1 cut(s) 625
AspS9I GGNCC 2 cut(s) 174, 437
AsuHPI GGTGA 1 cut(s) 349
AsuII TTCGAA 1 cut(s) 77
AxyI CCTNAGG 1 cut(s) 181
BalI TGGCCA 1 cut(s) 524
BanI GGYRCC 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 2 cut(s) 250, 291
BccI CCATC 2 cut(s) 140, 533
BciT130I CCWGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 2 cut(s) 17, 558
BfmI CTRYAG 1 cut(s) 305
BfrI CTTAAG 1 cut(s) 773
BglI GCCNNNNNGGC 1 cut(s) 521
BisI GCNGC 4 cut(s) 264, 305, 405, 516
BlsI GCNGC 4 cut(s) 265, 306, 406, 517
Bme1390I CCNGG 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 174, 437
BmiI GGNNCC 5 cut(s) 24, 118, 231, 628, 680
BmrFI CCNGG 1 cut(s) 172
Bpu14I TTCGAA 1 cut(s) 77
BsaJI CCNNGG 5 cut(s) 30, 171, 388, 654, 813
BsaWI WCCGGW 1 cut(s) 113
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 35, 36, 183
Bse1I ACTGG 2 cut(s) 331, 439
Bse21I CCTNAGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 525
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 5 cut(s) 30, 171, 388, 654, 813
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 4 cut(s) 32, 35, 36, 183
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 3 cut(s) 195, 264, 414
BseNI ACTGG 2 cut(s) 331, 439
BseRI GAGGAG 1 cut(s) 759
BseXI GCAGC 2 cut(s) 250, 291
BshFI GGCC 5 cut(s) 176, 438, 524, 552, 812
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 417
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 4 cut(s) 32, 35, 36, 183
BsmAI GTCTC 1 cut(s) 403
BsnI GGCC 5 cut(s) 176, 438, 524, 552, 812
Bsp119I TTCGAA 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 1 cut(s) 49
Bsp19I CCATGG 1 cut(s) 813
BspACI CCGC 5 cut(s) 351, 404, 461, 516, 676
BspANI GGCC 5 cut(s) 176, 438, 524, 552, 812
BspCNI CTCAG 3 cut(s) 194, 265, 413
BspLI GGNNCC 5 cut(s) 24, 118, 231, 628, 680
BspMAI CTGCAG 1 cut(s) 309
BspT104I TTCGAA 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 229
BspTI CTTAAG 1 cut(s) 773
BsrDI GCAATG 1 cut(s) 525
BsrI ACTGG 2 cut(s) 331, 439
BssECI CCNNGG 5 cut(s) 30, 171, 388, 654, 813
BssMI GATC 1 cut(s) 49
BssT1I CCWWGG 4 cut(s) 30, 388, 654, 813
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 2 cut(s) 209, 317
BstAFI CTTAAG 1 cut(s) 773
BstAPI GCANNNNNTGC 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 77
BstDEI CTNAG 3 cut(s) 181, 273, 400
BstDSI CCRYGG 1 cut(s) 813
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 3 cut(s) 260, 310, 521
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 305
BstV1I GCAGC 2 cut(s) 250, 291
Bsu36I CCTNAGG 1 cut(s) 181
BsuRI GGCC 5 cut(s) 176, 438, 524, 552, 812
BtgI CCRYGG 1 cut(s) 813
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 285, 432
CaiI CAGNNNCTG 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 174, 437
Csp6I GTAC 3 cut(s) 541, 572, 785
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 5 cut(s) 70, 289, 395, 464, 814
CviQI GTAC 3 cut(s) 541, 572, 785
DdeI CTNAG 3 cut(s) 181, 273, 400
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
DrdI GACNNNNNNGTC 1 cut(s) 644
DseDI GACNNNNNNGTC 1 cut(s) 644
EaeI YGGCCR 1 cut(s) 522
Eco130I CCWWGG 4 cut(s) 30, 388, 654, 813
Eco147I AGGCCT 1 cut(s) 552
Eco57I CTGAAG 1 cut(s) 816
Eco81I CCTNAGG 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 170
EcoT14I CCWWGG 4 cut(s) 30, 388, 654, 813
EcoT22I ATGCAT 1 cut(s) 730
ErhI CCWWGG 4 cut(s) 30, 388, 654, 813
FaeI CATG 5 cut(s) 73, 292, 398, 467, 817
FalI AAGNNNNNCTT 2 cut(s) 656, 688
FatI CATG 5 cut(s) 69, 288, 394, 463, 813
FblI GTMKAC 2 cut(s) 470, 755
Fnu4HI GCNGC 4 cut(s) 264, 305, 405, 516
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 4 cut(s) 264, 305, 405, 516
FspBI CTAG 2 cut(s) 17, 558
GluI GCNGC 4 cut(s) 264, 305, 405, 516
HaeIII GGCC 5 cut(s) 176, 438, 524, 552, 812
HapII CCGG 1 cut(s) 114
Hin1II CATG 5 cut(s) 73, 292, 398, 467, 817
HincII GTYRAC 3 cut(s) 471, 637, 756
HindII GTYRAC 3 cut(s) 471, 637, 756
HinfI GANTC 2 cut(s) 335, 533
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 4 cut(s) 105, 471, 637, 756
Hpy188III TCNNGA 2 cut(s) 143, 339
Hpy8I GTNNAC 4 cut(s) 105, 471, 637, 756
Hpy99I CGWCG 1 cut(s) 760
HpyAV CCTTC 3 cut(s) 542, 560, 775
HpyCH4III ACNGT 2 cut(s) 209, 317
HpyCH4V TGCA 5 cut(s) 57, 307, 313, 448, 728
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 310, 521
HpyF3I CTNAG 3 cut(s) 181, 273, 400
Hsp92II CATG 5 cut(s) 73, 292, 398, 467, 817
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 2 cut(s) 250, 291
MaeI CTAG 2 cut(s) 17, 558
MaeIII GTNAC 5 cut(s) 280, 317, 346, 383, 580
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 2 cut(s) 91, 772
MfeI CAATTG 2 cut(s) 123, 189
MhlI GDGCHC 1 cut(s) 417
MlsI TGGCCA 1 cut(s) 524
MluCI AATT 3 cut(s) 123, 189, 216
MluNI TGGCCA 1 cut(s) 524
MlyI GAGTC 1 cut(s) 542
MmeI TCCRAC 1 cut(s) 109
Mox20I TGGCCA 1 cut(s) 524
Mph1103I ATGCAT 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 625
MscI TGGCCA 1 cut(s) 524
MseI TTAA 1 cut(s) 774
Msp20I TGGCCA 1 cut(s) 524
MspA1I CMGCKG 2 cut(s) 304, 404
MspCI CTTAAG 1 cut(s) 773
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 172
MunI CAATTG 2 cut(s) 123, 189
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 3 cut(s) 260, 310, 521
NcoI CCATGG 1 cut(s) 813
NdeII GATC 1 cut(s) 49
NlaIII CATG 5 cut(s) 73, 292, 398, 467, 817
NlaIV GGNNCC 5 cut(s) 24, 118, 231, 628, 680
NmuCI GTSAC 2 cut(s) 280, 346
NsiI ATGCAT 1 cut(s) 730
NspV TTCGAA 1 cut(s) 77
PceI AGGCCT 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 625
PfeI GAWTC 1 cut(s) 335
PflFI GACNNNGTC 1 cut(s) 290
PkrI GCNGC 4 cut(s) 265, 306, 406, 517
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 5 cut(s) 24, 118, 231, 628, 680
PspPI GGNCC 2 cut(s) 174, 437
PstI CTGCAG 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 304
RsaI GTAC 3 cut(s) 542, 573, 786
RsaNI GTAC 3 cut(s) 541, 572, 785
SalI GTCGAC 2 cut(s) 469, 754
SaqAI TTAA 1 cut(s) 774
SatI GCNGC 4 cut(s) 264, 305, 405, 516
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 2 cut(s) 174, 437
SchI GAGTC 1 cut(s) 542
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 1 cut(s) 417
SfcI CTRYAG 1 cut(s) 305
SfuI TTCGAA 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 3 cut(s) 123, 189, 216
SseBI AGGCCT 1 cut(s) 552
SsiI CCGC 5 cut(s) 351, 404, 461, 516, 676
SspMI CTAG 2 cut(s) 17, 558
StuI AGGCCT 1 cut(s) 552
StyD4I CCNGG 1 cut(s) 170
StyI CCWWGG 4 cut(s) 30, 388, 654, 813
TaaI ACNGT 2 cut(s) 209, 317
TaqI TCGA 3 cut(s) 77, 470, 755
TasI AATT 3 cut(s) 123, 189, 216
TatI WGTACW 1 cut(s) 540
TauI GCSGC 2 cut(s) 407, 518
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 1 cut(s) 774
Tru9I TTAA 1 cut(s) 774
TscAI CASTG 2 cut(s) 285, 439
TseFI GTSAC 2 cut(s) 280, 346
TseI GCWGC 2 cut(s) 263, 304
Tsp45I GTSAC 2 cut(s) 280, 346
TspDTI ATGAA 2 cut(s) 209, 579
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 2 cut(s) 285, 439
Tth111I GACNNNGTC 1 cut(s) 290
Vha464I CTTAAG 1 cut(s) 773
XapI RAATTY 1 cut(s) 216
XmiI GTMKAC 2 cut(s) 470, 755
XmnI GAANNNNTTC 1 cut(s) 625
XspI CTAG 2 cut(s) 17, 558
Zsp2I ATGCAT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.