Rh2DG675100

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002814
Physical Location & Seq
Reverse (-)
89658921 .. 89660820
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG675100.1

Sequence Viewer

Length: 825 bp
ATGGCTAAATCAATCATTGATGTTCCTCCCAAGGGTGGATTTAGCTTTGATCTATGTAAAAGAAATGCTATGCTTTCGAAGAACGCGGTTCAGCTACCTCCGTTTACCAAGACAGGAACCACCATTGTTGGGTTAATTTTTCAGGATGGTGTCATTCTTGGAGCTGATACCAGGGCCACCTCAGGGTCAATTGTGTGTGATAAAAACTGTGAGAAAATTCATTACATGGCACCAAACATATATTGCTGTGGGGCAGGAACTGCTGCTGATACTGAGGCAGTGACAGACATGGTCAGCTCACAGCTGCAATTGCACCGTTACCACACTGGTAGGGAATCAAGGGTTGTGACTGCCCTCACCTATCTCAAAAGACATCTTTTCAGTTACCAGGGTCATGTCTCGGCTGCATTGGTGCTTGGGGGTGTTGATTTCACCGGCCCTCATTTGCACACTATTTATCCACATGGGTCGACTGACACACTCCCTTATGCTACTATGGGTTCCGGCTCACTTGCTGCAATGGCCATCTTCGAGTCCAAGTACAAAGAAGGCCTGACTAGAGATGAAGGGGTACAGCTTGTTACAGAGGCTATTTGCTCTGGTATATTCAATGATTTGGGAAGTGGTAGCAATGTCGATATCTGTGTAATAACCAAGGGCAACAAAGAATTCCTGCGGAACCATTTGCAGCCTAATCCCCGAACCTATGTCAGCCCCAAAGAATACTCATTCACCAAGAAGACCGAGGTTCTGTTAACCAAGATAACACCATTGAAGGAGAAGGTAGAAGTTATAGAAGTAGGAGGAGACGCCATGGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome

Protein Analysis

274

Amino Acids

29.68

Weight (kDa)

6.75

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 37 - 217 1.5e-49 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 470
AccII CGCG 1 cut(s) 86
AciI CCGC 2 cut(s) 86, 676
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 2 cut(s) 216, 668
AcyI GRCGYC 1 cut(s) 810
AfaI GTAC 2 cut(s) 542, 573
AfiI CCNNNNNNNGG 4 cut(s) 32, 35, 129, 183
AgsI TTSAA 2 cut(s) 610, 775
AjnI CCWGG 2 cut(s) 170, 387
AluBI AGCT 6 cut(s) 45, 94, 164, 297, 304, 577
AluI AGCT 6 cut(s) 45, 94, 164, 297, 304, 577
Alw26I GTCTC 2 cut(s) 403, 801
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 4 cut(s) 174, 436, 522, 550
ApeKI GCWGC 5 cut(s) 263, 304, 404, 515, 688
ApoI RAATTY 2 cut(s) 216, 668
AspS9I GGNCC 2 cut(s) 174, 437
AsuHPI GGTGA 3 cut(s) 349, 424, 724
AsuII TTCGAA 1 cut(s) 77
AxyI CCTNAGG 1 cut(s) 181
BalI TGGCCA 1 cut(s) 524
BanI GGYRCC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 746
BbvI GCAGC 5 cut(s) 250, 291, 391, 502, 700
BccI CCATC 2 cut(s) 140, 533
BciT130I CCWGG 2 cut(s) 172, 389
BcoDI GTCTC 2 cut(s) 403, 801
BfaI CTAG 1 cut(s) 558
BisI GCNGC 5 cut(s) 264, 305, 405, 516, 689
BlsI GCNGC 5 cut(s) 265, 306, 406, 517, 690
Bme1390I CCNGG 2 cut(s) 172, 389
BmgT120I GGNCC 2 cut(s) 174, 437
BmiI GGNNCC 4 cut(s) 118, 231, 502, 680
BmrFI CCNGG 2 cut(s) 172, 389
BpiI GAAGAC 1 cut(s) 746
Bpu14I TTCGAA 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 810
BsaJI CCNNGG 6 cut(s) 30, 171, 388, 654, 744, 813
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 35, 129, 183
Bse118I RCCGGY 1 cut(s) 434
Bse1I ACTGG 1 cut(s) 331
Bse21I CCTNAGG 1 cut(s) 181
Bse3DI GCAATG 2 cut(s) 525, 637
BseBI CCWGG 2 cut(s) 172, 389
BseDI CCNNGG 6 cut(s) 30, 171, 388, 654, 744, 813
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 4 cut(s) 32, 35, 129, 183
BseMI GCAATG 2 cut(s) 525, 637
BseMII CTCAG 2 cut(s) 195, 264
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 1 cut(s) 819
BseXI GCAGC 5 cut(s) 250, 291, 391, 502, 700
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 4 cut(s) 176, 438, 524, 552
BshNI GGYRCC 1 cut(s) 229
BsiSI CCGG 2 cut(s) 435, 504
BslI CCNNNNNNNGG 4 cut(s) 32, 35, 129, 183
BsmAI GTCTC 2 cut(s) 403, 801
BsmBI CGTCTC 1 cut(s) 801
BsnI GGCC 4 cut(s) 176, 438, 524, 552
Bsp119I TTCGAA 1 cut(s) 77
Bsp143I GATC 1 cut(s) 49
Bsp19I CCATGG 1 cut(s) 813
BspACI CCGC 2 cut(s) 86, 676
BspANI GGCC 4 cut(s) 176, 438, 524, 552
BspCNI CTCAG 2 cut(s) 194, 265
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 4 cut(s) 118, 231, 502, 680
BspT104I TTCGAA 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 229
BsrDI GCAATG 2 cut(s) 525, 637
BsrFI RCCGGY 1 cut(s) 434
BsrI ACTGG 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 434
BssECI CCNNGG 6 cut(s) 30, 171, 388, 654, 744, 813
BssMI GATC 1 cut(s) 49
BssNI GRCGYC 1 cut(s) 810
BssT1I CCWWGG 3 cut(s) 30, 654, 813
Bst2UI CCWGG 2 cut(s) 172, 389
Bst4CI ACNGT 2 cut(s) 209, 317
BstACI GRCGYC 1 cut(s) 810
BstAPI GCANNNNNTGC 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 77
BstDEI CTNAG 2 cut(s) 181, 273
BstDSI CCRYGG 1 cut(s) 813
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 2 cut(s) 403, 801
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 3 cut(s) 260, 310, 521
BstNI CCWGG 2 cut(s) 172, 389
BstSCI CCNGG 2 cut(s) 170, 387
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 5 cut(s) 250, 291, 391, 502, 700
BstV2I GAAGAC 1 cut(s) 746
Bsu36I CCTNAGG 1 cut(s) 181
BsuRI GGCC 4 cut(s) 176, 438, 524, 552
BtgI CCRYGG 1 cut(s) 813
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 285, 324
CaiI CAGNNNCTG 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 434
Cfr13I GGNCC 2 cut(s) 174, 437
CseI GACGC 1 cut(s) 818
Csp6I GTAC 2 cut(s) 541, 572
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 5 cut(s) 226, 289, 395, 464, 814
CviQI GTAC 2 cut(s) 541, 572
DdeI CTNAG 2 cut(s) 181, 273
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 522
Eco130I CCWWGG 3 cut(s) 30, 654, 813
Eco147I AGGCCT 1 cut(s) 552
Eco32I GATATC 1 cut(s) 640
Eco81I CCTNAGG 1 cut(s) 181
EcoRI GAATTC 1 cut(s) 668
EcoRII CCWGG 2 cut(s) 170, 387
EcoRV GATATC 1 cut(s) 640
EcoT14I CCWWGG 3 cut(s) 30, 654, 813
ErhI CCWWGG 3 cut(s) 30, 654, 813
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 5 cut(s) 229, 292, 398, 467, 817
FatI CATG 5 cut(s) 225, 288, 394, 463, 813
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 5 cut(s) 264, 305, 405, 516, 689
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 5 cut(s) 264, 305, 405, 516, 689
FspBI CTAG 1 cut(s) 558
GluI GCNGC 5 cut(s) 264, 305, 405, 516, 689
HaeIII GGCC 4 cut(s) 176, 438, 524, 552
HapII CCGG 2 cut(s) 435, 504
HgaI GACGC 1 cut(s) 818
Hin1I GRCGYC 1 cut(s) 810
Hin1II CATG 5 cut(s) 229, 292, 398, 467, 817
HincII GTYRAC 2 cut(s) 471, 756
HindII GTYRAC 2 cut(s) 471, 756
HinfI GANTC 2 cut(s) 335, 533
HpaI GTTAAC 1 cut(s) 756
HpaII CCGG 2 cut(s) 435, 504
HphI GGTGA 3 cut(s) 349, 424, 724
Hpy166II GTNNAC 3 cut(s) 105, 471, 756
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 3 cut(s) 105, 471, 756
HpyAV CCTTC 4 cut(s) 542, 560, 769, 775
HpyCH4III ACNGT 2 cut(s) 209, 317
HpyCH4V TGCA 6 cut(s) 307, 313, 407, 448, 518, 688
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 310, 521
HpyF3I CTNAG 2 cut(s) 181, 273
Hsp92I GRCGYC 1 cut(s) 810
Hsp92II CATG 5 cut(s) 229, 292, 398, 467, 817
KspAI GTTAAC 1 cut(s) 756
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 5 cut(s) 250, 291, 391, 502, 700
MaeI CTAG 1 cut(s) 558
MaeIII GTNAC 5 cut(s) 280, 317, 346, 383, 580
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 3 cut(s) 91, 520, 751
MfeI CAATTG 2 cut(s) 189, 308
MlsI TGGCCA 1 cut(s) 524
MluCI AATT 5 cut(s) 135, 189, 216, 308, 668
MluNI TGGCCA 1 cut(s) 524
MlyI GAGTC 1 cut(s) 542
MnlI CCTC 9 cut(s) 36, 108, 190, 268, 365, 450, 580, 739, 797
Mox20I TGGCCA 1 cut(s) 524
MscI TGGCCA 1 cut(s) 524
MseI TTAA 2 cut(s) 134, 755
Msp20I TGGCCA 1 cut(s) 524
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 2 cut(s) 435, 504
MspR9I CCNGG 2 cut(s) 172, 389
MunI CAATTG 2 cut(s) 189, 308
MvaI CCWGG 2 cut(s) 172, 389
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 3 cut(s) 260, 310, 521
NcoI CCATGG 1 cut(s) 813
NdeII GATC 1 cut(s) 49
NlaIII CATG 5 cut(s) 229, 292, 398, 467, 817
NlaIV GGNNCC 4 cut(s) 118, 231, 502, 680
NmeAIII GCCGAG 1 cut(s) 380
NmuCI GTSAC 2 cut(s) 280, 346
NspV TTCGAA 1 cut(s) 77
PceI AGGCCT 1 cut(s) 552
PfeI GAWTC 1 cut(s) 335
PflFI GACNNNGTC 1 cut(s) 290
PkrI GCNGC 5 cut(s) 265, 306, 406, 517, 690
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
Psp6I CCWGG 2 cut(s) 170, 387
PspGI CCWGG 2 cut(s) 170, 387
PspN4I GGNNCC 4 cut(s) 118, 231, 502, 680
PspPI GGNCC 2 cut(s) 174, 437
PstNI CAGNNNCTG 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 304
RsaI GTAC 2 cut(s) 542, 573
RsaNI GTAC 2 cut(s) 541, 572
SalI GTCGAC 1 cut(s) 469
SaqAI TTAA 2 cut(s) 134, 755
SatI GCNGC 5 cut(s) 264, 305, 405, 516, 689
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 2 cut(s) 174, 437
SchI GAGTC 1 cut(s) 542
ScrFI CCNGG 2 cut(s) 172, 389
SfuI TTCGAA 1 cut(s) 77
Sse9I AATT 5 cut(s) 135, 189, 216, 308, 668
SseBI AGGCCT 1 cut(s) 552
SsiI CCGC 2 cut(s) 86, 676
SspMI CTAG 1 cut(s) 558
StuI AGGCCT 1 cut(s) 552
StyD4I CCNGG 2 cut(s) 170, 387
StyI CCWWGG 3 cut(s) 30, 654, 813
TaaI ACNGT 2 cut(s) 209, 317
TaqI TCGA 4 cut(s) 77, 470, 531, 636
TaqII GACCGA 1 cut(s) 758
TasI AATT 5 cut(s) 135, 189, 216, 308, 668
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 2 cut(s) 134, 755
Tru9I TTAA 2 cut(s) 134, 755
TscAI CASTG 2 cut(s) 285, 331
TseFI GTSAC 2 cut(s) 280, 346
TseI GCWGC 5 cut(s) 263, 304, 404, 515, 688
Tsp45I GTSAC 2 cut(s) 280, 346
TspDTI ATGAA 2 cut(s) 209, 579
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 2 cut(s) 285, 331
Tth111I GACNNNGTC 1 cut(s) 290
XapI RAATTY 2 cut(s) 216, 668
XmiI GTMKAC 1 cut(s) 470
XspI CTAG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.