Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002538.1

Orthogroup ID

OG0002814

Physical Location & Seq

Genomic Coordinates Forward (+)

102104 .. 104566

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002538.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgtctaagctagccatggatgttcctcctaagggtgggtttagctttgatctctgtaagcgaaatgcgatgctggccaaggatggggttcagctacctccttttagaaagaccggaaccaccattgtgggtttgatttatcaggatggcgtggtcctcggagcagatacaagggccactgaaggacccattgtagctgataagaactgcgagaagatccattacttggcgcccaatatttattgctgtggtgcgggaactgctgctgacactgaggcagttacagatatggtaagcgcacagctgcagttgcaccgttaccataccggcagggagtcaagggttgtgactgccctcacctatctcaaaagacatcttttcagttaccaaggtcatgtctcggctgcattggtgctgggtggtgttgatttcaccggccctcatttgcacactatatatcctcatggatctactgacacacttccttatgctactatgggctctggctcactggctgcgatggcaatatttgagtccaagtacaaggaggggttaacaagagatgaaggtgtacaattggtgacagaagctatttgtgcaggaatcttcaatgaccttggaagtggtagcaatgttgacatttgtgttataaccaagggaagcaaagaatatctccgaaaccaccttcagcctaatccccgcacatatgttactcccaaggaatatactttcagcaagaagactgaagtactctccacccttgttactacactgaaggagagagtagaagtggtggaagctggagataaaatggaagagctggtgcaaaaagtgctgccggcacacaaacgagaaagttggcagaactggccatcagcactatacccgcacgttgccaggcctatttccacggatgacctcagaccgagacttgagaggaaggctacttatgatgagactaaaaatgatatcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

325

Amino Acids

35.78

Weight (kDa)

7.16

Isoelectric Point (pI)

29.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27430 AT3G27430 AT3G27430 AT5G40580 AT5G40580 AT5G40580 AT5G40580
fragaria_vesca	FvH4_6g52030 FvH4_6g52030
malus_domestica	MD09G1020800.v1.1
prunus_persica	Prupe.3G295500_v2.0.a1 Prupe.3G295500_v2.0.a1
pyrus_communis	pycom111g01750 pycom17g01770
rosa_chinensis	RchiOBHm_Chr2g0173491 RchiOBHm_Chr2g0173541 RchiOBHm_Chr3g0468681
rosa_laevigata	RLG00000022199
rosa_multiflora	Rmu_sc0002538.1_g000026 Rmu_sc0011538.1_g000006 Rmu_sc0025203.1_g000001 Rmu_sc0033138.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078800 Rroxscaffold_2G00078810 Rroxscaffold_6G00412650
rosa_rugosa	Rorug02G0571200
rosa_samantha	Rh2AG649400 Rh2AG649900 Rh2BG660000 Rh2BG660300 Rh2CG625300 Rh2DG675100 Rh2DG675700 Rh3AG145100 Rh3BG167600 Rh3DG166400
rosa_wichuraiana	Rw2G053320 Rw2G053340 Rw3G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
AccB1I	GGYRCC	1 cut(s)	229
AccB7I	CCANNNNNTGG	1 cut(s)	226
AciI	CCGC	3 cut(s)	254, 700, 887
AclWI	GGATC	2 cut(s)	211, 475
AcoI	YGGCCR	2 cut(s)	75, 869
AcuI	CTGAAG	4 cut(s)	201, 671, 765, 794
AcyI	GRCGYC	1 cut(s)	230
AfaI	GTAC	3 cut(s)	542, 573, 750
AfiI	CCNNNNNNNGG	4 cut(s)	32, 35, 84, 226
AgsI	TTSAA	1 cut(s)	610
AjnI	CCWGG	1 cut(s)	896
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	8 cut(s)	10, 45, 94, 197, 304, 590, 800, 820
AluI	AGCT	8 cut(s)	10, 45, 94, 197, 304, 590, 800, 820
Alw26I	GTCTC	3 cut(s)	403, 922, 950
AlwI	GGATC	2 cut(s)	211, 475
AoxI	GGCC	5 cut(s)	75, 174, 436, 869, 899
ApeKI	GCWGC	5 cut(s)	263, 304, 404, 515, 835
AspLEI	GCGC	2 cut(s)	232, 299
AspS9I	GGNCC	4 cut(s)	154, 174, 185, 437
AsuHPI	GGTGA	3 cut(s)	349, 424, 592
AsuNHI	GCTAGC	1 cut(s)	10
AvaII	GGWCC	2 cut(s)	154, 185
AxyI	CCTNAGG	1 cut(s)	30
BalI	TGGCCA	2 cut(s)	77, 871
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	503
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
BbsI	GAAGAC	1 cut(s)	746
BbvI	GCAGC	5 cut(s)	250, 291, 391, 502, 822
BccI	CCATC	4 cut(s)	77, 140, 514, 880
BciT130I	CCWGG	1 cut(s)	898
BcoDI	GTCTC	3 cut(s)	403, 922, 950
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	305
BfoI	RGCGCY	1 cut(s)	233
BisI	GCNGC	5 cut(s)	264, 305, 405, 516, 836
BlsI	GCNGC	5 cut(s)	265, 306, 406, 517, 837
BmcAI	AGTACT	1 cut(s)	750
Bme1390I	CCNGG	1 cut(s)	898
Bme18I	GGWCC	2 cut(s)	154, 185
BmgT120I	GGNCC	4 cut(s)	154, 174, 185, 437
BmiI	GGNNCC	3 cut(s)	118, 187, 231
BmrFI	CCNGG	1 cut(s)	898
BmsI	GCATC	1 cut(s)	60
BmtI	GCTAGC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	746
BpmI	CTGGAG	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	953
BsaHI	GRCGYC	1 cut(s)	230
BsaJI	CCNNGG	8 cut(s)	15, 78, 157, 388, 616, 654, 717, 909
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 35, 84, 226
Bse118I	RCCGGY	3 cut(s)	326, 434, 838
Bse1I	ACTGG	2 cut(s)	516, 872
Bse21I	CCTNAGG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	637
BseBI	CCWGG	1 cut(s)	898
BseDI	CCNNGG	8 cut(s)	15, 78, 157, 388, 616, 654, 717, 909
BseGI	GGATG	4 cut(s)	25, 88, 151, 919
BseLI	CCNNNNNNNGG	4 cut(s)	32, 35, 84, 226
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	2 cut(s)	264, 934
BseNI	ACTGG	2 cut(s)	516, 872
BseXI	GCAGC	5 cut(s)	250, 291, 391, 502, 822
BseYI	CCCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	618
BshFI	GGCC	5 cut(s)	77, 176, 438, 871, 901
BshNI	GGYRCC	1 cut(s)	229
BsiSI	CCGG	4 cut(s)	114, 327, 435, 839
BslI	CCNNNNNNNGG	4 cut(s)	32, 35, 84, 226
BsmAI	GTCTC	3 cut(s)	403, 922, 950
BsnI	GGCC	5 cut(s)	77, 176, 438, 871, 901
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp1407I	TGTACA	1 cut(s)	571
Bsp143I	GATC	3 cut(s)	49, 216, 467
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	3 cut(s)	254, 700, 887
BspANI	GGCC	5 cut(s)	77, 176, 438, 871, 901
BspCNI	CTCAG	2 cut(s)	265, 933
BspLI	GGNNCC	3 cut(s)	118, 187, 231
BspMAI	CTGCAG	1 cut(s)	309
BspOI	GCTAGC	1 cut(s)	14
BspPI	GGATC	2 cut(s)	211, 475
BspQI	GCTCTTC	1 cut(s)	810
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	637
BsrFI	RCCGGY	3 cut(s)	326, 434, 838
BsrGI	TGTACA	1 cut(s)	571
BsrI	ACTGG	2 cut(s)	516, 872
BssAI	RCCGGY	3 cut(s)	326, 434, 838
BssECI	CCNNGG	8 cut(s)	15, 78, 157, 388, 616, 654, 717, 909
BssMI	GATC	3 cut(s)	49, 216, 467
BssNI	GRCGYC	1 cut(s)	230
BssT1I	CCWWGG	6 cut(s)	15, 78, 388, 616, 654, 717
Bst2UI	CCWGG	1 cut(s)	898
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	810
BstACI	GRCGYC	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	832
BstAUI	TGTACA	1 cut(s)	571
BstC8I	GCNNGC	3 cut(s)	12, 75, 840
BstDEI	CTNAG	4 cut(s)	6, 30, 273, 920
BstDSI	CCRYGG	2 cut(s)	15, 909
BstF5I	GGATG	4 cut(s)	25, 88, 151, 919
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	2 cut(s)	232, 299
BstKTI	GATC	3 cut(s)	52, 219, 470
BstMAI	GTCTC	3 cut(s)	403, 922, 950
BstMBI	GATC	3 cut(s)	49, 216, 467
BstMWI	GCNNNNNNNGC	7 cut(s)	74, 260, 310, 521, 596, 832, 868
BstNI	CCWGG	1 cut(s)	898
BstSCI	CCNGG	1 cut(s)	896
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	5 cut(s)	250, 291, 391, 502, 822
BstV2I	GAAGAC	1 cut(s)	746
BstX2I	RGATCY	2 cut(s)	216, 467
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	2 cut(s)	216, 467
Bsu36I	CCTNAGG	1 cut(s)	30
BsuRI	GGCC	5 cut(s)	77, 176, 438, 871, 901
BtgI	CCRYGG	2 cut(s)	15, 909
BtgZI	GCGATG	2 cut(s)	83, 533
BtsCI	GGATG	4 cut(s)	25, 88, 151, 919
BtsIMutI	CAGTG	4 cut(s)	177, 270, 509, 770
Cac8I	GCNNGC	3 cut(s)	12, 75, 840
CfoI	GCGC	2 cut(s)	232, 299
Cfr10I	RCCGGY	3 cut(s)	326, 434, 838
Cfr13I	GGNCC	4 cut(s)	154, 174, 185, 437
Csp6I	GTAC	3 cut(s)	541, 572, 749
CviAII	CATG	3 cut(s)	16, 395, 464
CviQI	GTAC	3 cut(s)	541, 572, 749
DdeI	CTNAG	4 cut(s)	6, 30, 273, 920
DinI	GGCGCC	1 cut(s)	231
DpnI	GATC	3 cut(s)	51, 218, 469
DpnII	GATC	3 cut(s)	49, 216, 467
EaeI	YGGCCR	2 cut(s)	75, 869
Eam1104I	CTCTTC	1 cut(s)	810
EarI	CTCTTC	1 cut(s)	810
Eco130I	CCWWGG	6 cut(s)	15, 78, 388, 616, 654, 717
Eco147I	AGGCCT	1 cut(s)	901
Eco24I	GRGCYC	1 cut(s)	503
Eco32I	GATATC	1 cut(s)	970
Eco47I	GGWCC	2 cut(s)	154, 185
Eco57I	CTGAAG	4 cut(s)	201, 671, 765, 794
Eco81I	CCTNAGG	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	896
EcoRV	GATATC	1 cut(s)	970
EcoT14I	CCWWGG	6 cut(s)	15, 78, 388, 616, 654, 717
EcoT38I	GRGCYC	1 cut(s)	503
EgeI	GGCGCC	1 cut(s)	231
EheI	GGCGCC	1 cut(s)	231
ErhI	CCWWGG	6 cut(s)	15, 78, 388, 616, 654, 717
FaeI	CATG	3 cut(s)	19, 398, 467
FatI	CATG	3 cut(s)	15, 394, 463
FauI	CCCGC	3 cut(s)	247, 707, 894
FauNDI	CATATG	1 cut(s)	706
Fnu4HI	GCNGC	5 cut(s)	264, 305, 405, 516, 836
FokI	GGATG	4 cut(s)	32, 95, 158, 926
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	5 cut(s)	264, 305, 405, 516, 836
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	2 cut(s)	231, 298
GluI	GCNGC	5 cut(s)	264, 305, 405, 516, 836
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	822
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	5 cut(s)	77, 176, 438, 871, 901
HapII	CCGG	4 cut(s)	114, 327, 435, 839
HhaI	GCGC	2 cut(s)	232, 299
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	19, 398, 467
Hin6I	GCGC	2 cut(s)	230, 297
HinP1I	GCGC	2 cut(s)	230, 297
HincII	GTYRAC	2 cut(s)	555, 637
HindII	GTYRAC	2 cut(s)	555, 637
HinfI	GANTC	3 cut(s)	335, 533, 603
HpaI	GTTAAC	1 cut(s)	555
HpaII	CCGG	4 cut(s)	114, 327, 435, 839
HphI	GGTGA	3 cut(s)	349, 424, 592
Hpy166II	GTNNAC	3 cut(s)	555, 572, 637
Hpy188I	TCNGA	3 cut(s)	161, 677, 923
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	3 cut(s)	555, 572, 637
HpyAV	CCTTC	5 cut(s)	176, 560, 695, 769, 934
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	1 cut(s)	891
HpyCH4V	TGCA	6 cut(s)	307, 313, 407, 448, 599, 826
HpyF10VI	GCNNNNNNNGC	7 cut(s)	74, 260, 310, 521, 596, 832, 868
HpyF3I	CTNAG	4 cut(s)	6, 30, 273, 920
HpySE526I	ACGT	1 cut(s)	891
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	3 cut(s)	19, 398, 467
HspAI	GCGC	2 cut(s)	230, 297
KasI	GGCGCC	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	838
KroNI	GCCGGC	1 cut(s)	840
KspAI	GTTAAC	1 cut(s)	555
Kzo9I	GATC	3 cut(s)	49, 216, 467
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	5 cut(s)	250, 291, 391, 502, 822
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	891
MaeIII	GTNAC	7 cut(s)	280, 317, 346, 383, 580, 709, 763
MalI	GATC	3 cut(s)	51, 218, 469
MboI	GATC	3 cut(s)	49, 216, 467
MboII	GAAGA	4 cut(s)	226, 598, 751, 827
MfeI	CAATTG	1 cut(s)	575
MflI	RGATCY	2 cut(s)	216, 467
MhlI	GDGCHC	1 cut(s)	503
MlsI	TGGCCA	2 cut(s)	77, 871
MluCI	AATT	1 cut(s)	575
MluNI	TGGCCA	2 cut(s)	77, 871
Mly113I	GGCGCC	1 cut(s)	230
MlyI	GAGTC	2 cut(s)	344, 542
Mox20I	TGGCCA	2 cut(s)	77, 871
MroNI	GCCGGC	1 cut(s)	838
MscI	TGGCCA	2 cut(s)	77, 871
MseI	TTAA	1 cut(s)	554
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	2 cut(s)	77, 871
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	4 cut(s)	114, 327, 435, 839
MspR9I	CCNGG	1 cut(s)	898
MunI	CAATTG	1 cut(s)	575
MvaI	CCWGG	1 cut(s)	898
MwoI	GCNNNNNNNGC	7 cut(s)	74, 260, 310, 521, 596, 832, 868
NaeI	GCCGGC	1 cut(s)	840
NarI	GGCGCC	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	15
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	3 cut(s)	49, 216, 467
NgoMIV	GCCGGC	1 cut(s)	838
NheI	GCTAGC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	19, 398, 467
NlaIV	GGNNCC	3 cut(s)	118, 187, 231
NmeAIII	GCCGAG	1 cut(s)	380
NmuCI	GTSAC	2 cut(s)	346, 580
OliI	CACNNNNGTG	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	901
PciSI	GCTCTTC	1 cut(s)	810
PdiI	GCCGGC	1 cut(s)	840
PfeI	GAWTC	1 cut(s)	603
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	5 cut(s)	265, 306, 406, 517, 837
PleI	GAGTC	2 cut(s)	343, 541
PluTI	GGCGCC	1 cut(s)	233
PpsI	GAGTC	2 cut(s)	343, 541
PpuMI	RGGWCCY	1 cut(s)	185
PsiI	TTATAA	1 cut(s)	650
Psp5II	RGGWCCY	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	896
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	896
PspN4I	GGNNCC	3 cut(s)	118, 187, 231
PspPI	GGNCC	4 cut(s)	154, 174, 185, 437
PspPPI	RGGWCCY	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	309
PsuI	RGATCY	2 cut(s)	216, 467
PvuII	CAGCTG	1 cut(s)	304
RsaI	GTAC	3 cut(s)	542, 573, 750
RsaNI	GTAC	3 cut(s)	541, 572, 749
RseI	CAYNNNNRTG	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	1 cut(s)	554
SatI	GCNGC	5 cut(s)	264, 305, 405, 516, 836
Sau3AI	GATC	3 cut(s)	49, 216, 467
Sau96I	GGNCC	4 cut(s)	154, 174, 185, 437
ScaI	AGTACT	1 cut(s)	750
SchI	GAGTC	2 cut(s)	344, 542
ScrFI	CCNGG	1 cut(s)	898
SduI	GDGCHC	1 cut(s)	503
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	1 cut(s)	305
SfoI	GGCGCC	1 cut(s)	231
SinI	GGWCC	2 cut(s)	154, 185
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	932
SmoI	CTYRAG	1 cut(s)	932
Sse9I	AATT	1 cut(s)	575
SseBI	AGGCCT	1 cut(s)	901
SsiI	CCGC	3 cut(s)	254, 700, 887
SspDI	GGCGCC	1 cut(s)	229
SspI	AATATT	2 cut(s)	238, 528
SspMI	CTAG	1 cut(s)	11
StuI	AGGCCT	1 cut(s)	901
StyD4I	CCNGG	1 cut(s)	896
StyI	CCWWGG	6 cut(s)	15, 78, 388, 616, 654, 717
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	1 cut(s)	894
TaqII	GACCGA	1 cut(s)	940
TasI	AATT	1 cut(s)	575
TatI	WGTACW	3 cut(s)	540, 571, 748
TfiI	GAWTC	1 cut(s)	603
Tru1I	TTAA	1 cut(s)	554
Tru9I	TTAA	1 cut(s)	554
TscAI	CASTG	4 cut(s)	184, 277, 516, 777
TseFI	GTSAC	2 cut(s)	346, 580
TseI	GCWGC	5 cut(s)	263, 304, 404, 515, 835
Tsp45I	GTSAC	2 cut(s)	346, 580
TspDTI	ATGAA	1 cut(s)	579
TspGWI	ACGGA	1 cut(s)	926
TspRI	CASTG	4 cut(s)	184, 277, 516, 777
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	2 cut(s)	154, 185
XspI	CTAG	1 cut(s)	11
ZrmI	AGTACT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.