Rh2CG625300

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002814
Physical Location & Seq
Reverse (-)
79961680 .. 79962736
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG625300.1

Sequence Viewer

Length: 600 bp
ATGTCTAAGCTAGCCATGGATGTTCCTCCTAAGGGTGGGTTTAGCTTTGATCTCTGTAAGCGAAATGCGATGCTGGCCAAGGATGGGTTTCAGCTACCTCCTTTTAGAAAGACCGGAACCACCATTGTGGGTTTGATTTATCAGGATGGCGTGGTCCTCGGAGCAGATACAAGGGCCACTGAAGGACCCATTGTAGCTGATAAGAACTGCGAGAAGATCCATTACTTGGCGCCCAATATTTATTGCTGTGGTGCGGGAACTGCTGCTGACACTGAGGCAGTTACAGATATGGTAAGCGCACAGCTGCAGTTGCACCGTTACCATACCGGCAGGGAGTCAAGGGTTGTGACTGCCCTCACCTATCTCAAAAGACATCTTTTCAGTTACCAAGGTCATGTCTCGGCTGCATTGGTGCTGGGTGGTGTTGATTTCACCGGCCCTCATTTGCACACTATATATCCTCATGGATCTACTGACACACTTCCTTATGCTACTATGGGCTCTGGCTCACTGGCTGCGATGGCAATATTTGAGTCCAAGTACAAGGAGGGGTTAACAGTAAGTGTTTTGAAATCACAGTCTGGAAAAGCTAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome

Protein Analysis

199

Amino Acids

21.27

Weight (kDa)

8.63

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 37 - 187 4.4e-42 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AccB7I CCANNNNNTGG 1 cut(s) 226
AciI CCGC 1 cut(s) 254
AclWI GGATC 2 cut(s) 211, 475
AcoI YGGCCR 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 4 cut(s) 32, 35, 84, 226
AgsI TTSAA 1 cut(s) 571
AleI CACNNNNGTG 1 cut(s) 125
AluBI AGCT 6 cut(s) 10, 45, 94, 197, 304, 590
AluI AGCT 6 cut(s) 10, 45, 94, 197, 304, 590
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 2 cut(s) 211, 475
AoxI GGCC 3 cut(s) 75, 174, 436
ApeKI GCWGC 4 cut(s) 263, 304, 404, 515
AspLEI GCGC 2 cut(s) 232, 299
AspS9I GGNCC 4 cut(s) 154, 174, 185, 437
AsuHPI GGTGA 2 cut(s) 349, 424
AsuNHI GCTAGC 1 cut(s) 10
AvaII GGWCC 2 cut(s) 154, 185
AxyI CCTNAGG 1 cut(s) 30
BalI TGGCCA 1 cut(s) 77
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 503
BarI GAAGNNNNNNTAC 2 cut(s) 206, 238
BbvI GCAGC 4 cut(s) 250, 291, 391, 502
BccI CCATC 3 cut(s) 77, 140, 514
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 2 cut(s) 11, 591
BfmI CTRYAG 1 cut(s) 305
BfoI RGCGCY 1 cut(s) 233
BisI GCNGC 4 cut(s) 264, 305, 405, 516
BlsI GCNGC 4 cut(s) 265, 306, 406, 517
Bme18I GGWCC 2 cut(s) 154, 185
BmgT120I GGNCC 4 cut(s) 154, 174, 185, 437
BmiI GGNNCC 3 cut(s) 118, 187, 231
BmsI GCATC 1 cut(s) 60
BmtI GCTAGC 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 230
BsaJI CCNNGG 4 cut(s) 15, 78, 157, 388
BsaWI WCCGGW 1 cut(s) 113
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 35, 84, 226
Bse118I RCCGGY 2 cut(s) 326, 434
Bse1I ACTGG 1 cut(s) 516
Bse21I CCTNAGG 1 cut(s) 30
BseDI CCNNGG 4 cut(s) 15, 78, 157, 388
BseGI GGATG 3 cut(s) 25, 88, 151
BseLI CCNNNNNNNGG 4 cut(s) 32, 35, 84, 226
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 516
BseXI GCAGC 4 cut(s) 250, 291, 391, 502
BseYI CCCAGC 1 cut(s) 415
BshFI GGCC 3 cut(s) 77, 176, 438
BshNI GGYRCC 1 cut(s) 229
BsiSI CCGG 3 cut(s) 114, 327, 435
BslI CCNNNNNNNGG 4 cut(s) 32, 35, 84, 226
BsmAI GTCTC 1 cut(s) 403
BsnI GGCC 3 cut(s) 77, 176, 438
Bsp1286I GDGCHC 1 cut(s) 503
Bsp143I GATC 3 cut(s) 49, 216, 467
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 1 cut(s) 254
BspANI GGCC 3 cut(s) 77, 176, 438
BspCNI CTCAG 1 cut(s) 265
BspHI TCATGA 1 cut(s) 596
BspLI GGNNCC 3 cut(s) 118, 187, 231
BspMAI CTGCAG 1 cut(s) 309
BspOI GCTAGC 1 cut(s) 14
BspPI GGATC 2 cut(s) 211, 475
BspT107I GGYRCC 1 cut(s) 229
BsrFI RCCGGY 2 cut(s) 326, 434
BsrI ACTGG 1 cut(s) 516
BssAI RCCGGY 2 cut(s) 326, 434
BssECI CCNNGG 4 cut(s) 15, 78, 157, 388
BssMI GATC 3 cut(s) 49, 216, 467
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 3 cut(s) 15, 78, 388
Bst4CI ACNGT 3 cut(s) 317, 559, 579
BstACI GRCGYC 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 12, 75
BstDEI CTNAG 3 cut(s) 6, 30, 273
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 3 cut(s) 25, 88, 151
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 2 cut(s) 232, 299
BstKTI GATC 3 cut(s) 52, 219, 470
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 3 cut(s) 49, 216, 467
BstMWI GCNNNNNNNGC 4 cut(s) 74, 260, 310, 521
BstSFI CTRYAG 1 cut(s) 305
BstV1I GCAGC 4 cut(s) 250, 291, 391, 502
BstX2I RGATCY 2 cut(s) 216, 467
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 2 cut(s) 216, 467
Bsu36I CCTNAGG 1 cut(s) 30
BsuRI GGCC 3 cut(s) 77, 176, 438
BtgI CCRYGG 1 cut(s) 15
BtgZI GCGATG 2 cut(s) 83, 533
BtsCI GGATG 3 cut(s) 25, 88, 151
BtsIMutI CAGTG 3 cut(s) 177, 270, 509
Cac8I GCNNGC 2 cut(s) 12, 75
CciI TCATGA 1 cut(s) 596
CfoI GCGC 2 cut(s) 232, 299
Cfr10I RCCGGY 2 cut(s) 326, 434
Cfr13I GGNCC 4 cut(s) 154, 174, 185, 437
Csp6I GTAC 1 cut(s) 541
CviAII CATG 4 cut(s) 16, 395, 464, 597
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 3 cut(s) 6, 30, 273
DinI GGCGCC 1 cut(s) 231
DpnI GATC 3 cut(s) 51, 218, 469
DpnII GATC 3 cut(s) 49, 216, 467
EaeI YGGCCR 1 cut(s) 75
Eco130I CCWWGG 3 cut(s) 15, 78, 388
Eco24I GRGCYC 1 cut(s) 503
Eco47I GGWCC 2 cut(s) 154, 185
Eco57I CTGAAG 1 cut(s) 201
Eco81I CCTNAGG 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 185
EcoT14I CCWWGG 3 cut(s) 15, 78, 388
EcoT38I GRGCYC 1 cut(s) 503
EgeI GGCGCC 1 cut(s) 231
EheI GGCGCC 1 cut(s) 231
ErhI CCWWGG 3 cut(s) 15, 78, 388
FaeI CATG 4 cut(s) 19, 398, 467, 600
FatI CATG 4 cut(s) 15, 394, 463, 596
FauI CCCGC 1 cut(s) 247
Fnu4HI GCNGC 4 cut(s) 264, 305, 405, 516
FokI GGATG 3 cut(s) 32, 95, 158
FriOI GRGCYC 1 cut(s) 503
Fsp4HI GCNGC 4 cut(s) 264, 305, 405, 516
FspBI CTAG 2 cut(s) 11, 591
GlaI GCGC 2 cut(s) 231, 298
GluI GCNGC 4 cut(s) 264, 305, 405, 516
GsaI CCCAGC 1 cut(s) 419
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 3 cut(s) 77, 176, 438
HapII CCGG 3 cut(s) 114, 327, 435
HhaI GCGC 2 cut(s) 232, 299
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 4 cut(s) 19, 398, 467, 600
Hin6I GCGC 2 cut(s) 230, 297
HinP1I GCGC 2 cut(s) 230, 297
HincII GTYRAC 1 cut(s) 555
HindII GTYRAC 1 cut(s) 555
HinfI GANTC 2 cut(s) 335, 533
HpaI GTTAAC 1 cut(s) 555
HpaII CCGG 3 cut(s) 114, 327, 435
HphI GGTGA 2 cut(s) 349, 424
Hpy166II GTNNAC 1 cut(s) 555
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 3 cut(s) 143, 582, 597
Hpy8I GTNNAC 1 cut(s) 555
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 3 cut(s) 317, 559, 579
HpyCH4V TGCA 4 cut(s) 307, 313, 407, 448
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 260, 310, 521
HpyF3I CTNAG 3 cut(s) 6, 30, 273
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 4 cut(s) 19, 398, 467, 600
HspAI GCGC 2 cut(s) 230, 297
KasI GGCGCC 1 cut(s) 229
KspAI GTTAAC 1 cut(s) 555
Kzo9I GATC 3 cut(s) 49, 216, 467
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 4 cut(s) 250, 291, 391, 502
LweI GCATC 1 cut(s) 60
MaeI CTAG 2 cut(s) 11, 591
MaeIII GTNAC 4 cut(s) 280, 317, 346, 383
MalI GATC 3 cut(s) 51, 218, 469
MboI GATC 3 cut(s) 49, 216, 467
MboII GAAGA 1 cut(s) 226
MflI RGATCY 2 cut(s) 216, 467
MhlI GDGCHC 1 cut(s) 503
MlsI TGGCCA 1 cut(s) 77
MluNI TGGCCA 1 cut(s) 77
Mly113I GGCGCC 1 cut(s) 230
MlyI GAGTC 2 cut(s) 344, 542
MnlI CCTC 8 cut(s) 36, 108, 167, 268, 365, 450, 471, 541
Mox20I TGGCCA 1 cut(s) 77
MscI TGGCCA 1 cut(s) 77
MseI TTAA 1 cut(s) 554
MslI CAYNNNNRTG 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 3 cut(s) 114, 327, 435
MwoI GCNNNNNNNGC 4 cut(s) 74, 260, 310, 521
NarI GGCGCC 1 cut(s) 230
NcoI CCATGG 1 cut(s) 15
NdeII GATC 3 cut(s) 49, 216, 467
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 4 cut(s) 19, 398, 467, 600
NlaIV GGNNCC 3 cut(s) 118, 187, 231
NmeAIII GCCGAG 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 346
OliI CACNNNNGTG 1 cut(s) 125
PagI TCATGA 1 cut(s) 596
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 4 cut(s) 265, 306, 406, 517
PleI GAGTC 2 cut(s) 343, 541
PluTI GGCGCC 1 cut(s) 233
PpsI GAGTC 2 cut(s) 343, 541
PpuMI RGGWCCY 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 415
PspN4I GGNNCC 3 cut(s) 118, 187, 231
PspPI GGNCC 4 cut(s) 154, 174, 185, 437
PspPPI RGGWCCY 1 cut(s) 185
PstI CTGCAG 1 cut(s) 309
PsuI RGATCY 2 cut(s) 216, 467
PvuII CAGCTG 1 cut(s) 304
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 554
SatI GCNGC 4 cut(s) 264, 305, 405, 516
Sau3AI GATC 3 cut(s) 49, 216, 467
Sau96I GGNCC 4 cut(s) 154, 174, 185, 437
SchI GAGTC 2 cut(s) 344, 542
SduI GDGCHC 1 cut(s) 503
SetI ASST 9 cut(s) 12, 47, 96, 100, 199, 306, 362, 394, 592
SfaNI GCATC 1 cut(s) 60
SfcI CTRYAG 1 cut(s) 305
SfoI GGCGCC 1 cut(s) 231
SinI GGWCC 2 cut(s) 154, 185
SmiMI CAYNNNNRTG 1 cut(s) 125
SsiI CCGC 1 cut(s) 254
SspDI GGCGCC 1 cut(s) 229
SspI AATATT 2 cut(s) 238, 528
SspMI CTAG 2 cut(s) 11, 591
StyI CCWWGG 3 cut(s) 15, 78, 388
TaaI ACNGT 3 cut(s) 317, 559, 579
TatI WGTACW 1 cut(s) 540
Tru1I TTAA 1 cut(s) 554
Tru9I TTAA 1 cut(s) 554
TscAI CASTG 3 cut(s) 184, 277, 516
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 4 cut(s) 263, 304, 404, 515
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 585
TspRI CASTG 3 cut(s) 184, 277, 516
Van91I CCANNNNNTGG 1 cut(s) 226
VpaK11BI GGWCC 2 cut(s) 154, 185
XspI CTAG 2 cut(s) 11, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.