Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002814

Physical Location & Seq

Genomic Coordinates Reverse (-)

26303483 .. 26306939

Gene Structure 3457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G295500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTCTCAGGCGGCGATAGATGTTCCCAAGGGTGGATTTAGTTTTGATCTTTGTCGAAGAAACGACATGCTTGCAAAGAAGGGGGTTCAGCAACCATCTTATAGGAAGACGGGAACCACCATCGTCGGTTTGATTTTTCAGGATGGTGTCATTCTTGGAGCTGATACCAGGGCCACCGAAGGACCCATTGTTTGTGATAAGAATTGTGAAAAGATCCATTATATGGCACCCAATATTTATTGCTGTGGAGCTGGAACTGCTGCTGATACGGAGGCTGTTACAGACATGGTCAGCTCACAGCTGCAACTGCATCGGTACCATACTGGTCGTGAATCACGGGTTGTTACAGCCTTGACCTTGCTCAAGAAACACCTTTTTAGTTACCAAGGTCATGTGTCGGCTGCTTTGGTGCTTGGGGGTGTTGATGTCACTGGACCCCATCTACATACTATATATCCCCATGGATCAACTGACACACTGCCATTTGCTACAATGGGCTCTGGTTCTCTTGCTGCGATGTCCATATTTGAGTCTAAGTACAAAGAAGGCCTCACTAGGGATGAAGGCATAAAGCTCGTAACCGAAGCAATATGCTCTGGCATTTTTAATGACTTGGGAAGTGGAAGCAACGTTGATGTTTGTGTAATAACTAAGGGACACAAGGAATACCTGAGGAACCACTTGTCGCCCACACCTCGTACTTATGTCAGTGCGAAAGACTATACATTCTCCAAGAAAACTGAGGTTCTCTTAACGAAGATCATTCCATTGACCGAGAAGGTGGAAGTGATAGAAGCAGGCGATGCAATGGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

273

Amino Acids

29.45

Weight (kDa)

6.55

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27430 AT3G27430 AT3G27430 AT5G40580 AT5G40580 AT5G40580 AT5G40580
fragaria_vesca	FvH4_6g52030 FvH4_6g52030
malus_domestica	MD09G1020800.v1.1
prunus_persica	Prupe.3G295500_v2.0.a1 Prupe.3G295500_v2.0.a1
pyrus_communis	pycom111g01750 pycom17g01770
rosa_chinensis	RchiOBHm_Chr2g0173491 RchiOBHm_Chr2g0173541 RchiOBHm_Chr3g0468681
rosa_laevigata	RLG00000022199
rosa_multiflora	Rmu_sc0002538.1_g000026 Rmu_sc0011538.1_g000006 Rmu_sc0025203.1_g000001 Rmu_sc0033138.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078800 Rroxscaffold_2G00078810 Rroxscaffold_6G00412650
rosa_rugosa	Rorug02G0571200
rosa_samantha	Rh2AG649400 Rh2AG649900 Rh2BG660000 Rh2BG660300 Rh2CG625300 Rh2DG675100 Rh2DG675700 Rh3AG145100 Rh3BG167600 Rh3DG166400
rosa_wichuraiana	Rw2G053320 Rw2G053340 Rw3G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	315
AccB1I	GGYRCC	2 cut(s)	226, 315
AccB7I	CCANNNNNTGG	1 cut(s)	223
AciI	CCGC	1 cut(s)	11
AclI	AACGTT	1 cut(s)	630
AclWI	GGATC	2 cut(s)	208, 472
AfaI	GTAC	3 cut(s)	317, 539, 700
AfiI	CCNNNNNNNGG	3 cut(s)	32, 223, 556
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	5 cut(s)	161, 251, 294, 301, 574
AluI	AGCT	5 cut(s)	161, 251, 294, 301, 574
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	208, 472
AoxI	GGCC	2 cut(s)	171, 547
ApeKI	GCWGC	4 cut(s)	260, 301, 401, 512
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
Asp718I	GGTACC	1 cut(s)	315
AspS9I	GGNCC	3 cut(s)	171, 182, 434
AvaII	GGWCC	2 cut(s)	182, 434
AxyI	CCTNAGG	1 cut(s)	671
BanI	GGYRCC	2 cut(s)	226, 315
BanII	GRGCYC	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	4 cut(s)	247, 288, 388, 499
BccI	CCATC	4 cut(s)	103, 128, 137, 447
BcgI	CGANNNNNNTGC	6 cut(s)	53, 87, 293, 327, 556, 590
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	555
BisI	GCNGC	5 cut(s)	12, 261, 302, 402, 513
BlsI	GCNGC	5 cut(s)	13, 262, 303, 403, 514
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	2 cut(s)	182, 434
BmgT120I	GGNCC	3 cut(s)	171, 182, 434
BmiI	GGNNCC	6 cut(s)	115, 184, 228, 317, 436, 677
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	319, 793
BpiI	GAAGAC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	347
BsaJI	CCNNGG	4 cut(s)	27, 168, 385, 460
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 223, 556
Bse1I	ACTGG	2 cut(s)	328, 436
Bse21I	CCTNAGG	1 cut(s)	671
Bse3DI	GCAATG	1 cut(s)	813
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	4 cut(s)	27, 168, 385, 460
BseGI	GGATG	2 cut(s)	148, 565
BseLI	CCNNNNNNNGG	3 cut(s)	32, 223, 556
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	3 cut(s)	20, 662, 732
BseNI	ACTGG	2 cut(s)	328, 436
BseXI	GCAGC	4 cut(s)	247, 288, 388, 499
BshFI	GGCC	2 cut(s)	173, 549
BshNI	GGYRCC	2 cut(s)	226, 315
BslFI	GGGAC	1 cut(s)	669
BslI	CCNNNNNNNGG	3 cut(s)	32, 223, 556
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	669
BsnI	GGCC	2 cut(s)	173, 549
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp143I	GATC	4 cut(s)	46, 213, 464, 759
Bsp19I	CCATGG	1 cut(s)	460
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	2 cut(s)	173, 549
BspCNI	CTCAG	3 cut(s)	19, 663, 733
BspLI	GGNNCC	6 cut(s)	115, 184, 228, 317, 436, 677
BspPI	GGATC	2 cut(s)	208, 472
BspT107I	GGYRCC	2 cut(s)	226, 315
BsrDI	GCAATG	1 cut(s)	813
BsrI	ACTGG	2 cut(s)	328, 436
BssECI	CCNNGG	4 cut(s)	27, 168, 385, 460
BssMI	GATC	4 cut(s)	46, 213, 464, 759
BssT1I	CCWWGG	3 cut(s)	27, 385, 460
Bst2UI	CCWGG	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	807
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstC8I	GCNNGC	2 cut(s)	72, 799
BstDEI	CTNAG	5 cut(s)	6, 534, 651, 671, 741
BstDSI	CCRYGG	1 cut(s)	460
BstF5I	GGATG	2 cut(s)	148, 565
BstKTI	GATC	4 cut(s)	49, 216, 467, 762
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	46, 213, 464, 759
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 307, 803
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	167
BstV1I	GCAGC	4 cut(s)	247, 288, 388, 499
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	173, 549
BtgI	CCRYGG	1 cut(s)	460
BtgZI	GCGATG	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	148, 565
BtsI	GCAGTG	1 cut(s)	476
BtsIMutI	CAGTG	3 cut(s)	429, 476, 715
Cac8I	GCNNGC	2 cut(s)	72, 799
Cfr13I	GGNCC	3 cut(s)	171, 182, 434
Csp6I	GTAC	3 cut(s)	316, 538, 699
CviAII	CATG	4 cut(s)	67, 286, 392, 461
CviQI	GTAC	3 cut(s)	316, 538, 699
DdeI	CTNAG	5 cut(s)	6, 534, 651, 671, 741
DpnI	GATC	4 cut(s)	48, 215, 466, 761
DpnII	GATC	4 cut(s)	46, 213, 464, 759
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Eco130I	CCWWGG	3 cut(s)	27, 385, 460
Eco147I	AGGCCT	1 cut(s)	549
Eco24I	GRGCYC	1 cut(s)	500
Eco47I	GGWCC	2 cut(s)	182, 434
Eco81I	CCTNAGG	1 cut(s)	671
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	3 cut(s)	27, 385, 460
EcoT38I	GRGCYC	1 cut(s)	500
ErhI	CCWWGG	3 cut(s)	27, 385, 460
FaeI	CATG	4 cut(s)	70, 289, 395, 464
FaqI	GGGAC	1 cut(s)	669
FatI	CATG	4 cut(s)	66, 285, 391, 460
Fnu4HI	GCNGC	5 cut(s)	12, 261, 302, 402, 513
FokI	GGATG	2 cut(s)	155, 572
FriOI	GRGCYC	1 cut(s)	500
Fsp4HI	GCNGC	5 cut(s)	12, 261, 302, 402, 513
FspBI	CTAG	1 cut(s)	555
GluI	GCNGC	5 cut(s)	12, 261, 302, 402, 513
HaeIII	GGCC	2 cut(s)	173, 549
Hin1II	CATG	4 cut(s)	70, 289, 395, 464
HinfI	GANTC	2 cut(s)	332, 530
Hpy188III	TCNNGA	3 cut(s)	140, 329, 364
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	5 cut(s)	73, 173, 539, 557, 772
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	4 cut(s)	74, 304, 310, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 307, 803
HpyF3I	CTNAG	5 cut(s)	6, 534, 651, 671, 741
HpySE526I	ACGT	1 cut(s)	630
Hsp92II	CATG	4 cut(s)	70, 289, 395, 464
KpnI	GGTACC	1 cut(s)	319
Kzo9I	GATC	4 cut(s)	46, 213, 464, 759
LmnI	GCTCC	2 cut(s)	158, 248
Lsp1109I	GCAGC	4 cut(s)	247, 288, 388, 499
LweI	GCATC	2 cut(s)	319, 793
MaeI	CTAG	1 cut(s)	555
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	5 cut(s)	277, 343, 380, 427, 577
MalI	GATC	4 cut(s)	48, 215, 466, 761
MboI	GATC	4 cut(s)	46, 213, 464, 759
MboII	GAAGA	3 cut(s)	69, 118, 769
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	500
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	539
MnlI	CCTC	5 cut(s)	265, 560, 666, 705, 736
MseI	TTAA	2 cut(s)	606, 752
MspA1I	CMGCKG	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	257, 307, 803
NcoI	CCATGG	1 cut(s)	460
NdeII	GATC	4 cut(s)	46, 213, 464, 759
NlaIII	CATG	4 cut(s)	70, 289, 395, 464
NlaIV	GGNNCC	6 cut(s)	115, 184, 228, 317, 436, 677
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	70
PceI	AGGCCT	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	332
PflFI	GACNNNGTC	1 cut(s)	287
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	5 cut(s)	13, 262, 303, 403, 514
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
PpuMI	RGGWCCY	1 cut(s)	182
Psp1406I	AACGTT	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	6 cut(s)	115, 184, 228, 317, 436, 677
PspPI	GGNCC	3 cut(s)	171, 182, 434
PspPPI	RGGWCCY	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	213
PsyI	GACNNNGTC	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	301
RsaI	GTAC	3 cut(s)	317, 539, 700
RsaNI	GTAC	3 cut(s)	316, 538, 699
SaqAI	TTAA	2 cut(s)	606, 752
SatI	GCNGC	5 cut(s)	12, 261, 302, 402, 513
Sau3AI	GATC	4 cut(s)	46, 213, 464, 759
Sau96I	GGNCC	3 cut(s)	171, 182, 434
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	500
SfaNI	GCATC	2 cut(s)	319, 793
SinI	GGWCC	2 cut(s)	182, 434
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	1 cut(s)	202
SseBI	AGGCCT	1 cut(s)	549
SsiI	CCGC	1 cut(s)	11
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	1 cut(s)	555
StuI	AGGCCT	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	3 cut(s)	27, 385, 460
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	1 cut(s)	55
TaqII	GACCGA	1 cut(s)	788
TasI	AATT	1 cut(s)	202
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	2 cut(s)	606, 752
Tru9I	TTAA	2 cut(s)	606, 752
TscAI	CASTG	3 cut(s)	436, 483, 715
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	4 cut(s)	260, 301, 401, 512
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	576
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	3 cut(s)	436, 483, 715
Tth111I	GACNNNGTC	1 cut(s)	287
Van91I	CCANNNNNTGG	1 cut(s)	223
VpaK11BI	GGWCC	2 cut(s)	182, 434
XceI	RCATGY	1 cut(s)	70
XspI	CTAG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.