Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025203.1

Orthogroup ID

OG0002814

Physical Location & Seq

Genomic Coordinates Reverse (-)

1604 .. 3450

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025203.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atggctaaatcaatcattgatgttcctcccaagggtggatttagctttgatctatgtaaaagaaatgctatgctttcgaagaatgcggttcagctacctccgtttaccaagacaggaaccaccattgttgggttaatttttcaggatggtgtcattcttggagctgataccagggccacctcagggtcaattgtgtgtgataaaaactgtgagaaaattcattacatggcaccaaacatatattgctgtggggcaggaactgctgctgatactgaggcagtgacagacatggtcagctcacagctgcaattgcaccgttaccacactggtagggaatcaagggttgtgactgccctcacctatctcaaaagacatcttttcagttaccaaggtcatgtctcggctgcattggtgcttggaggtgttgatttcaccggccctcatttgcacactatttatccacatgggtcgactgacacactcccttatgctactatgggttccggctcacttgctgcaatggccatcttcgagtccaagtacaaagaaggcctgactagagatgaaggggtacagcttgttacagaggctatttgctctggtatattcaatgatttgggaagtggtagcaatgtcgatatctgtgtaataaccaagggcaacaaagaattcctgcggaaccatttgcagcctaatcctcgaacctatgtcagccccaaagaatactcattcaccaagaagaccgaggttctgttaaccaagataacaccattgaaggagaaggtagaagttatagaagtaggaggagacgccatggaagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

274

Amino Acids

29.68

Weight (kDa)

6.75

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27430 AT3G27430 AT3G27430 AT5G40580 AT5G40580 AT5G40580 AT5G40580
fragaria_vesca	FvH4_6g52030 FvH4_6g52030
malus_domestica	MD09G1020800.v1.1
prunus_persica	Prupe.3G295500_v2.0.a1 Prupe.3G295500_v2.0.a1
pyrus_communis	pycom111g01750 pycom17g01770
rosa_chinensis	RchiOBHm_Chr2g0173491 RchiOBHm_Chr2g0173541 RchiOBHm_Chr3g0468681
rosa_laevigata	RLG00000022199
rosa_multiflora	Rmu_sc0002538.1_g000026 Rmu_sc0011538.1_g000006 Rmu_sc0025203.1_g000001 Rmu_sc0033138.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078800 Rroxscaffold_2G00078810 Rroxscaffold_6G00412650
rosa_rugosa	Rorug02G0571200
rosa_samantha	Rh2AG649400 Rh2AG649900 Rh2BG660000 Rh2BG660300 Rh2CG625300 Rh2DG675100 Rh2DG675700 Rh3AG145100 Rh3BG167600 Rh3DG166400
rosa_wichuraiana	Rw2G053320 Rw2G053340 Rw3G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	470
AciI	CCGC	2 cut(s)	86, 676
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	2 cut(s)	216, 668
AcyI	GRCGYC	1 cut(s)	810
AfaI	GTAC	2 cut(s)	542, 573
AfiI	CCNNNNNNNGG	4 cut(s)	32, 35, 129, 183
AgsI	TTSAA	2 cut(s)	610, 775
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	6 cut(s)	45, 94, 164, 297, 304, 577
AluI	AGCT	6 cut(s)	45, 94, 164, 297, 304, 577
Alw26I	GTCTC	2 cut(s)	403, 801
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	4 cut(s)	174, 436, 522, 550
ApeKI	GCWGC	5 cut(s)	263, 304, 404, 515, 688
ApoI	RAATTY	2 cut(s)	216, 668
AspS9I	GGNCC	2 cut(s)	174, 437
AsuHPI	GGTGA	3 cut(s)	349, 424, 724
AsuII	TTCGAA	1 cut(s)	77
AxyI	CCTNAGG	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	746
BbvI	GCAGC	5 cut(s)	250, 291, 391, 502, 700
BccI	CCATC	2 cut(s)	140, 533
BciT130I	CCWGG	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	403, 801
BfaI	CTAG	1 cut(s)	558
BisI	GCNGC	5 cut(s)	264, 305, 405, 516, 689
BlsI	GCNGC	5 cut(s)	265, 306, 406, 517, 690
Bme1390I	CCNGG	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	174, 437
BmiI	GGNNCC	4 cut(s)	118, 231, 502, 680
BmrFI	CCNGG	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	746
Bpu14I	TTCGAA	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	810
BsaJI	CCNNGG	6 cut(s)	30, 171, 388, 654, 744, 813
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 35, 129, 183
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	331
Bse21I	CCTNAGG	1 cut(s)	181
Bse3DI	GCAATG	2 cut(s)	525, 637
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	6 cut(s)	30, 171, 388, 654, 744, 813
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	4 cut(s)	32, 35, 129, 183
BseMI	GCAATG	2 cut(s)	525, 637
BseMII	CTCAG	2 cut(s)	195, 264
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	819
BseXI	GCAGC	5 cut(s)	250, 291, 391, 502, 700
BshFI	GGCC	4 cut(s)	176, 438, 524, 552
BshNI	GGYRCC	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	435, 504
BslI	CCNNNNNNNGG	4 cut(s)	32, 35, 129, 183
BsmAI	GTCTC	2 cut(s)	403, 801
BsmBI	CGTCTC	1 cut(s)	801
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	4 cut(s)	176, 438, 524, 552
Bsp119I	TTCGAA	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	49
Bsp19I	CCATGG	1 cut(s)	813
BspACI	CCGC	2 cut(s)	86, 676
BspANI	GGCC	4 cut(s)	176, 438, 524, 552
BspCNI	CTCAG	2 cut(s)	194, 265
BspLI	GGNNCC	4 cut(s)	118, 231, 502, 680
BspT104I	TTCGAA	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	2 cut(s)	525, 637
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	331
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	6 cut(s)	30, 171, 388, 654, 744, 813
BssMI	GATC	1 cut(s)	49
BssNI	GRCGYC	1 cut(s)	810
BssT1I	CCWWGG	4 cut(s)	30, 388, 654, 813
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	209, 317
BstACI	GRCGYC	1 cut(s)	810
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	77
BstDEI	CTNAG	2 cut(s)	181, 273
BstDSI	CCRYGG	1 cut(s)	813
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	2 cut(s)	403, 801
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 310, 521
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	170
BstV1I	GCAGC	5 cut(s)	250, 291, 391, 502, 700
BstV2I	GAAGAC	1 cut(s)	746
Bsu36I	CCTNAGG	1 cut(s)	181
BsuRI	GGCC	4 cut(s)	176, 438, 524, 552
BtgI	CCRYGG	1 cut(s)	813
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	285, 324
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	174, 437
CseI	GACGC	1 cut(s)	818
Csp6I	GTAC	2 cut(s)	541, 572
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	5 cut(s)	226, 289, 395, 464, 814
CviQI	GTAC	2 cut(s)	541, 572
DdeI	CTNAG	2 cut(s)	181, 273
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	522
Eco130I	CCWWGG	4 cut(s)	30, 388, 654, 813
Eco147I	AGGCCT	1 cut(s)	552
Eco32I	GATATC	1 cut(s)	640
Eco81I	CCTNAGG	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	640
EcoT14I	CCWWGG	4 cut(s)	30, 388, 654, 813
ErhI	CCWWGG	4 cut(s)	30, 388, 654, 813
Esp3I	CGTCTC	1 cut(s)	801
FaeI	CATG	5 cut(s)	229, 292, 398, 467, 817
FatI	CATG	5 cut(s)	225, 288, 394, 463, 813
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	5 cut(s)	264, 305, 405, 516, 689
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	5 cut(s)	264, 305, 405, 516, 689
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	5 cut(s)	264, 305, 405, 516, 689
HaeIII	GGCC	4 cut(s)	176, 438, 524, 552
HapII	CCGG	2 cut(s)	435, 504
HgaI	GACGC	1 cut(s)	818
Hin1I	GRCGYC	1 cut(s)	810
Hin1II	CATG	5 cut(s)	229, 292, 398, 467, 817
HincII	GTYRAC	2 cut(s)	471, 756
HindII	GTYRAC	2 cut(s)	471, 756
HinfI	GANTC	2 cut(s)	335, 533
HpaI	GTTAAC	1 cut(s)	756
HpaII	CCGG	2 cut(s)	435, 504
HphI	GGTGA	3 cut(s)	349, 424, 724
Hpy166II	GTNNAC	3 cut(s)	105, 471, 756
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	3 cut(s)	105, 471, 756
HpyAV	CCTTC	4 cut(s)	542, 560, 769, 775
HpyCH4III	ACNGT	2 cut(s)	209, 317
HpyCH4V	TGCA	6 cut(s)	307, 313, 407, 448, 518, 688
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 310, 521
HpyF3I	CTNAG	2 cut(s)	181, 273
Hsp92I	GRCGYC	1 cut(s)	810
Hsp92II	CATG	5 cut(s)	229, 292, 398, 467, 817
KspAI	GTTAAC	1 cut(s)	756
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	5 cut(s)	250, 291, 391, 502, 700
MaeI	CTAG	1 cut(s)	558
MaeIII	GTNAC	5 cut(s)	280, 317, 346, 383, 580
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	3 cut(s)	91, 520, 751
MfeI	CAATTG	2 cut(s)	189, 308
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	5 cut(s)	135, 189, 216, 308, 668
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	1 cut(s)	542
Mox20I	TGGCCA	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	2 cut(s)	134, 755
Msp20I	TGGCCA	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	2 cut(s)	435, 504
MspR9I	CCNGG	1 cut(s)	172
MunI	CAATTG	2 cut(s)	189, 308
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	3 cut(s)	260, 310, 521
NcoI	CCATGG	1 cut(s)	813
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	5 cut(s)	229, 292, 398, 467, 817
NlaIV	GGNNCC	4 cut(s)	118, 231, 502, 680
NmeAIII	GCCGAG	1 cut(s)	380
NmuCI	GTSAC	2 cut(s)	280, 346
NspV	TTCGAA	1 cut(s)	77
PceI	AGGCCT	1 cut(s)	552
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	335
PflFI	GACNNNGTC	1 cut(s)	290
PkrI	GCNGC	5 cut(s)	265, 306, 406, 517, 690
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	4 cut(s)	118, 231, 502, 680
PspPI	GGNCC	2 cut(s)	174, 437
PstNI	CAGNNNCTG	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	304
RsaI	GTAC	2 cut(s)	542, 573
RsaNI	GTAC	2 cut(s)	541, 572
SalI	GTCGAC	1 cut(s)	469
SaqAI	TTAA	2 cut(s)	134, 755
SatI	GCNGC	5 cut(s)	264, 305, 405, 516, 689
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	2 cut(s)	174, 437
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	77
Sse9I	AATT	5 cut(s)	135, 189, 216, 308, 668
SseBI	AGGCCT	1 cut(s)	552
SsiI	CCGC	2 cut(s)	86, 676
SspMI	CTAG	1 cut(s)	558
StuI	AGGCCT	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	4 cut(s)	30, 388, 654, 813
TaaI	ACNGT	2 cut(s)	209, 317
TaqI	TCGA	5 cut(s)	77, 470, 531, 636, 700
TaqII	GACCGA	1 cut(s)	758
TasI	AATT	5 cut(s)	135, 189, 216, 308, 668
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	134, 755
Tru9I	TTAA	2 cut(s)	134, 755
TscAI	CASTG	2 cut(s)	285, 331
TseFI	GTSAC	2 cut(s)	280, 346
TseI	GCWGC	5 cut(s)	263, 304, 404, 515, 688
Tsp45I	GTSAC	2 cut(s)	280, 346
TspDTI	ATGAA	2 cut(s)	209, 579
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	2 cut(s)	285, 331
Tth111I	GACNNNGTC	1 cut(s)	290
XapI	RAATTY	2 cut(s)	216, 668
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.