FvH4_7g01730

Protein BPS1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015679
Physical Location & Seq
Reverse (-)
2086404 .. 2087354
951 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01730.t1

Sequence Viewer

Length: 951 bp
ATGGTTCTCTTGTTACAAAAGATTGACAAGCTCTACTCAAAGCTGGAGAATTACCACCATCACAATCACAACCACCAATCACAAGCCTTGTCATCTTCTCTGGAGGCTTTTCAAACCCTTGTTTCCAGTTCGCTTAACAGATTGTTTTCGAGTTCAAAATCAGCAGAATCCGAAGTTCCATCATTTCCATGGATTCAGCAGTGTTTTGAGCTCATACCCATCATCAACAATGGTTTTGCAAAGCTAGTTGTGGCCATAGACTATCCCATGACTAAATGGGAAGCTGACTCTGTGGAAGAGTATCTACAATTCACCTTGAAGTTGCTAGAGTTGTGCAATTCCATCACTTGCTCTCTTTCTCATCTTGGGAAAGAGAGGATGTCACTGTCTCATGGTTTGAGCCTTGTGGAGAGTTCATCACCTTCTTTGGCTGTGGAGCGTCTGAGACAAATACAAGTCCAACCAAAGAGTTTGAGCAAGGATTTCAGATTCGAGGGAAATGAAGAACATGGGAAAGAACGGTTTTCAATTACCAAGAGATCAGTTTTTCATCAGGCTTTGGTGGTTATGGAGGGGATGGTGTTTTGGCTATGTGGGATTTTGATGACTGGTATAGTTGGGGATTCCAAGCCATACTTGGAGATGAGAAAATCTGGTGGAAGGTTAGTAAGTTCATTGATTTCTGGACTGGATTTGAGTGTGGGTGAAGTAATTGTTGAGAATAAAGGTATGTTGAAAGAGGTGATAGAGATCAATGACTCAGTTGCAGCCCTTGTTTCTGCTGTTGGGATTGGGCAAAAGAGTAAAACAGAAGCTGATGAACTACAAAGACGATTAGAGGTGTTTGAAAGATTGGTGGAGGATTTGGGAAAAGAGGTGGATTGTGTTTTCAATAATGTTTTGGCTGGAAGAAATCAACTGCTCAATGGATTTCAACACCAAAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1 DUF241

Protein Analysis

317

Amino Acids

35.47

Weight (kDa)

6.09

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 96 - 309 5.9e-06 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01730
malus_domestica MD02G1301300.v1.1 MD07G1022600.v1.1 MD07G1022700.v1.1
prunus_persica Prupe.2G023200_v2.0.a1
pyrus_communis pycom02g25310 pycom07g01710 pycom07g01720
rosa_chinensis RchiOBHm_Chr1g0318291
rosa_laevigata RLG00000030548
rosa_multiflora Rmu_ssc0000308.1_g000005
rosa_roxburghii Rroxscaffold_4G00329450
rosa_rugosa Rorug01G0019900
rosa_samantha Rh1AG032100 Rh1BG027600 Rh1DG039400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 252
AgsI TTSAA 8 cut(s) 113, 156, 319, 528, 736, 848, 892, 935
AluBI AGCT 6 cut(s) 31, 43, 211, 244, 284, 815
AluI AGCT 6 cut(s) 31, 43, 211, 244, 284, 815
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 2 cut(s) 393, 439
AlwNI CAGNNNCTG 1 cut(s) 815
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 767
AsuHPI GGTGA 4 cut(s) 304, 411, 716, 754
BalI TGGCCA 1 cut(s) 254
BanII GRGCYC 1 cut(s) 213
BarI GAAGNNNNNNTAC 2 cut(s) 288, 320
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 779
BccI CCATC 5 cut(s) 66, 187, 227, 350, 571
BcoDI GTCTC 2 cut(s) 393, 439
BfaI CTAG 2 cut(s) 245, 326
BisI GCNGC 1 cut(s) 768
BlsI GCNGC 1 cut(s) 769
BpmI CTGGAG 2 cut(s) 65, 122
BsaBI GATNNNNATC 1 cut(s) 749
BsaJI CCNNGG 1 cut(s) 188
Bse1I ACTGG 3 cut(s) 126, 613, 693
Bse8I GATNNNNATC 1 cut(s) 749
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 2 cut(s) 384, 582
BseJI GATNNNNATC 1 cut(s) 749
BseMII CTCAG 2 cut(s) 434, 774
BseNI ACTGG 3 cut(s) 126, 613, 693
BseXI GCAGC 1 cut(s) 779
BshFI GGCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 213
BsmAI GTCTC 2 cut(s) 393, 439
BsnI GGCC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 2 cut(s) 539, 750
Bsp19I CCATGG 1 cut(s) 188
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 2 cut(s) 435, 773
BsrI ACTGG 3 cut(s) 126, 613, 693
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 2 cut(s) 539, 750
BssT1I CCWWGG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 387, 522
Bst6I CTCTTC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 443, 760
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 2 cut(s) 384, 582
BstKTI GATC 2 cut(s) 542, 753
BstMAI GTCTC 2 cut(s) 393, 439
BstMBI GATC 2 cut(s) 539, 750
BstV1I GCAGC 1 cut(s) 779
BsuRI GGCC 1 cut(s) 254
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 2 cut(s) 384, 582
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 2 cut(s) 206, 383
CaiI CAGNNNCTG 1 cut(s) 815
CseI GACGC 1 cut(s) 428
CviAII CATG 4 cut(s) 189, 268, 392, 509
DdeI CTNAG 2 cut(s) 443, 760
DpnI GATC 2 cut(s) 541, 752
DpnII GATC 2 cut(s) 539, 750
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 4 cut(s) 192, 271, 395, 512
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FatI CATG 4 cut(s) 188, 267, 391, 508
Fnu4HI GCNGC 1 cut(s) 768
FokI GGATG 2 cut(s) 391, 589
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 768
FspBI CTAG 2 cut(s) 245, 326
GluI GCNGC 1 cut(s) 768
GsuI CTGGAG 2 cut(s) 65, 122
HaeIII GGCC 1 cut(s) 254
HgaI GACGC 1 cut(s) 428
Hin1II CATG 4 cut(s) 192, 271, 395, 512
HinfI GANTC 6 cut(s) 167, 193, 287, 489, 623, 758
HphI GGTGA 4 cut(s) 304, 411, 716, 754
Hpy188I TCNGA 3 cut(s) 172, 444, 488
Hpy188III TCNNGA 2 cut(s) 101, 684
HpyAV CCTTC 2 cut(s) 432, 654
HpyCH4III ACNGT 2 cut(s) 387, 522
HpyCH4V TGCA 3 cut(s) 239, 336, 767
HpyF3I CTNAG 2 cut(s) 443, 760
Hsp92II CATG 4 cut(s) 192, 271, 395, 512
Kzo9I GATC 2 cut(s) 539, 750
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 9 cut(s) 29, 86, 139, 539, 594, 639, 669, 674, 891
Lsp1109I GCAGC 1 cut(s) 779
MaeI CTAG 2 cut(s) 245, 326
MaeIII GTNAC 2 cut(s) 12, 381
MalI GATC 2 cut(s) 541, 752
MboI GATC 2 cut(s) 539, 750
MboII GAAGA 4 cut(s) 87, 308, 515, 921
MhlI GDGCHC 1 cut(s) 213
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 5 cut(s) 49, 308, 337, 528, 711
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 2 cut(s) 281, 752
MmeI TCCRAC 1 cut(s) 484
MnlI CCTC 8 cut(s) 97, 369, 487, 565, 733, 832, 853, 868
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 187
Msp20I TGGCCA 1 cut(s) 254
NcoI CCATGG 1 cut(s) 188
NdeII GATC 2 cut(s) 539, 750
NlaIII CATG 4 cut(s) 192, 271, 395, 512
NmuCI GTSAC 1 cut(s) 381
PfeI GAWTC 4 cut(s) 167, 193, 489, 623
PkrI GCNGC 1 cut(s) 769
PleI GAGTC 2 cut(s) 281, 752
PpsI GAGTC 2 cut(s) 281, 752
Psp124BI GAGCTC 1 cut(s) 213
PstNI CAGNNNCTG 1 cut(s) 815
RseI CAYNNNNRTG 1 cut(s) 187
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 768
Sau3AI GATC 2 cut(s) 539, 750
SchI GAGTC 2 cut(s) 281, 752
SduI GDGCHC 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 187
Sse9I AATT 5 cut(s) 49, 308, 337, 528, 711
SspMI CTAG 2 cut(s) 245, 326
SstI GAGCTC 1 cut(s) 213
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 2 cut(s) 387, 522
TaqI TCGA 2 cut(s) 149, 492
TasI AATT 5 cut(s) 49, 308, 337, 528, 711
TfiI GAWTC 4 cut(s) 167, 193, 489, 623
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 2 cut(s) 206, 390
TseFI GTSAC 1 cut(s) 381
TseI GCWGC 1 cut(s) 767
Tsp45I GTSAC 1 cut(s) 381
TspDTI ATGAA 5 cut(s) 405, 516, 539, 663, 834
TspRI CASTG 2 cut(s) 206, 390
XcmI CCANNNNNNNNNTGG 2 cut(s) 186, 634
XspI CTAG 2 cut(s) 245, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.