pycom07g01720

Protein BPS1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015679
Physical Location & Seq
Reverse (-)
1348550 .. 1349512
963 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01720.1

Sequence Viewer

Length: 963 bp
ATGGTTCTCTTGGTGCAAAAGTTTAACCAAATCTACTCCAAGCTGGAGAATCACCACCACCACCACCACAACCACCACCAACTGTCGGAATCCGCCTTACCGGCATCTCTGGATGCCTTCCAAACCCATGTTTCAAACTACTTGAAAAAGTTGTTGCCTCTGAGTTCATCAGAATCTGCAGGGTCAGAGATTCCATCATTTCCATGGATTCAACAGTGCTTTGAGCTCCTACCCATCGTCCAAAGTGCTTTTGCAAAGCTGGTTGTGGAAGTAGATTTTCCCATGAGCAGATGGGGAGCTACTTCTGTGGATGAGTATCTCAAATACAGTTTGAGTTTGTTGGAGCTTTGCAATTCTGTCTGTTCTTCTCTGTCTAATCTTGGGAAGGCTAGGGTTTCACTGGCTCATGGTTTGAGCCTGGTGGAGAAATCGTCGCCTTCTTCGGCTTTGGAGCATCTGAAGGCAATCCAATTCCTACCAAAGGGTTTGAGCAAGGGAATCAGATTTCAAGGAAATGAAGAAGTTGGGAAAGGAAGTTGCTTGATTAGCAAGGAAACAGTGATTCGACAAGCTTTGGGGGTTATGCAGGAATTGGTATTCTGGCTAGGTGGGATTTTGATGTCTGGATTAGCTGGGAATCCCAAGCCATACTTGGAGGTGAAGAATTCTGGTGGAAGGTTTGTTGACTCATTGCTTTCGGGGTTGAATTCAAGAGTGAGTGAAATAATGGAGAGAAATGGTGGATTGAAGGAGGTGAAGGAGCTTAACGATGCAGTGACGGGCCTTGCAGCAGCAATCGAAATTGGAAGGAACAGCGGAGTAGAAGCCGAGGAATTGAGAAGGAAAATAGAGGTGTTTGAGAAGTCTGTGGACGGTTTGGGAAAGGAGGTGGATTCCGTCTTCGACAAGGTTTTGGCTGGGAGAAATCAATTGCTCAATGGCCTTCCACAGCAAAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1 DUF241

Protein Analysis

321

Amino Acids

35.05

Weight (kDa)

7.18

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 23 - 126 4.6e-06 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01730
malus_domestica MD02G1301300.v1.1 MD07G1022600.v1.1 MD07G1022700.v1.1
prunus_persica Prupe.2G023200_v2.0.a1
pyrus_communis pycom02g25310 pycom07g01710 pycom07g01720
rosa_chinensis RchiOBHm_Chr1g0318291
rosa_laevigata RLG00000030548
rosa_multiflora Rmu_ssc0000308.1_g000005
rosa_roxburghii Rroxscaffold_4G00329450
rosa_rugosa Rorug01G0019900
rosa_samantha Rh1AG032100 Rh1BG027600 Rh1DG039400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 93, 816
AcsI RAATTY 2 cut(s) 664, 706
AcuI CTGAAG 1 cut(s) 479
AfiI CCNNNNNNNGG 2 cut(s) 85, 481
AgsI TTSAA 7 cut(s) 135, 145, 212, 509, 706, 711, 748
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 8 cut(s) 43, 226, 259, 299, 346, 572, 632, 763
AluI AGCT 8 cut(s) 43, 226, 259, 299, 346, 572, 632, 763
Alw21I GWGCWC 1 cut(s) 228
AlwNI CAGNNNCTG 1 cut(s) 176
AoxI GGCC 2 cut(s) 781, 940
ApeKI GCWGC 2 cut(s) 788, 791
ApoI RAATTY 2 cut(s) 664, 706
AspS9I GGNCC 1 cut(s) 781
AsuHPI GGTGA 3 cut(s) 44, 670, 766
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 892
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 800, 803
BccI CCATC 3 cut(s) 202, 242, 285
BciT130I CCWGG 1 cut(s) 419
BfaI CTAG 2 cut(s) 390, 605
BfmI CTRYAG 1 cut(s) 177
BglI GCCNNNNNGGC 1 cut(s) 101
BisI GCNGC 2 cut(s) 789, 792
BlsI GCNGC 2 cut(s) 790, 793
Bme1390I CCNGG 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 781
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 4 cut(s) 103, 113, 463, 760
BpiI GAAGAC 1 cut(s) 892
BpmI CTGGAG 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 315
BsaJI CCNNGG 2 cut(s) 203, 828
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 481
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 405
Bse3DI GCAATG 1 cut(s) 689
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 2 cut(s) 203, 828
BseGI GGATG 2 cut(s) 118, 316
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 2 cut(s) 85, 481
BseMI GCAATG 1 cut(s) 689
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 405
BseXI GCAGC 2 cut(s) 800, 803
BseYI CCCAGC 2 cut(s) 632, 917
BshFI GGCC 2 cut(s) 783, 942
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 85, 481
BsnI GGCC 2 cut(s) 783, 942
Bsp1286I GDGCHC 1 cut(s) 228
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 2 cut(s) 93, 816
BspANI GGCC 2 cut(s) 783, 942
BspCNI CTCAG 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 689
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 1 cut(s) 405
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 203, 828
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 5 cut(s) 84, 216, 329, 559, 875
BstDEI CTNAG 1 cut(s) 161
BstDSI CCRYGG 1 cut(s) 203
BstENI CCTNNNNNAGG 1 cut(s) 479
BstF5I GGATG 2 cut(s) 118, 316
BstMWI GCNNNNNNNGC 2 cut(s) 101, 546
BstNI CCWGG 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 800, 803
BstV2I GAAGAC 1 cut(s) 892
BsuRI GGCC 2 cut(s) 783, 942
BtgI CCRYGG 1 cut(s) 203
BtsCI GGATG 2 cut(s) 118, 316
BtsI GCAGTG 1 cut(s) 780
BtsIMutI CAGTG 4 cut(s) 221, 398, 564, 780
CaiI CAGNNNCTG 1 cut(s) 176
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 781
CviAII CATG 4 cut(s) 128, 204, 283, 407
DdeI CTNAG 1 cut(s) 161
EciI GGCGGA 1 cut(s) 82
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 479
EcoICRI GAGCTC 1 cut(s) 226
EcoNI CCTNNNNNAGG 1 cut(s) 479
EcoRI GAATTC 2 cut(s) 664, 706
EcoRII CCWGG 1 cut(s) 417
EcoT14I CCWWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 4 cut(s) 131, 207, 286, 410
FaiI YATR 6 cut(s) 129, 205, 284, 408, 584, 649
FalI AAGNNNNNCTT 2 cut(s) 635, 667
FatI CATG 4 cut(s) 127, 203, 282, 406
Fnu4HI GCNGC 2 cut(s) 789, 792
FokI GGATG 2 cut(s) 125, 323
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 2 cut(s) 789, 792
FspBI CTAG 2 cut(s) 390, 605
GluI GCNGC 2 cut(s) 789, 792
GsaI CCCAGC 2 cut(s) 636, 921
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 2 cut(s) 783, 942
HapII CCGG 1 cut(s) 101
Hin1II CATG 4 cut(s) 131, 207, 286, 410
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HindIII AAGCTT 1 cut(s) 570
HpaII CCGG 1 cut(s) 101
HphI GGTGA 3 cut(s) 44, 670, 766
Hpy166II GTNNAC 2 cut(s) 685, 871
Hpy188I TCNGA 6 cut(s) 88, 162, 172, 187, 459, 503
Hpy188III TCNNGA 3 cut(s) 110, 624, 711
Hpy8I GTNNAC 2 cut(s) 685, 871
Hpy99I CGWCG 1 cut(s) 436
HpyCH4III ACNGT 5 cut(s) 84, 216, 329, 559, 875
HpyCH4V TGCA 7 cut(s) 16, 179, 254, 351, 586, 773, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 546
HpyF3I CTNAG 1 cut(s) 161
Hsp92II CATG 4 cut(s) 131, 207, 286, 410
LmnI GCTCC 5 cut(s) 231, 296, 343, 451, 760
Lsp1109I GCAGC 2 cut(s) 800, 803
LweI GCATC 4 cut(s) 103, 113, 463, 760
MaeI CTAG 2 cut(s) 390, 605
MaeIII GTNAC 1 cut(s) 775
MboII GAAGA 5 cut(s) 357, 432, 530, 673, 892
MfeI CAATTG 1 cut(s) 929
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 8 cut(s) 352, 470, 590, 664, 706, 801, 833, 929
MlyI GAGTC 1 cut(s) 680
MmeI TCCRAC 2 cut(s) 66, 321
MnlI CCTC 6 cut(s) 168, 649, 745, 823, 844, 880
MseI TTAA 2 cut(s) 24, 765
MslI CAYNNNNRTG 1 cut(s) 202
MspA1I CMGCKG 1 cut(s) 816
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 419
MunI CAATTG 1 cut(s) 929
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 101, 546
NcoI CCATGG 1 cut(s) 203
NlaIII CATG 4 cut(s) 131, 207, 286, 410
NmeAIII GCCGAG 1 cut(s) 853
NmuCI GTSAC 1 cut(s) 775
PfeI GAWTC 9 cut(s) 49, 89, 173, 190, 208, 498, 562, 637, 893
PkrI GCNGC 2 cut(s) 790, 793
PleI GAGTC 1 cut(s) 680
PpsI GAGTC 1 cut(s) 680
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 417
PspFI CCCAGC 2 cut(s) 632, 917
PspGI CCWGG 1 cut(s) 417
PspPI GGNCC 1 cut(s) 781
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 202
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 24, 765
SatI GCNGC 2 cut(s) 789, 792
Sau96I GGNCC 1 cut(s) 781
SchI GAGTC 1 cut(s) 680
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 1 cut(s) 228
SfaNI GCATC 4 cut(s) 103, 113, 463, 760
SfcI CTRYAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 202
Sse9I AATT 8 cut(s) 352, 470, 590, 664, 706, 801, 833, 929
SsiI CCGC 2 cut(s) 93, 816
SspMI CTAG 2 cut(s) 390, 605
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 5 cut(s) 84, 216, 329, 559, 875
TaqI TCGA 3 cut(s) 565, 798, 903
TasI AATT 8 cut(s) 352, 470, 590, 664, 706, 801, 833, 929
TfiI GAWTC 9 cut(s) 49, 89, 173, 190, 208, 498, 562, 637, 893
Tru1I TTAA 2 cut(s) 24, 765
Tru9I TTAA 2 cut(s) 24, 765
TscAI CASTG 4 cut(s) 221, 405, 564, 780
TseFI GTSAC 1 cut(s) 775
TseI GCWGC 2 cut(s) 788, 791
Tsp45I GTSAC 1 cut(s) 775
TspDTI ATGAA 2 cut(s) 156, 531
TspGWI ACGGA 1 cut(s) 886
TspRI CASTG 4 cut(s) 221, 405, 564, 780
XagI CCTNNNNNAGG 1 cut(s) 479
XapI RAATTY 2 cut(s) 664, 706
XcmI CCANNNNNNNNNTGG 2 cut(s) 201, 649
XspI CTAG 2 cut(s) 390, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.