RLG00000030548

Protein BPS1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015679
Physical Location & Seq
Forward (+)
63371692 .. 63373497
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030548

Sequence Viewer

Length: 1053 bp
ATGTATAAAACCCACAAGCACAAAAGATATCAACAACACCAAGCTTTAAAGTTTCAAATTAAGCAGCTTTTGCATTGTCTTTTTCTTGCAATGGTTCTCTTGTTACAAAAGATTGACAAACTCTACTCAAAGCTGGAGAATTACCACCACAACCACCACCACTACAATCACAACCATCAATCACAAGCCTTATCATCTTCTCTGGAGGCTTTTGAAACCCTTGTTTCCAATTCCTTTAACAAATTGTTTTCGAGCTCGAAATCAGCAGGATCTGAAGTTCCATCATTTCCATGGATCCAGCAGTGTTTTGAGCTCATACCCATCATCAAAAATGGTTTTGCAAAGCTAGTTGTGGCCGTAGACTATCCCATGACTAAATGGGAAGCTGATTCTGTGGAAGAGTATCTCAAATACACCTTGAATTTGCTAGAGTTGTGCAACTCCATCACTTGCTCTCTTTCTCATCTTGGGAAGGAGAGGCTTTCACTGTCTCATGGTTTGAATCTTGTGGAGAGTTCATCACCTTCTTTGGCTGTGGAGCATCTGAGACAAATTCAAGTCCAACCAAAGAGTTTGAGCAAGGATTTCACATTCCAAGGAAATGAAGAACATGGGAAAGAAAGGTTTCCTATTACCAAGAAATCAGTTATTCATCAAGCTTTGGTGCTTATGGAGGGGATGCTGTTTTGGGTATGTGGGATTTTGATAACTGGTTTGGTTGGGGATTCCAAGCCATACTTGGAGATGAGAAAATCTGGTGGAAGGTTAGTAAGTTCATTGATTTCTGGGTTGGATTTGAGTGTGGGTGAAGTAATTGTGGAGAGAAAAGGCATGTTGAAAGAGGTGAAAGAGATAAATGACTCGGTTGCAGCCCTTGTTTCTGCTATTGGGATTGGGAAAACGACTAAAGCAGAAGCTGAGGAATTGCAAAGAAGATTAGAGGTGTTTGAGAAGATGGTGGAGGGTTTGGGAAAAGAGGTGGATTGTCTTTTCAATAAGGTTTTGGCTGGAAGAAATCAACTGCTCAATGGATTTCAACACCAAAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1 DUF241

Protein Analysis

351

Amino Acids

39.64

Weight (kDa)

8.72

Isoelectric Point (pI)

32.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 130 - 343 7.1e-07 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01730
malus_domestica MD02G1301300.v1.1 MD07G1022600.v1.1 MD07G1022700.v1.1
prunus_persica Prupe.2G023200_v2.0.a1
pyrus_communis pycom02g25310 pycom07g01710 pycom07g01720
rosa_chinensis RchiOBHm_Chr1g0318291
rosa_laevigata RLG00000030548
rosa_multiflora Rmu_ssc0000308.1_g000005
rosa_roxburghii Rroxscaffold_4G00329450
rosa_rugosa Rorug01G0019900
rosa_samantha Rh1AG032100 Rh1BG027600 Rh1DG039400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 360
AclWI GGATC 3 cut(s) 277, 289, 302
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 2 cut(s) 421, 552
AcuI CTGAAG 1 cut(s) 294
AgsI TTSAA 8 cut(s) 56, 215, 421, 502, 557, 838, 994, 1037
AloI GAACNNNNNNTCC 2 cut(s) 261, 293
AluBI AGCT 9 cut(s) 44, 67, 133, 255, 313, 346, 386, 659, 917
AluI AGCT 9 cut(s) 44, 67, 133, 255, 313, 346, 386, 659, 917
Alw21I GWGCWC 2 cut(s) 257, 315
Alw26I GTCTC 2 cut(s) 495, 541
AlwI GGATC 3 cut(s) 277, 289, 302
AlwNI CAGNNNCTG 2 cut(s) 272, 917
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 2 cut(s) 64, 869
ApoI RAATTY 2 cut(s) 421, 552
Asp700I GAANNNNTTC 1 cut(s) 624
AsuHPI GGTGA 3 cut(s) 513, 818, 856
BamHI GGATCC 1 cut(s) 294
BanII GRGCYC 2 cut(s) 257, 315
Bbv12I GWGCWC 2 cut(s) 257, 315
BbvCI CCTCAGC 1 cut(s) 918
BbvI GCAGC 2 cut(s) 76, 881
BccI CCATC 5 cut(s) 183, 289, 329, 452, 949
BceAI ACGGC 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 495, 541
BfaI CTAG 2 cut(s) 347, 428
BisI GCNGC 2 cut(s) 65, 870
BlsI GCNGC 2 cut(s) 66, 871
BmiI GGNNCC 1 cut(s) 296
BmsI GCATC 2 cut(s) 550, 669
BpmI CTGGAG 2 cut(s) 155, 224
Bpu10I CCTNAGC 1 cut(s) 918
BsaJI CCNNGG 2 cut(s) 290, 595
Bse1I ACTGG 1 cut(s) 715
Bse3DI GCAATG 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 290, 595
BseGI GGATG 1 cut(s) 684
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 536, 909
BseNI ACTGG 1 cut(s) 715
BseXI GCAGC 2 cut(s) 76, 881
BshFI GGCC 1 cut(s) 356
BsiHKAI GWGCWC 2 cut(s) 257, 315
BsmAI GTCTC 2 cut(s) 495, 541
BsnI GGCC 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 257, 315
Bsp143I GATC 2 cut(s) 269, 294
Bsp19I CCATGG 1 cut(s) 290
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 2 cut(s) 537, 910
BspLI GGNNCC 1 cut(s) 296
BspPI GGATC 3 cut(s) 277, 289, 302
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 1 cut(s) 715
BssECI CCNNGG 2 cut(s) 290, 595
BssMI GATC 2 cut(s) 269, 294
BssT1I CCWWGG 2 cut(s) 290, 595
Bst4CI ACNGT 1 cut(s) 489
Bst6I CTCTTC 1 cut(s) 393
BstAPI GCANNNNNTGC 1 cut(s) 70
BstDEI CTNAG 2 cut(s) 545, 918
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 1 cut(s) 684
BstKTI GATC 2 cut(s) 272, 297
BstMAI GTCTC 2 cut(s) 495, 541
BstMBI GATC 2 cut(s) 269, 294
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 835
BstV1I GCAGC 2 cut(s) 76, 881
BstX2I RGATCY 2 cut(s) 269, 294
BstYI RGATCY 2 cut(s) 269, 294
BsuRI GGCC 1 cut(s) 356
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 1 cut(s) 684
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 2 cut(s) 308, 485
CaiI CAGNNNCTG 2 cut(s) 272, 917
CviAII CATG 5 cut(s) 291, 370, 494, 611, 832
DdeI CTNAG 2 cut(s) 545, 918
DpnI GATC 2 cut(s) 271, 296
DpnII GATC 2 cut(s) 269, 294
DraI TTTAAA 1 cut(s) 48
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Ecl136II GAGCTC 2 cut(s) 255, 313
Eco130I CCWWGG 2 cut(s) 290, 595
Eco24I GRGCYC 2 cut(s) 257, 315
Eco32I GATATC 1 cut(s) 29
Eco53kI GAGCTC 2 cut(s) 255, 313
Eco57I CTGAAG 1 cut(s) 294
EcoICRI GAGCTC 2 cut(s) 255, 313
EcoRV GATATC 1 cut(s) 29
EcoT14I CCWWGG 2 cut(s) 290, 595
EcoT38I GRGCYC 2 cut(s) 257, 315
ErhI CCWWGG 2 cut(s) 290, 595
FaeI CATG 5 cut(s) 294, 373, 497, 614, 835
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FatI CATG 5 cut(s) 290, 369, 493, 610, 831
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 2 cut(s) 65, 870
FokI GGATG 1 cut(s) 691
FriOI GRGCYC 2 cut(s) 257, 315
Fsp4HI GCNGC 2 cut(s) 65, 870
FspBI CTAG 2 cut(s) 347, 428
GluI GCNGC 2 cut(s) 65, 870
GsuI CTGGAG 2 cut(s) 155, 224
HaeIII GGCC 1 cut(s) 356
Hin1II CATG 5 cut(s) 294, 373, 497, 614, 835
HindIII AAGCTT 2 cut(s) 42, 657
HinfI GANTC 4 cut(s) 389, 502, 725, 860
HphI GGTGA 3 cut(s) 513, 818, 856
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 274, 546
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 361
HpyAV CCTTC 3 cut(s) 466, 534, 756
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 6 cut(s) 73, 89, 341, 438, 869, 928
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 2 cut(s) 545, 918
Hsp92II CATG 5 cut(s) 294, 373, 497, 614, 835
Kzo9I GATC 2 cut(s) 269, 294
LmnI GCTCC 1 cut(s) 538
LpnPI CCDG 8 cut(s) 119, 188, 252, 311, 696, 741, 771, 993
Lsp1109I GCAGC 2 cut(s) 76, 881
LweI GCATC 2 cut(s) 550, 669
MaeI CTAG 2 cut(s) 347, 428
MaeIII GTNAC 1 cut(s) 102
MalI GATC 2 cut(s) 271, 296
MboI GATC 2 cut(s) 269, 294
MboII GAAGA 6 cut(s) 189, 410, 617, 945, 964, 1023
MflI RGATCY 2 cut(s) 269, 294
MhlI GDGCHC 2 cut(s) 257, 315
MluCI AATT 8 cut(s) 57, 139, 229, 242, 421, 552, 813, 923
MlyI GAGTC 1 cut(s) 854
MmeI TCCRAC 2 cut(s) 586, 771
MnlI CCTC 8 cut(s) 199, 471, 667, 835, 913, 934, 955, 970
MroXI GAANNNNTTC 1 cut(s) 624
MseI TTAA 3 cut(s) 47, 60, 237
MslI CAYNNNNRTG 1 cut(s) 289
MwoI GCNNNNNNNGC 1 cut(s) 70
NcoI CCATGG 1 cut(s) 290
NdeII GATC 2 cut(s) 269, 294
NlaIII CATG 5 cut(s) 294, 373, 497, 614, 835
NlaIV GGNNCC 1 cut(s) 296
NspI RCATGY 1 cut(s) 835
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 3 cut(s) 389, 502, 725
PkrI GCNGC 2 cut(s) 66, 871
PleI GAGTC 1 cut(s) 854
PpsI GAGTC 1 cut(s) 854
Psp124BI GAGCTC 2 cut(s) 257, 315
PspN4I GGNNCC 1 cut(s) 296
PstNI CAGNNNCTG 2 cut(s) 272, 917
PsuI RGATCY 2 cut(s) 269, 294
RseI CAYNNNNRTG 1 cut(s) 289
SacI GAGCTC 2 cut(s) 257, 315
SaqAI TTAA 3 cut(s) 47, 60, 237
SatI GCNGC 2 cut(s) 65, 870
Sau3AI GATC 2 cut(s) 269, 294
SchI GAGTC 1 cut(s) 854
SduI GDGCHC 2 cut(s) 257, 315
SfaNI GCATC 2 cut(s) 550, 669
SmiMI CAYNNNNRTG 1 cut(s) 289
Sse9I AATT 8 cut(s) 57, 139, 229, 242, 421, 552, 813, 923
SspMI CTAG 2 cut(s) 347, 428
SstI GAGCTC 2 cut(s) 257, 315
StyI CCWWGG 2 cut(s) 290, 595
TaaI ACNGT 1 cut(s) 489
TaqI TCGA 2 cut(s) 251, 257
TasI AATT 8 cut(s) 57, 139, 229, 242, 421, 552, 813, 923
TfiI GAWTC 3 cut(s) 389, 502, 725
Tru1I TTAA 3 cut(s) 47, 60, 237
Tru9I TTAA 3 cut(s) 47, 60, 237
TscAI CASTG 2 cut(s) 308, 492
TseI GCWGC 2 cut(s) 64, 869
TspDTI ATGAA 4 cut(s) 507, 618, 641, 765
TspRI CASTG 2 cut(s) 308, 492
XapI RAATTY 2 cut(s) 421, 552
XceI RCATGY 1 cut(s) 835
XcmI CCANNNNNNNNNTGG 2 cut(s) 288, 736
XmiI GTMKAC 1 cut(s) 360
XmnI GAANNNNTTC 1 cut(s) 624
XspI CTAG 2 cut(s) 347, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.