Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0015679

Physical Location & Seq

Genomic Coordinates Reverse (-)

1887467 .. 1888414

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1022700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGTTCTCTTGGTGCAAAAGTTTAACCAAATCTACTCCAAGCTCGAGAATCACCACCACCACCACCCGTCGGAACCCACCTTATCGGCATCTCTGGATGCCTTCCAAACCCATGTTTCAAACTCCTTGAAAAAGTTGTTGCCTCTGAGTGCATCAAAATCTGCAGGGTCAGAGATTCCATCATTTCCATGGATTCTACAGTGCTTTGAGCTCCTACCCATCGTCCAAAGTGCTTTTGCAAAGCTGGTTGTGGAAGTAGATTTTCCCATGAGCAGATGGGAAGCCGCTTCTGTGGATGAGTATCTCAAATACAGTTTGAGTTTGTTGGAGCTTTGCAATTCTGTCAGTTCTTCTCTGTCTAATCTTGGGAAGGCTAGGGTTTCGCTGGCTCATGGTTTGAGCCTGGTGGAGAAATCGTCGCCTTCTTCGGCTTTGGAGCATCTGAAGGCAATCCAATTCCAACCAAAGGGATTGAGCAAGGGAATCAGATTCCAAGGAAATGAACAAGTTGGGAAAGGAAGTTGCTTGATTAGCAAGGAAACAGTGATTCAACAAGCTTTGGGGGTTATGCAGGGAATGGTATTCTGGCTAGGTGGGATTTTGATGTCTGGATTAGCTGGGAATGCCAAGCCATACTTGGAGGTGAGGAATTCGGGTGGAAGGTTTGTTGACTCGTTGCTTTCGGGGTTGAATTCGAGAGTGAGTGAAATAATGGAGAGAAATGGTGGATTGAAGGAGGTGAAGGAGCTTAACGATGCAGTGACGGGCCTTGCAGCAGCAATCGGAATTGGAAAGAACAGCGGAGCAGAAGCCGAGGAATTGAGAAGAAAATTAGAGGTGTTTGAGAAGTCTGTGGACGGTTTGGGAAAGGAGGTGGATTCCGTCTTCGACAAAGTTTTGGCTGGGAGAAATCAATTGCTCAATGGCCTTCCACAGCAAATGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1 DUF241

Protein Analysis

316

Amino Acids

34.14

Weight (kDa)

8.33

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015679)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01730
malus_domestica	MD02G1301300.v1.1 MD07G1022600.v1.1 MD07G1022700.v1.1
prunus_persica	Prupe.2G023200_v2.0.a1
pyrus_communis	pycom02g25310 pycom07g01710 pycom07g01720
rosa_chinensis	RchiOBHm_Chr1g0318291
rosa_laevigata	RLG00000030548
rosa_multiflora	Rmu_ssc0000308.1_g000005
rosa_roxburghii	Rroxscaffold_4G00329450
rosa_rugosa	Rorug01G0019900
rosa_samantha	Rh1AG032100 Rh1BG027600 Rh1DG039400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	285, 801
AcsI	RAATTY	2 cut(s)	649, 691
AcuI	CTGAAG	1 cut(s)	464
AfiI	CCNNNNNNNGG	2 cut(s)	70, 466
AgsI	TTSAA	5 cut(s)	120, 130, 551, 691, 733
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	7 cut(s)	43, 211, 244, 331, 557, 617, 748
AluI	AGCT	7 cut(s)	43, 211, 244, 331, 557, 617, 748
Alw21I	GWGCWC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	2 cut(s)	766, 925
ApeKI	GCWGC	2 cut(s)	773, 776
ApoI	RAATTY	2 cut(s)	649, 691
AspS9I	GGNCC	1 cut(s)	766
AsuHPI	GGTGA	3 cut(s)	44, 655, 751
AvaI	CYCGRG	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	877
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	785, 788
BccI	CCATC	3 cut(s)	187, 227, 270
BciT130I	CCWGG	1 cut(s)	404
BfaI	CTAG	2 cut(s)	375, 590
BfmI	CTRYAG	2 cut(s)	162, 197
BisI	GCNGC	3 cut(s)	285, 774, 777
BlsI	GCNGC	3 cut(s)	286, 775, 778
Bme1390I	CCNGG	1 cut(s)	404
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	766
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	404
BmsI	GCATC	5 cut(s)	88, 98, 161, 448, 745
BpiI	GAAGAC	1 cut(s)	877
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	188, 493, 813
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 466
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	3 cut(s)	188, 493, 813
BseGI	GGATG	2 cut(s)	103, 301
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	70, 466
BseMII	CTCAG	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	785, 788
BseYI	CCCAGC	2 cut(s)	617, 902
BshFI	GGCC	2 cut(s)	768, 927
BsiHKAI	GWGCWC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	70, 466
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	2 cut(s)	768, 927
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp19I	CCATGG	1 cut(s)	188
BspACI	CCGC	2 cut(s)	285, 801
BspANI	GGCC	2 cut(s)	768, 927
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	188, 493, 813
BssT1I	CCWWGG	2 cut(s)	188, 493
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	4 cut(s)	201, 314, 544, 860
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	103, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	531, 623
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	402
BstSFI	CTRYAG	2 cut(s)	162, 197
BstV1I	GCAGC	2 cut(s)	785, 788
BstV2I	GAAGAC	1 cut(s)	877
BsuRI	GGCC	2 cut(s)	768, 927
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	103, 301
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	3 cut(s)	206, 549, 765
Cac8I	GCNNGC	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	766
CviAII	CATG	4 cut(s)	113, 189, 268, 392
DdeI	CTNAG	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	188, 493
Eco24I	GRGCYC	1 cut(s)	213
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	464
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	211
EcoRI	GAATTC	2 cut(s)	649, 691
EcoRII	CCWGG	1 cut(s)	402
EcoT14I	CCWWGG	2 cut(s)	188, 493
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	2 cut(s)	188, 493
FaeI	CATG	4 cut(s)	116, 192, 271, 395
FaiI	YATR	6 cut(s)	114, 190, 269, 393, 569, 634
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FatI	CATG	4 cut(s)	112, 188, 267, 391
Fnu4HI	GCNGC	3 cut(s)	285, 774, 777
FokI	GGATG	2 cut(s)	110, 308
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	3 cut(s)	285, 774, 777
FspBI	CTAG	2 cut(s)	375, 590
GluI	GCNGC	3 cut(s)	285, 774, 777
GsaI	CCCAGC	2 cut(s)	621, 906
HaeIII	GGCC	2 cut(s)	768, 927
Hin1II	CATG	4 cut(s)	116, 192, 271, 395
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	8 cut(s)	49, 175, 193, 483, 489, 547, 671, 878
HphI	GGTGA	3 cut(s)	44, 655, 751
Hpy166II	GTNNAC	2 cut(s)	670, 856
Hpy188I	TCNGA	6 cut(s)	73, 147, 172, 444, 488, 785
Hpy188III	TCNNGA	4 cut(s)	46, 95, 609, 696
Hpy8I	GTNNAC	2 cut(s)	670, 856
Hpy99I	CGWCG	2 cut(s)	73, 421
HpyAV	CCTTC	8 cut(s)	112, 364, 432, 439, 654, 727, 736, 938
HpyCH4III	ACNGT	4 cut(s)	201, 314, 544, 860
HpyCH4V	TGCA	8 cut(s)	16, 152, 164, 239, 336, 571, 758, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	531, 623
HpyF3I	CTNAG	1 cut(s)	146
Hsp92II	CATG	4 cut(s)	116, 192, 271, 395
LmnI	GCTCC	5 cut(s)	216, 328, 436, 745, 803
Lsp1109I	GCAGC	2 cut(s)	785, 788
LweI	GCATC	5 cut(s)	88, 98, 161, 448, 745
MaeI	CTAG	2 cut(s)	375, 590
MaeIII	GTNAC	1 cut(s)	760
MboII	GAAGA	4 cut(s)	342, 417, 837, 877
MfeI	CAATTG	1 cut(s)	914
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	8 cut(s)	337, 455, 649, 691, 786, 818, 830, 914
MlyI	GAGTC	1 cut(s)	665
MmeI	TCCRAC	3 cut(s)	51, 306, 484
MnlI	CCTC	7 cut(s)	153, 634, 639, 730, 808, 829, 865
MseI	TTAA	2 cut(s)	24, 750
MslI	CAYNNNNRTG	1 cut(s)	187
MspA1I	CMGCKG	1 cut(s)	801
MspR9I	CCNGG	1 cut(s)	404
MunI	CAATTG	1 cut(s)	914
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	531, 623
NcoI	CCATGG	1 cut(s)	188
NlaIII	CATG	4 cut(s)	116, 192, 271, 395
NlaIV	GGNNCC	1 cut(s)	75
NmeAIII	GCCGAG	1 cut(s)	838
NmuCI	GTSAC	1 cut(s)	760
PaeR7I	CTCGAG	1 cut(s)	44
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	7 cut(s)	49, 175, 193, 483, 489, 547, 878
PkrI	GCNGC	3 cut(s)	286, 775, 778
PleI	GAGTC	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	665
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	402
PspFI	CCCAGC	2 cut(s)	617, 902
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	766
PstI	CTGCAG	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	24, 750
SatI	GCNGC	3 cut(s)	285, 774, 777
Sau96I	GGNCC	1 cut(s)	766
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	1 cut(s)	213
SfaNI	GCATC	5 cut(s)	88, 98, 161, 448, 745
SfcI	CTRYAG	2 cut(s)	162, 197
Sfr274I	CTCGAG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	8 cut(s)	337, 455, 649, 691, 786, 818, 830, 914
SsiI	CCGC	2 cut(s)	285, 801
SspMI	CTAG	2 cut(s)	375, 590
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	402
StyI	CCWWGG	2 cut(s)	188, 493
TaaI	ACNGT	4 cut(s)	201, 314, 544, 860
TaqI	TCGA	3 cut(s)	45, 695, 888
TasI	AATT	8 cut(s)	337, 455, 649, 691, 786, 818, 830, 914
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	7 cut(s)	49, 175, 193, 483, 489, 547, 878
Tru1I	TTAA	2 cut(s)	24, 750
Tru9I	TTAA	2 cut(s)	24, 750
TscAI	CASTG	3 cut(s)	206, 549, 765
TseFI	GTSAC	1 cut(s)	760
TseI	GCWGC	2 cut(s)	773, 776
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	1 cut(s)	516
TspGWI	ACGGA	1 cut(s)	871
TspRI	CASTG	3 cut(s)	206, 549, 765
XapI	RAATTY	2 cut(s)	649, 691
XcmI	CCANNNNNNNNNTGG	2 cut(s)	186, 634
XhoI	CTCGAG	1 cut(s)	44
XspI	CTAG	2 cut(s)	375, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.