pycom02g25310

Protein BPS1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0015679
Physical Location & Seq
Forward (+)
23309858 .. 23310811
954 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g25310.1

Sequence Viewer

Length: 954 bp
ATGGTTTTCTTGTTGCAAAAGTTTAACCAAATCTGCTCCAAGCTGGAGAATCACCACCACCACAACCACCACCCGTCGCAACCTGCCTTATCGGCATCTATGGAGGCCTTCCAAACCCATGTATCAAATTCCCTCAAAAAATTGTTGCCTCTGAGTTCATCAAAATCTGCAGGATCAGAGATTCCATCATTTCCATGGATTCAGCAGTGTTATGAGCTGGTGCCGATCATCCAAAGTGCTTTTGCAAAGCTGGTTGTGGAAGTAGACTTTCCCATGAGCAGATGGGAAGCTGCTTCTGTGGATAGGTATCTCAAATACTCTTTGAGTTTGTTGGAGCTTTGCAATTCTGTCAGTTCTTCTCTGTCTAATCTCGGGAAGGCTAGGGTTTCCCTAGCTCATGGCTTGAGCCTGGTGGAGAATTCGTCGCCTTCTTCGGCTTTGGAGCATCTGAAGGCAATCCAATTCCAACCAAAGGGTTTGAGCAAGGGAATCAGATTCCAAGAAAGTGAAGAGGTTGGGAAAGGAAGTTGCTTGACTAGCAAGGAAACAGTGATTCATCAAGCTTTGGATATTATGCAGGGAATGGTATTTTGGGTGGGCGGGATTTTGATGTCTGGATTAGCTGGGAATCCCAAACCTTACTTGGAGGTGAGGAATTCAAGTAGAAGGATTGTTGACCCGTTGCTTTCGGGGTTAAATTCGAGACCGGATGAAATAATGGAGAGAAATGGTGGATTGAAGGAGGTGAAGGAGCTTAATGATGCAGTGGCGGGTCTTGCTGCGGCAATCAGAACTGGAAAAAACAGTGGAGCAGAAGCTGAGGAATTGAGAAGAAGATTAGAGGTATTTGAGAAGTTCGTGGATGGTTTGGGAAAGGAGGTGGATTCCGTCTTCGACAAGGCTTTGGCTGGGAGAAATCAATTGCTCAATGGCCTTCAACAGCAGAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1 DUF241

Protein Analysis

318

Amino Acids

34.84

Weight (kDa)

8.58

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01730
malus_domestica MD02G1301300.v1.1 MD07G1022600.v1.1 MD07G1022700.v1.1
prunus_persica Prupe.2G023200_v2.0.a1
pyrus_communis pycom02g25310 pycom07g01710 pycom07g01720
rosa_chinensis RchiOBHm_Chr1g0318291
rosa_laevigata RLG00000030548
rosa_multiflora Rmu_ssc0000308.1_g000005
rosa_roxburghii Rroxscaffold_4G00329450
rosa_rugosa Rorug01G0019900
rosa_samantha Rh1AG032100 Rh1BG027600 Rh1DG039400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 91
AccB1I GGYRCC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 264
AciI CCGC 3 cut(s) 600, 770, 782
AclWI GGATC 1 cut(s) 181
AcsI RAATTY 4 cut(s) 127, 418, 655, 697
AcuI CTGAAG 1 cut(s) 470
AfiI CCNNNNNNNGG 1 cut(s) 472
AgsI TTSAA 3 cut(s) 660, 739, 938
AjnI CCWGG 1 cut(s) 408
AjuI GAANNNNNNNTTGG 2 cut(s) 574, 606
Alw26I GTCTC 1 cut(s) 697
AlwI GGATC 1 cut(s) 181
AlwNI CAGNNNCTG 1 cut(s) 818
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 2 cut(s) 105, 931
ApeKI GCWGC 2 cut(s) 290, 779
ApoI RAATTY 4 cut(s) 127, 418, 655, 697
AsuHPI GGTGA 3 cut(s) 44, 661, 757
AvaI CYCGRG 1 cut(s) 371
BaeI ACNNNNGTAYC 2 cut(s) 105, 138
BanI GGYRCC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 883
BbvCI CCTCAGC 1 cut(s) 819
BbvI GCAGC 2 cut(s) 277, 766
BccI CCATC 3 cut(s) 193, 276, 857
BciT130I CCWGG 1 cut(s) 410
BcoDI GTCTC 1 cut(s) 697
BfaI CTAG 3 cut(s) 381, 392, 537
BfmI CTRYAG 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 91
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 3 cut(s) 291, 780, 783
BlsI GCNGC 3 cut(s) 292, 781, 784
Bme1390I CCNGG 1 cut(s) 410
BmeT110I CYCGRG 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 3 cut(s) 104, 454, 751
BpiI GAAGAC 1 cut(s) 883
BpmI CTGGAG 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 819
BpuEI CTTGAG 1 cut(s) 424
BsaBI GATNNNNATC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 697
BsaJI CCNNGG 1 cut(s) 194
BsaWI WCCGGW 1 cut(s) 706
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse1I ACTGG 1 cut(s) 799
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 3 cut(s) 228, 715, 868
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMII CTCAG 2 cut(s) 143, 810
BseNI ACTGG 1 cut(s) 799
BseXI GCAGC 2 cut(s) 277, 766
BseYI CCCAGC 2 cut(s) 623, 908
BshFI GGCC 2 cut(s) 107, 933
BshNI GGYRCC 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 1 cut(s) 707
BslI CCNNNNNNNGG 1 cut(s) 472
BsmAI GTCTC 1 cut(s) 697
BsnI GGCC 2 cut(s) 107, 933
Bso31I GGTCTC 1 cut(s) 697
BsoBI CYCGRG 1 cut(s) 371
Bsp143I GATC 2 cut(s) 173, 225
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 3 cut(s) 600, 770, 782
BspANI GGCC 2 cut(s) 107, 933
BspCNI CTCAG 2 cut(s) 144, 811
BspLI GGNNCC 1 cut(s) 222
BspMAI CTGCAG 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 91
BspPI GGATC 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 697
BsrI ACTGG 1 cut(s) 799
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 2 cut(s) 173, 225
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 2 cut(s) 550, 806
Bst6I CTCTTC 1 cut(s) 504
BstDEI CTNAG 2 cut(s) 152, 819
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 3 cut(s) 228, 715, 868
BstKTI GATC 2 cut(s) 176, 228
BstMAI GTCTC 1 cut(s) 697
BstMBI GATC 2 cut(s) 173, 225
BstMWI GCNNNNNNNGC 3 cut(s) 92, 537, 776
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 277, 766
BstV2I GAAGAC 1 cut(s) 883
BsuRI GGCC 2 cut(s) 107, 933
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 3 cut(s) 228, 715, 868
BtsI GCAGTG 2 cut(s) 212, 771
BtsIMutI CAGTG 4 cut(s) 212, 555, 771, 811
BveI ACCTGC 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 818
CviAII CATG 4 cut(s) 119, 195, 274, 398
DdeI CTNAG 2 cut(s) 152, 819
DpnI GATC 2 cut(s) 175, 227
DpnII GATC 2 cut(s) 173, 225
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 194
Eco147I AGGCCT 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 371
EcoRI GAATTC 2 cut(s) 418, 655
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 4 cut(s) 122, 198, 277, 401
FaiI YATR 7 cut(s) 101, 120, 196, 213, 275, 399, 575
FatI CATG 4 cut(s) 118, 194, 273, 397
FauI CCCGC 2 cut(s) 593, 763
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 3 cut(s) 291, 780, 783
FokI GGATG 3 cut(s) 215, 722, 875
Fsp4HI GCNGC 3 cut(s) 291, 780, 783
FspBI CTAG 3 cut(s) 381, 392, 537
GluI GCNGC 3 cut(s) 291, 780, 783
GsaI CCCAGC 2 cut(s) 627, 912
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 2 cut(s) 107, 933
HapII CCGG 1 cut(s) 707
Hin1II CATG 4 cut(s) 122, 198, 277, 401
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 8 cut(s) 49, 181, 199, 489, 495, 553, 628, 884
HpaII CCGG 1 cut(s) 707
HphI GGTGA 3 cut(s) 44, 661, 757
Hpy166II GTNNAC 2 cut(s) 265, 676
Hpy188I TCNGA 5 cut(s) 153, 178, 450, 494, 791
Hpy188III TCNNGA 3 cut(s) 373, 615, 702
Hpy8I GTNNAC 2 cut(s) 265, 676
Hpy99I CGWCG 2 cut(s) 79, 427
HpyAV CCTTC 8 cut(s) 118, 370, 438, 445, 660, 733, 742, 944
HpyCH4III ACNGT 2 cut(s) 550, 806
HpyCH4V TGCA 6 cut(s) 16, 170, 245, 342, 577, 764
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 537, 776
HpyF3I CTNAG 2 cut(s) 152, 819
Hsp92II CATG 4 cut(s) 122, 198, 277, 401
Kzo9I GATC 2 cut(s) 173, 225
LmnI GCTCC 5 cut(s) 41, 334, 442, 751, 809
Lsp1109I GCAGC 2 cut(s) 277, 766
LweI GCATC 3 cut(s) 104, 454, 751
MaeI CTAG 3 cut(s) 381, 392, 537
MalI GATC 2 cut(s) 175, 227
MboI GATC 2 cut(s) 173, 225
MboII GAAGA 6 cut(s) 348, 423, 521, 843, 846, 883
MfeI CAATTG 1 cut(s) 920
MluCI AATT 9 cut(s) 127, 140, 343, 418, 461, 655, 697, 824, 920
MmeI TCCRAC 2 cut(s) 312, 490
MseI TTAA 3 cut(s) 24, 695, 756
MslI CAYNNNNRTG 1 cut(s) 193
MspI CCGG 1 cut(s) 707
MspR9I CCNGG 1 cut(s) 410
MunI CAATTG 1 cut(s) 920
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 3 cut(s) 92, 537, 776
NcoI CCATGG 1 cut(s) 194
NdeII GATC 2 cut(s) 173, 225
NlaIII CATG 4 cut(s) 122, 198, 277, 401
NlaIV GGNNCC 1 cut(s) 222
PceI AGGCCT 1 cut(s) 107
PfeI GAWTC 8 cut(s) 49, 181, 199, 489, 495, 553, 628, 884
PkrI GCNGC 3 cut(s) 292, 781, 784
Psp6I CCWGG 1 cut(s) 408
PspFI CCCAGC 2 cut(s) 623, 908
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 222
PstI CTGCAG 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 818
RseI CAYNNNNRTG 1 cut(s) 193
SaqAI TTAA 3 cut(s) 24, 695, 756
SatI GCNGC 3 cut(s) 291, 780, 783
Sau3AI GATC 2 cut(s) 173, 225
ScrFI CCNGG 1 cut(s) 410
SfaNI GCATC 3 cut(s) 104, 454, 751
SfcI CTRYAG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
Sse9I AATT 9 cut(s) 127, 140, 343, 418, 461, 655, 697, 824, 920
SseBI AGGCCT 1 cut(s) 107
SsiI CCGC 3 cut(s) 600, 770, 782
SspMI CTAG 3 cut(s) 381, 392, 537
StuI AGGCCT 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 550, 806
TaqI TCGA 2 cut(s) 701, 894
TasI AATT 9 cut(s) 127, 140, 343, 418, 461, 655, 697, 824, 920
TauI GCSGC 1 cut(s) 785
TfiI GAWTC 8 cut(s) 49, 181, 199, 489, 495, 553, 628, 884
Tru1I TTAA 3 cut(s) 24, 695, 756
Tru9I TTAA 3 cut(s) 24, 695, 756
TscAI CASTG 4 cut(s) 212, 555, 771, 811
TseI GCWGC 2 cut(s) 290, 779
TspDTI ATGAA 3 cut(s) 147, 545, 726
TspGWI ACGGA 1 cut(s) 877
TspRI CASTG 4 cut(s) 212, 555, 771, 811
XapI RAATTY 4 cut(s) 127, 418, 655, 697
XcmI CCANNNNNNNNNTGG 2 cut(s) 192, 640
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 3 cut(s) 381, 392, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.