Rh1BG027600

Protein BPS1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0015679
Physical Location & Seq
Reverse (-)
3859281 .. 3859964
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG027600.1

Sequence Viewer

Length: 684 bp
ATGACTAAATGGGAAGCTGATTCTGTGGAAGAGTATCTCAAATACACCTTGAATTTGCTAGAGTTGTGCAACTCCATCACTTGCTCTCTTTCTCATCTTGGGAAAGAGAGGCTTTCACTGTCTCATGGTTTGAATCTTGTGGAGAGTTCATCACCTTCTTTGGCTGTGGAGCATCTGAGACATATTCAAGTCCAACTAAAGAGTTTGAGCAAGGATTTCAGATTCCAAGGAAATGAAGAACATGGGAAAGAGAGGTTTCCTATTCCCAAGAAATCAGTTATTCATCAAGCTTTGGTGGTTATGGAGGGGATGGTGTTTTGGGTATGTGGGATTTTGATGACTGGTTTGGTTGGGGATTCCAAGCCGTACTTGGAGATGAGAAAATCTGGTGGAAGGTTAGTAAGTCCATTGATTTCTGGATTGGATTTGAGTGTGGGTGACGTAATTGTGGAGAAAAAAAGCATGTTGAAAGAGGTAAAAGAGATTAATGACTCAGTTGCAGCCCTTGTTTCTGCTATTGGGATTGGGAAAAAGAGTGAAGCAGAAGCTGAAGAATTACAAAGAAGATTAGAGGTGTTTGAGAAGATGGTGGAGGGTTTGGGAAAAGAGGTGGATTGTCTTTTCAATAAGGTTTTGGCTGGAAGAAATCAACTGCTCAATGGATTTCAACACCAAAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1 DUF241

Protein Analysis

227

Amino Acids

25.33

Weight (kDa)

6.72

Isoelectric Point (pI)

28.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 7 - 220 2.9e-08 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01730
malus_domestica MD02G1301300.v1.1 MD07G1022600.v1.1 MD07G1022700.v1.1
prunus_persica Prupe.2G023200_v2.0.a1
pyrus_communis pycom02g25310 pycom07g01710 pycom07g01720
rosa_chinensis RchiOBHm_Chr1g0318291
rosa_laevigata RLG00000030548
rosa_multiflora Rmu_ssc0000308.1_g000005
rosa_roxburghii Rroxscaffold_4G00329450
rosa_rugosa Rorug01G0019900
rosa_samantha Rh1AG032100 Rh1BG027600 Rh1DG039400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 1 cut(s) 368
AgsI TTSAA 6 cut(s) 52, 133, 188, 469, 625, 668
AluBI AGCT 3 cut(s) 17, 290, 548
AluI AGCT 3 cut(s) 17, 290, 548
Alw26I GTCTC 2 cut(s) 126, 172
AlwNI CAGNNNCTG 1 cut(s) 548
ApeKI GCWGC 1 cut(s) 500
ApoI RAATTY 1 cut(s) 52
AseI ATTAAT 1 cut(s) 486
AsuHPI GGTGA 2 cut(s) 144, 449
BbvI GCAGC 1 cut(s) 512
BccI CCATC 3 cut(s) 83, 304, 580
BceAI ACGGC 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 126, 172
BfaI CTAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
BmsI GCATC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 315
BseMII CTCAG 2 cut(s) 167, 507
BseNI ACTGG 1 cut(s) 346
BseXI GCAGC 1 cut(s) 512
BsmAI GTCTC 2 cut(s) 126, 172
BspCNI CTCAG 2 cut(s) 168, 506
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 176, 493
BstF5I GGATG 1 cut(s) 315
BstMAI GTCTC 2 cut(s) 126, 172
BstNSI RCATGY 1 cut(s) 466
BstV1I GCAGC 1 cut(s) 512
BtsCI GGATG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 116
CaiI CAGNNNCTG 1 cut(s) 548
Csp6I GTAC 1 cut(s) 367
CviAII CATG 3 cut(s) 125, 242, 463
CviJI RGCY 8 cut(s) 17, 112, 164, 290, 364, 503, 548, 638
CviKI_1 RGCY 8 cut(s) 17, 112, 164, 290, 364, 503, 548, 638
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 176, 493
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 570
EcoT14I CCWWGG 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 3 cut(s) 128, 245, 466
FaiI YATR 6 cut(s) 126, 183, 243, 302, 325, 464
FalI AAGNNNNNCTT 4 cut(s) 96, 128, 353, 385
FatI CATG 3 cut(s) 124, 241, 462
Fnu4HI GCNGC 1 cut(s) 501
FokI GGATG 1 cut(s) 322
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 1 cut(s) 59
GluI GCNGC 1 cut(s) 501
Hin1II CATG 3 cut(s) 128, 245, 466
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 5 cut(s) 20, 133, 222, 356, 491
HphI GGTGA 2 cut(s) 144, 449
Hpy188I TCNGA 2 cut(s) 177, 221
Hpy188III TCNNGA 1 cut(s) 417
HpyAV CCTTC 2 cut(s) 165, 387
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 2 cut(s) 69, 500
HpyF3I CTNAG 2 cut(s) 176, 493
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 3 cut(s) 128, 245, 466
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 4 cut(s) 327, 372, 402, 624
Lsp1109I GCAGC 1 cut(s) 512
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 59
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 437
MboII GAAGA 6 cut(s) 41, 248, 563, 576, 595, 654
MluCI AATT 3 cut(s) 52, 444, 554
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 7 cut(s) 102, 246, 298, 466, 565, 586, 601
MseI TTAA 1 cut(s) 486
NlaIII CATG 3 cut(s) 128, 245, 466
NmuCI GTSAC 1 cut(s) 437
NspI RCATGY 1 cut(s) 466
PfeI GAWTC 4 cut(s) 20, 133, 222, 356
PkrI GCNGC 1 cut(s) 502
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
PshBI ATTAAT 1 cut(s) 486
PstNI CAGNNNCTG 1 cut(s) 548
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 1 cut(s) 501
SchI GAGTC 1 cut(s) 485
SfaNI GCATC 1 cut(s) 181
Sse9I AATT 3 cut(s) 52, 444, 554
SspMI CTAG 1 cut(s) 59
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 120
TaiI ACGT 1 cut(s) 444
TasI AATT 3 cut(s) 52, 444, 554
TfiI GAWTC 4 cut(s) 20, 133, 222, 356
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 3 cut(s) 138, 249, 272
TspRI CASTG 1 cut(s) 123
VspI ATTAAT 1 cut(s) 486
XapI RAATTY 1 cut(s) 52
XceI RCATGY 1 cut(s) 466
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.