Rroxscaffold_4G00329450

Protein BPS1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015679
Physical Location & Seq
Forward (+)
62763895 .. 62764858
964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00329450.1

Sequence Viewer

Length: 912 bp
ATGGTTCTCTTGTTACAAAAGATTGACAAACTCTACTCAAAGCTGGAGAATTACCACCACAACCACCACCACCACAATCACAACCATCAATCACAAGCCTTATCATCTTCTCTGGAGGCTTTTGAAACCCTTGTTTCCAATTCCTTTAACAAATTGTTTTCGAGCTCGAAATCAGCAGGATCTGAAGTTCCATCATTTCCATGGATCCAGCAGTGTTTTGAGCTCATACCCATCATCAGCAATGGTTTTGCAAAGCTAGTTGTGGCCATAGATTATCCCATGACTAAATGGGAAGCTGATTCTGTGGAAGAGTATCTCAAATACACCTTGAATTTGCTAGAGTTGTGCAACTCCATCACTTGCTTTCTTTCTCAATTTGGGAAAGAGAGGCTTTCACTGTCTCATGGTTTGAATCTTGTGGAGAGTTCATCACCTTCTTTGGCTGTGGAGCATCTGAGACAAATTCAAGTCCAACCAAAGAGTTTGAGCAAGGATTTCAGATTCCAAGGAAATGAAGAACATGGGAAAGAAAGGGGGATGGTGTTTTGGGTATGTGGGATTTTGATGACTGTTTTGGTTGGGGATTCCAAGCCATACTTGGAGATGAGAAAATCTGGTGGAAGCTTAGTAAGTTCATTGATTTCTGGATTGGATTTGAGTGTGGGTGAAGTAATTGTGGAGAGAAAAGGCATGTTGAAAGAGGTGAAAGAGATTAATGACTCAGTTGCAGCCCTTGTTTCTGCTATTGGGATTGGGAAAAAGAGTAAAGCAGAAGCTGAGGAATTACAGAGAAGATTAGAGGTGTTTGAGAAGATGGTGGAGGGTTTGGGAAAAGAGGTGGATTGTCTTTTCAATAAGGTTTTGGCTGGAAGAAATCTACTGCTCAATGGATTTCAACACCAAAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1 DUF241

Protein Analysis

303

Amino Acids

34.0

Weight (kDa)

6.68

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 187 - 296 5.6e-07 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01730
malus_domestica MD02G1301300.v1.1 MD07G1022600.v1.1 MD07G1022700.v1.1
prunus_persica Prupe.2G023200_v2.0.a1
pyrus_communis pycom02g25310 pycom07g01710 pycom07g01720
rosa_chinensis RchiOBHm_Chr1g0318291
rosa_laevigata RLG00000030548
rosa_multiflora Rmu_ssc0000308.1_g000005
rosa_roxburghii Rroxscaffold_4G00329450
rosa_rugosa Rorug01G0019900
rosa_samantha Rh1AG032100 Rh1BG027600 Rh1DG039400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 187, 199, 212
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 2 cut(s) 331, 462
AcuI CTGAAG 1 cut(s) 204
AgsI TTSAA 7 cut(s) 125, 331, 412, 467, 697, 853, 896
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 7 cut(s) 43, 165, 223, 256, 296, 624, 776
AluI AGCT 7 cut(s) 43, 165, 223, 256, 296, 624, 776
Alw21I GWGCWC 2 cut(s) 167, 225
Alw26I GTCTC 2 cut(s) 405, 451
AlwI GGATC 3 cut(s) 187, 199, 212
AlwNI CAGNNNCTG 2 cut(s) 182, 776
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 1 cut(s) 728
ApoI RAATTY 2 cut(s) 331, 462
AseI ATTAAT 1 cut(s) 714
AsuHPI GGTGA 3 cut(s) 423, 677, 715
BalI TGGCCA 1 cut(s) 266
BamHI GGATCC 1 cut(s) 204
BanII GRGCYC 2 cut(s) 167, 225
Bbv12I GWGCWC 2 cut(s) 167, 225
BbvCI CCTCAGC 1 cut(s) 777
BbvI GCAGC 1 cut(s) 740
BccI CCATC 6 cut(s) 93, 199, 239, 362, 532, 808
BcoDI GTCTC 2 cut(s) 405, 451
BfaI CTAG 2 cut(s) 257, 338
BisI GCNGC 1 cut(s) 729
BlsI GCNGC 1 cut(s) 730
BmiI GGNNCC 1 cut(s) 206
BmsI GCATC 1 cut(s) 460
BpmI CTGGAG 2 cut(s) 65, 134
Bpu10I CCTNAGC 1 cut(s) 777
BsaJI CCNNGG 2 cut(s) 200, 505
Bse3DI GCAATG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 200, 505
BseGI GGATG 1 cut(s) 543
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 3 cut(s) 446, 735, 768
BseXI GCAGC 1 cut(s) 740
BshFI GGCC 1 cut(s) 266
BsiHKAI GWGCWC 2 cut(s) 167, 225
BsmAI GTCTC 2 cut(s) 405, 451
BsnI GGCC 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 167, 225
Bsp143I GATC 2 cut(s) 179, 204
Bsp19I CCATGG 1 cut(s) 200
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 3 cut(s) 447, 734, 769
BspLI GGNNCC 1 cut(s) 206
BspPI GGATC 3 cut(s) 187, 199, 212
BsrDI GCAATG 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 200, 505
BssMI GATC 2 cut(s) 179, 204
BssT1I CCWWGG 2 cut(s) 200, 505
Bst4CI ACNGT 2 cut(s) 399, 571
Bst6I CTCTTC 1 cut(s) 303
BstDEI CTNAG 4 cut(s) 455, 625, 721, 777
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 1 cut(s) 543
BstKTI GATC 2 cut(s) 182, 207
BstMAI GTCTC 2 cut(s) 405, 451
BstMBI GATC 2 cut(s) 179, 204
BstNSI RCATGY 1 cut(s) 694
BstV1I GCAGC 1 cut(s) 740
BstX2I RGATCY 2 cut(s) 179, 204
BstYI RGATCY 2 cut(s) 179, 204
BsuRI GGCC 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 1 cut(s) 543
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 2 cut(s) 218, 395
CaiI CAGNNNCTG 2 cut(s) 182, 776
CviAII CATG 5 cut(s) 201, 280, 404, 521, 691
DdeI CTNAG 4 cut(s) 455, 625, 721, 777
DpnI GATC 2 cut(s) 181, 206
DpnII GATC 2 cut(s) 179, 204
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Ecl136II GAGCTC 2 cut(s) 165, 223
Eco130I CCWWGG 2 cut(s) 200, 505
Eco24I GRGCYC 2 cut(s) 167, 225
Eco53kI GAGCTC 2 cut(s) 165, 223
Eco57I CTGAAG 1 cut(s) 204
EcoICRI GAGCTC 2 cut(s) 165, 223
EcoT14I CCWWGG 2 cut(s) 200, 505
EcoT38I GRGCYC 2 cut(s) 167, 225
ErhI CCWWGG 2 cut(s) 200, 505
FaeI CATG 5 cut(s) 204, 283, 407, 524, 694
FaiI YATR 9 cut(s) 202, 227, 269, 281, 405, 522, 553, 595, 692
FalI AAGNNNNNCTT 4 cut(s) 375, 407, 581, 613
FatI CATG 5 cut(s) 200, 279, 403, 520, 690
Fnu4HI GCNGC 1 cut(s) 729
FokI GGATG 1 cut(s) 550
FriOI GRGCYC 2 cut(s) 167, 225
Fsp4HI GCNGC 1 cut(s) 729
FspBI CTAG 2 cut(s) 257, 338
GluI GCNGC 1 cut(s) 729
GsuI CTGGAG 2 cut(s) 65, 134
HaeIII GGCC 1 cut(s) 266
Hin1II CATG 5 cut(s) 204, 283, 407, 524, 694
HindIII AAGCTT 1 cut(s) 622
HinfI GANTC 5 cut(s) 299, 412, 501, 584, 719
HphI GGTGA 3 cut(s) 423, 677, 715
Hpy188I TCNGA 3 cut(s) 184, 456, 500
Hpy188III TCNNGA 2 cut(s) 113, 645
HpyAV CCTTC 1 cut(s) 444
HpyCH4III ACNGT 2 cut(s) 399, 571
HpyCH4V TGCA 3 cut(s) 251, 348, 728
HpyF3I CTNAG 4 cut(s) 455, 625, 721, 777
Hsp92II CATG 5 cut(s) 204, 283, 407, 524, 694
Kzo9I GATC 2 cut(s) 179, 204
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 7 cut(s) 29, 98, 162, 221, 600, 630, 852
Lsp1109I GCAGC 1 cut(s) 740
LweI GCATC 1 cut(s) 460
MaeI CTAG 2 cut(s) 257, 338
MaeIII GTNAC 1 cut(s) 12
MalI GATC 2 cut(s) 181, 206
MboI GATC 2 cut(s) 179, 204
MboII GAAGA 6 cut(s) 99, 320, 527, 804, 823, 882
MflI RGATCY 2 cut(s) 179, 204
MhlI GDGCHC 2 cut(s) 167, 225
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 8 cut(s) 49, 139, 152, 331, 374, 462, 672, 782
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 1 cut(s) 713
MmeI TCCRAC 1 cut(s) 496
MnlI CCTC 7 cut(s) 109, 381, 694, 772, 793, 814, 829
Mox20I TGGCCA 1 cut(s) 266
MscI TGGCCA 1 cut(s) 266
MseI TTAA 2 cut(s) 147, 714
MslI CAYNNNNRTG 1 cut(s) 199
Msp20I TGGCCA 1 cut(s) 266
NcoI CCATGG 1 cut(s) 200
NdeII GATC 2 cut(s) 179, 204
NlaIII CATG 5 cut(s) 204, 283, 407, 524, 694
NlaIV GGNNCC 1 cut(s) 206
NspI RCATGY 1 cut(s) 694
PfeI GAWTC 4 cut(s) 299, 412, 501, 584
PkrI GCNGC 1 cut(s) 730
PleI GAGTC 1 cut(s) 713
PpsI GAGTC 1 cut(s) 713
PshBI ATTAAT 1 cut(s) 714
Psp124BI GAGCTC 2 cut(s) 167, 225
PspN4I GGNNCC 1 cut(s) 206
PstNI CAGNNNCTG 2 cut(s) 182, 776
PsuI RGATCY 2 cut(s) 179, 204
RseI CAYNNNNRTG 1 cut(s) 199
SacI GAGCTC 2 cut(s) 167, 225
SaqAI TTAA 2 cut(s) 147, 714
SatI GCNGC 1 cut(s) 729
Sau3AI GATC 2 cut(s) 179, 204
SchI GAGTC 1 cut(s) 713
SduI GDGCHC 2 cut(s) 167, 225
SfaNI GCATC 1 cut(s) 460
SmiMI CAYNNNNRTG 1 cut(s) 199
Sse9I AATT 8 cut(s) 49, 139, 152, 331, 374, 462, 672, 782
SspMI CTAG 2 cut(s) 257, 338
SstI GAGCTC 2 cut(s) 167, 225
StyI CCWWGG 2 cut(s) 200, 505
TaaI ACNGT 2 cut(s) 399, 571
TaqI TCGA 2 cut(s) 161, 167
TasI AATT 8 cut(s) 49, 139, 152, 331, 374, 462, 672, 782
TfiI GAWTC 4 cut(s) 299, 412, 501, 584
Tru1I TTAA 2 cut(s) 147, 714
Tru9I TTAA 2 cut(s) 147, 714
TscAI CASTG 2 cut(s) 218, 402
TseI GCWGC 1 cut(s) 728
TspDTI ATGAA 3 cut(s) 417, 528, 624
TspRI CASTG 2 cut(s) 218, 402
VspI ATTAAT 1 cut(s) 714
XapI RAATTY 2 cut(s) 331, 462
XceI RCATGY 1 cut(s) 694
XcmI CCANNNNNNNNNTGG 2 cut(s) 198, 595
XspI CTAG 2 cut(s) 257, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.