MD02G1301300.v1.1

Protein BPS1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015679
Physical Location & Seq
Forward (+)
35590675 .. 35591628
954 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1301300.v1.1.491

Sequence Viewer

Length: 954 bp
ATGGTTCTCTTGTTGCAAAAGTTTAACCAAATCTGCACCAAGCTGGCGAATCACCACCACCACAACCACCACCCGTCGCAACCCGCCTTATCGGCATCTATGGAGGCCTTCCAAACCCATGTTTCAAATTCCCTGAAAAAATTGTTGCCCCTGAGTTCATCAAAATCTGCAGGATCAGAGATTCCATCATTTCCATGGATTCAGCAGTGTTTTGAGCTGGTGCCTATCATCCAAAGTGCTTTTGCAAAGCTGGTTGTGGAAGTAGACTTTCCCATGAGCAGATGGGAAGCTGCTTCTATGGATAGGTATCTCAAATACTCTTTGAGTCTGTTGGAGCTTTGCAATTCTGTCAGTTCTTCTCTGTCTAATCTCGGGAAGGCTAGGGTTTCCCTGGCTCATGGCTTGAGCCTGGTGGAGAATTCGTCGCCTTCTTCGGCTTTGGAGCATCTGAAGGCAATCCAATTCCAACCAAAGGGTTTGAGCAATGGAATCAGATTCCAAGGAAATGAAGAGGTTGGGAAAGGAAGTTGCTTGATTAGCAAGGAAACAGTGATTCATCAAGCTTTGGATATTATGCAGGGAATGGTATTTTGGGTGGGCGGGATTTTGATGTCTGGATTAGCTGGGAATCCCAAACCATACTTGGAGGTGAGGAATTCAAGTGGAAGGATTGTTGACCCGTTGCTTTCGGGGTTATATCCGAGACTGGATGAAATAATGGAGAGAAATGGTGGATTGAAGGAGGTGAAGGAGCTTAATGATGCAGTGGCGGGTCTTGCTGCGGCAATCAGAACTGGAAAAAACAGTGGAGCAGAAGCTGAGGAATTGAGAAGAAGATTAGAGGGGTTTGAGAAGTTCGTGGATGGTTTGGGAAAGGAGGTGGATTCCGTCTTCGACAAGGTTTTGGCTGGGAGAAATCAATTGCTCAATGGCCTTCCACAGCAGAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1 DUF241

Protein Analysis

318

Amino Acids

34.67

Weight (kDa)

8.59

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01730
malus_domestica MD02G1301300.v1.1 MD07G1022600.v1.1 MD07G1022700.v1.1
prunus_persica Prupe.2G023200_v2.0.a1
pyrus_communis pycom02g25310 pycom07g01710 pycom07g01720
rosa_chinensis RchiOBHm_Chr1g0318291
rosa_laevigata RLG00000030548
rosa_multiflora Rmu_ssc0000308.1_g000005
rosa_roxburghii Rroxscaffold_4G00329450
rosa_rugosa Rorug01G0019900
rosa_samantha Rh1AG032100 Rh1BG027600 Rh1DG039400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 264
AciI CCGC 4 cut(s) 84, 600, 770, 782
AclWI GGATC 1 cut(s) 181
AcsI RAATTY 3 cut(s) 127, 418, 655
AcuI CTGAAG 1 cut(s) 470
AfiI CCNNNNNNNGG 1 cut(s) 472
AgsI TTSAA 3 cut(s) 126, 660, 739
AjnI CCWGG 2 cut(s) 390, 408
AjuI GAANNNNNNNTTGG 2 cut(s) 574, 606
AluBI AGCT 9 cut(s) 43, 217, 250, 290, 337, 563, 623, 754, 818
AluI AGCT 9 cut(s) 43, 217, 250, 290, 337, 563, 623, 754, 818
Alw26I GTCTC 1 cut(s) 697
AlwI GGATC 1 cut(s) 181
AlwNI CAGNNNCTG 1 cut(s) 818
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 2 cut(s) 105, 931
ApeKI GCWGC 2 cut(s) 290, 779
ApoI RAATTY 3 cut(s) 127, 418, 655
AsuHPI GGTGA 3 cut(s) 44, 661, 757
AvaI CYCGRG 1 cut(s) 371
BanI GGYRCC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 883
BbvCI CCTCAGC 1 cut(s) 819
BbvI GCAGC 2 cut(s) 277, 766
BccI CCATC 3 cut(s) 193, 276, 857
BciT130I CCWGG 2 cut(s) 392, 410
BcoDI GTCTC 1 cut(s) 697
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 3 cut(s) 291, 780, 783
BlsI GCNGC 3 cut(s) 292, 781, 784
Bme1390I CCNGG 2 cut(s) 392, 410
BmeT110I CYCGRG 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 2 cut(s) 392, 410
BmsI GCATC 3 cut(s) 104, 454, 751
BpiI GAAGAC 1 cut(s) 883
Bpu10I CCTNAGC 1 cut(s) 819
BpuEI CTTGAG 1 cut(s) 424
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 3 cut(s) 194, 390, 499
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse1I ACTGG 2 cut(s) 711, 799
Bse3DI GCAATG 1 cut(s) 490
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 2 cut(s) 392, 410
BseDI CCNNGG 3 cut(s) 194, 390, 499
BseGI GGATG 3 cut(s) 228, 715, 868
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 2 cut(s) 143, 810
BseNI ACTGG 2 cut(s) 711, 799
BseXI GCAGC 2 cut(s) 277, 766
BseYI CCCAGC 2 cut(s) 623, 908
BsgI GTGCAG 1 cut(s) 19
BshFI GGCC 2 cut(s) 107, 933
BshNI GGYRCC 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 472
BsmAI GTCTC 1 cut(s) 697
BsnI GGCC 2 cut(s) 107, 933
BsoBI CYCGRG 1 cut(s) 371
Bsp143I GATC 1 cut(s) 173
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 4 cut(s) 84, 600, 770, 782
BspANI GGCC 2 cut(s) 107, 933
BspCNI CTCAG 2 cut(s) 144, 811
BspLI GGNNCC 1 cut(s) 222
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 490
BsrI ACTGG 2 cut(s) 711, 799
BssECI CCNNGG 3 cut(s) 194, 390, 499
BssMI GATC 1 cut(s) 173
BssT1I CCWWGG 2 cut(s) 194, 499
Bst2UI CCWGG 2 cut(s) 392, 410
Bst4CI ACNGT 2 cut(s) 550, 806
Bst6I CTCTTC 1 cut(s) 504
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 152, 819
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 3 cut(s) 228, 715, 868
BstKTI GATC 1 cut(s) 176
BstMAI GTCTC 1 cut(s) 697
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 3 cut(s) 92, 537, 776
BstNI CCWGG 2 cut(s) 392, 410
BstSCI CCNGG 2 cut(s) 390, 408
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 277, 766
BstV2I GAAGAC 1 cut(s) 883
BsuRI GGCC 2 cut(s) 107, 933
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 3 cut(s) 228, 715, 868
BtsI GCAGTG 2 cut(s) 212, 771
BtsIMutI CAGTG 4 cut(s) 212, 555, 771, 811
Cac8I GCNNGC 1 cut(s) 45
CaiI CAGNNNCTG 1 cut(s) 818
CviAII CATG 4 cut(s) 119, 195, 274, 398
DdeI CTNAG 2 cut(s) 152, 819
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Eco130I CCWWGG 2 cut(s) 194, 499
Eco147I AGGCCT 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 371
EcoRI GAATTC 2 cut(s) 418, 655
EcoRII CCWGG 2 cut(s) 390, 408
EcoT14I CCWWGG 2 cut(s) 194, 499
ErhI CCWWGG 2 cut(s) 194, 499
FaeI CATG 4 cut(s) 122, 198, 277, 401
FaiI YATR 9 cut(s) 101, 120, 196, 275, 299, 399, 575, 640, 697
FatI CATG 4 cut(s) 118, 194, 273, 397
FauI CCCGC 3 cut(s) 91, 593, 763
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 3 cut(s) 291, 780, 783
FokI GGATG 3 cut(s) 215, 722, 875
Fsp4HI GCNGC 3 cut(s) 291, 780, 783
FspBI CTAG 1 cut(s) 381
GluI GCNGC 3 cut(s) 291, 780, 783
GsaI CCCAGC 2 cut(s) 627, 912
HaeIII GGCC 2 cut(s) 107, 933
Hin1II CATG 4 cut(s) 122, 198, 277, 401
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 9 cut(s) 49, 181, 199, 325, 489, 495, 553, 628, 884
HphI GGTGA 3 cut(s) 44, 661, 757
Hpy166II GTNNAC 2 cut(s) 265, 676
Hpy188I TCNGA 5 cut(s) 178, 450, 494, 702, 791
Hpy188III TCNNGA 2 cut(s) 373, 615
Hpy8I GTNNAC 2 cut(s) 265, 676
Hpy99I CGWCG 2 cut(s) 79, 427
HpyAV CCTTC 8 cut(s) 118, 370, 438, 445, 660, 733, 742, 944
HpyCH4III ACNGT 2 cut(s) 550, 806
HpyCH4V TGCA 7 cut(s) 16, 36, 170, 245, 342, 577, 764
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 537, 776
HpyF3I CTNAG 2 cut(s) 152, 819
Hsp92II CATG 4 cut(s) 122, 198, 277, 401
Kzo9I GATC 1 cut(s) 173
LmnI GCTCC 4 cut(s) 334, 442, 751, 809
Lsp1109I GCAGC 2 cut(s) 277, 766
LweI GCATC 3 cut(s) 104, 454, 751
MaeI CTAG 1 cut(s) 381
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MboII GAAGA 6 cut(s) 348, 423, 521, 843, 846, 883
MfeI CAATTG 1 cut(s) 920
MluCI AATT 8 cut(s) 127, 140, 343, 418, 461, 655, 824, 920
MlyI GAGTC 1 cut(s) 334
MmeI TCCRAC 2 cut(s) 312, 490
MnlI CCTC 8 cut(s) 97, 505, 640, 645, 736, 814, 835, 871
MseI TTAA 2 cut(s) 24, 756
MslI CAYNNNNRTG 1 cut(s) 193
MspR9I CCNGG 2 cut(s) 392, 410
MunI CAATTG 1 cut(s) 920
MvaI CCWGG 2 cut(s) 392, 410
MwoI GCNNNNNNNGC 3 cut(s) 92, 537, 776
NcoI CCATGG 1 cut(s) 194
NdeII GATC 1 cut(s) 173
NlaIII CATG 4 cut(s) 122, 198, 277, 401
NlaIV GGNNCC 1 cut(s) 222
PceI AGGCCT 1 cut(s) 107
PfeI GAWTC 8 cut(s) 49, 181, 199, 489, 495, 553, 628, 884
PkrI GCNGC 3 cut(s) 292, 781, 784
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
Psp6I CCWGG 2 cut(s) 390, 408
PspFI CCCAGC 2 cut(s) 623, 908
PspGI CCWGG 2 cut(s) 390, 408
PspN4I GGNNCC 1 cut(s) 222
PstI CTGCAG 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 818
RseI CAYNNNNRTG 1 cut(s) 193
SaqAI TTAA 2 cut(s) 24, 756
SatI GCNGC 3 cut(s) 291, 780, 783
Sau3AI GATC 1 cut(s) 173
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 2 cut(s) 392, 410
SfaNI GCATC 3 cut(s) 104, 454, 751
SfcI CTRYAG 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
Sse9I AATT 8 cut(s) 127, 140, 343, 418, 461, 655, 824, 920
SseBI AGGCCT 1 cut(s) 107
SsiI CCGC 4 cut(s) 84, 600, 770, 782
SspMI CTAG 1 cut(s) 381
StuI AGGCCT 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 390, 408
StyI CCWWGG 2 cut(s) 194, 499
TaaI ACNGT 2 cut(s) 550, 806
TaqI TCGA 1 cut(s) 894
TasI AATT 8 cut(s) 127, 140, 343, 418, 461, 655, 824, 920
TauI GCSGC 1 cut(s) 785
TfiI GAWTC 8 cut(s) 49, 181, 199, 489, 495, 553, 628, 884
Tru1I TTAA 2 cut(s) 24, 756
Tru9I TTAA 2 cut(s) 24, 756
TscAI CASTG 4 cut(s) 212, 555, 771, 811
TseI GCWGC 2 cut(s) 290, 779
TspDTI ATGAA 4 cut(s) 147, 522, 545, 726
TspGWI ACGGA 1 cut(s) 877
TspRI CASTG 4 cut(s) 212, 555, 771, 811
XapI RAATTY 3 cut(s) 127, 418, 655
XcmI CCANNNNNNNNNTGG 2 cut(s) 192, 640
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.