MD07G1022600.v1.1

Protein BPS1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015679
Physical Location & Seq
Reverse (-)
1881522 .. 1882545
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1022600.v1.1.491

Sequence Viewer

Length: 963 bp
ATGGTTCTCTTGGTGCAAAAGTTTAACCAAATCTACTCCAAGCTGGATAATCACCTCCACCACCACCACAACCACCACCAACCGTCGGAACCCGCCTTATCGGCATCTCTGGATGCCTTCCAAACCCATGTTTCAAACTCCTTGAAAAAGTTGTTGCCTCTGAGTTCATCAAAATCTGCAGGGTCAGATATTCCATCATTTCCATGGATTCTACAGTGCTTTGAGCTGCTAACCGTCGTCCAAAGTGCTTTTGCAAAGCTGGTTGTGGAAGTAGATTTTCCCATGAGCAGATGGGAAGCTGCTTCTGTGGATGAGTATCTCAAATACAGTTTGAGTTTGTTGGAGCTTTGCAATTCTGTCAGTTCTTCTCTGTCTAATCTTGGGAAGGCTAAGGTTTCCCTGGCTCATGGTTTGAGCCTTGTGGAGAAATCGTCGCCTTCTTCGGCTTTGGAGCATCTGAAGGCAGTCCAATTCCAACCAAAGGGTTTGAGCAACGGAATCAGATTCCAAGGAAATGAAGAGGTTGGGAAAGGAAGTTGCTTGATTAGCAAGGAAACAGTGATTCATCAAGCTTTGGAGGTTATGCAGGGAATGGTATTCTGGCTAGGTGGGATTTTGATGTCTGGTTTAGCCGGGAATCCCGAGCCATACTTGGAGGTGAGGAATTCGGGTGGAAGGTTTGTTGACTCGTTGCTTTTGGGGTTGAATTCGGGAGTGAGTGAAATAATGGAGAGAAATGGTGGTTTGAAGGAGGTGAAGGAGCTTAATGATGCAGTGACGGGCCTTGCTGCGGCAATAGGAATTGGAAAGAACAGCGGAGCAGAAGCTGAGGAATTGAGAAGAAAACTAGAGGTGTTTGAGAAGTTTGTGGACGGTTTGGGAAAGGAGGTGGATTCCGTCTTTGACAAGGTTTTGGCTGGGAGAAATCAATTGCTCAATGCCCTTCCACAGCAAAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1 DUF241

Protein Analysis

321

Amino Acids

34.77

Weight (kDa)

6.42

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 23 - 126 4.3e-06 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01730
malus_domestica MD02G1301300.v1.1 MD07G1022600.v1.1 MD07G1022700.v1.1
prunus_persica Prupe.2G023200_v2.0.a1
pyrus_communis pycom02g25310 pycom07g01710 pycom07g01720
rosa_chinensis RchiOBHm_Chr1g0318291
rosa_laevigata RLG00000030548
rosa_multiflora Rmu_ssc0000308.1_g000005
rosa_roxburghii Rroxscaffold_4G00329450
rosa_rugosa Rorug01G0019900
rosa_samantha Rh1AG032100 Rh1BG027600 Rh1DG039400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 93, 791, 816
AcsI RAATTY 2 cut(s) 664, 706
AcuI CTGAAG 1 cut(s) 479
AfiI CCNNNNNNNGG 3 cut(s) 85, 481, 790
AgsI TTSAA 4 cut(s) 135, 145, 706, 748
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 8 cut(s) 43, 226, 259, 299, 346, 572, 763, 827
AluI AGCT 8 cut(s) 43, 226, 259, 299, 346, 572, 763, 827
AlwNI CAGNNNCTG 1 cut(s) 827
Ama87I CYCGRG 1 cut(s) 641
AoxI GGCC 1 cut(s) 781
ApeKI GCWGC 3 cut(s) 226, 299, 788
ApoI RAATTY 2 cut(s) 664, 706
AspS9I GGNCC 1 cut(s) 781
AsuC2I CCSGG 1 cut(s) 634
AsuHPI GGTGA 3 cut(s) 44, 670, 766
AvaI CYCGRG 1 cut(s) 641
BbvCI CCTCAGC 1 cut(s) 828
BbvI GCAGC 3 cut(s) 213, 286, 775
BccI CCATC 2 cut(s) 202, 285
BciT130I CCWGG 1 cut(s) 401
BcnI CCSGG 1 cut(s) 634
BfaI CTAG 2 cut(s) 605, 848
BfmI CTRYAG 2 cut(s) 177, 212
BglI GCCNNNNNGGC 1 cut(s) 101
BisI GCNGC 4 cut(s) 227, 300, 789, 792
BlsI GCNGC 4 cut(s) 228, 301, 790, 793
Bme1390I CCNGG 2 cut(s) 401, 634
BmeT110I CYCGRG 1 cut(s) 641
BmgT120I GGNCC 1 cut(s) 781
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 2 cut(s) 401, 634
BmsI GCATC 4 cut(s) 103, 113, 463, 760
Bpu10I CCTNAGC 2 cut(s) 390, 828
BpuMI CCSGG 1 cut(s) 634
BsaBI GATNNNNATC 1 cut(s) 315
BsaJI CCNNGG 3 cut(s) 203, 399, 508
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 481, 790
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 3 cut(s) 203, 399, 508
BseGI GGATG 2 cut(s) 118, 316
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 3 cut(s) 85, 481, 790
BseMII CTCAG 2 cut(s) 152, 819
BseXI GCAGC 3 cut(s) 213, 286, 775
BseYI CCCAGC 1 cut(s) 917
BshFI GGCC 1 cut(s) 783
BsiHKCI CYCGRG 1 cut(s) 641
BsiSI CCGG 1 cut(s) 633
BslI CCNNNNNNNGG 3 cut(s) 85, 481, 790
BsnI GGCC 1 cut(s) 783
BsoBI CYCGRG 1 cut(s) 641
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 3 cut(s) 93, 791, 816
BspANI GGCC 1 cut(s) 783
BspCNI CTCAG 2 cut(s) 153, 820
BspLI GGNNCC 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 181
BssECI CCNNGG 3 cut(s) 203, 399, 508
BssT1I CCWWGG 2 cut(s) 203, 508
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 6 cut(s) 84, 216, 235, 329, 559, 875
Bst6I CTCTTC 1 cut(s) 513
BstDEI CTNAG 3 cut(s) 161, 390, 828
BstDSI CCRYGG 1 cut(s) 203
BstF5I GGATG 2 cut(s) 118, 316
BstMWI GCNNNNNNNGC 2 cut(s) 101, 546
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 399, 632
BstSFI CTRYAG 2 cut(s) 177, 212
BstV1I GCAGC 3 cut(s) 213, 286, 775
BsuRI GGCC 1 cut(s) 783
BtgI CCRYGG 1 cut(s) 203
BtsCI GGATG 2 cut(s) 118, 316
BtsI GCAGTG 1 cut(s) 780
BtsIMutI CAGTG 3 cut(s) 221, 564, 780
CaiI CAGNNNCTG 1 cut(s) 827
Cfr13I GGNCC 1 cut(s) 781
CviAII CATG 4 cut(s) 128, 204, 283, 407
DdeI CTNAG 3 cut(s) 161, 390, 828
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco130I CCWWGG 2 cut(s) 203, 508
Eco57I CTGAAG 1 cut(s) 479
Eco88I CYCGRG 1 cut(s) 641
EcoRI GAATTC 2 cut(s) 664, 706
EcoRII CCWGG 1 cut(s) 399
EcoT14I CCWWGG 2 cut(s) 203, 508
ErhI CCWWGG 2 cut(s) 203, 508
FaeI CATG 4 cut(s) 131, 207, 286, 410
FaiI YATR 6 cut(s) 129, 205, 284, 408, 584, 649
FatI CATG 4 cut(s) 127, 203, 282, 406
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 4 cut(s) 227, 300, 789, 792
FokI GGATG 2 cut(s) 125, 323
Fsp4HI GCNGC 4 cut(s) 227, 300, 789, 792
FspBI CTAG 2 cut(s) 605, 848
GluI GCNGC 4 cut(s) 227, 300, 789, 792
GsaI CCCAGC 1 cut(s) 921
HaeIII GGCC 1 cut(s) 783
HapII CCGG 1 cut(s) 633
Hin1II CATG 4 cut(s) 131, 207, 286, 410
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 7 cut(s) 208, 498, 504, 562, 637, 686, 893
HpaII CCGG 1 cut(s) 633
HphI GGTGA 3 cut(s) 44, 670, 766
Hpy166II GTNNAC 2 cut(s) 685, 871
Hpy188I TCNGA 5 cut(s) 88, 162, 187, 459, 503
Hpy188III TCNNGA 3 cut(s) 110, 641, 711
Hpy8I GTNNAC 2 cut(s) 685, 871
Hpy99I CGWCG 3 cut(s) 88, 239, 436
HpyAV CCTTC 8 cut(s) 127, 379, 447, 454, 669, 742, 751, 953
HpyCH4III ACNGT 6 cut(s) 84, 216, 235, 329, 559, 875
HpyCH4V TGCA 6 cut(s) 16, 179, 254, 351, 586, 773
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 546
HpyF3I CTNAG 3 cut(s) 161, 390, 828
Hsp92II CATG 4 cut(s) 131, 207, 286, 410
LmnI GCTCC 4 cut(s) 343, 451, 760, 818
Lsp1109I GCAGC 3 cut(s) 213, 286, 775
LweI GCATC 4 cut(s) 103, 113, 463, 760
MaeI CTAG 2 cut(s) 605, 848
MaeIII GTNAC 1 cut(s) 775
MboII GAAGA 4 cut(s) 357, 432, 530, 852
MfeI CAATTG 1 cut(s) 929
MluCI AATT 7 cut(s) 352, 470, 664, 706, 801, 833, 929
MlyI GAGTC 1 cut(s) 680
MmeI TCCRAC 3 cut(s) 66, 321, 499
MseI TTAA 2 cut(s) 24, 765
MslI CAYNNNNRTG 1 cut(s) 202
MspA1I CMGCKG 1 cut(s) 816
MspI CCGG 1 cut(s) 633
MspR9I CCNGG 2 cut(s) 401, 634
MunI CAATTG 1 cut(s) 929
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 2 cut(s) 101, 546
NciI CCSGG 1 cut(s) 634
NcoI CCATGG 1 cut(s) 203
NlaIII CATG 4 cut(s) 131, 207, 286, 410
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 775
PfeI GAWTC 6 cut(s) 208, 498, 504, 562, 637, 893
PkrI GCNGC 4 cut(s) 228, 301, 790, 793
PleI GAGTC 1 cut(s) 680
PpsI GAGTC 1 cut(s) 680
Psp6I CCWGG 1 cut(s) 399
PspFI CCCAGC 1 cut(s) 917
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 781
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 827
RseI CAYNNNNRTG 1 cut(s) 202
SaqAI TTAA 2 cut(s) 24, 765
SatI GCNGC 4 cut(s) 227, 300, 789, 792
Sau96I GGNCC 1 cut(s) 781
SchI GAGTC 1 cut(s) 680
ScrFI CCNGG 2 cut(s) 401, 634
SfaNI GCATC 4 cut(s) 103, 113, 463, 760
SfcI CTRYAG 2 cut(s) 177, 212
SmiMI CAYNNNNRTG 1 cut(s) 202
Sse9I AATT 7 cut(s) 352, 470, 664, 706, 801, 833, 929
SsiI CCGC 3 cut(s) 93, 791, 816
SspMI CTAG 2 cut(s) 605, 848
StyD4I CCNGG 2 cut(s) 399, 632
StyI CCWWGG 2 cut(s) 203, 508
TaaI ACNGT 6 cut(s) 84, 216, 235, 329, 559, 875
TasI AATT 7 cut(s) 352, 470, 664, 706, 801, 833, 929
TauI GCSGC 1 cut(s) 794
TfiI GAWTC 6 cut(s) 208, 498, 504, 562, 637, 893
Tru1I TTAA 2 cut(s) 24, 765
Tru9I TTAA 2 cut(s) 24, 765
TscAI CASTG 3 cut(s) 221, 564, 780
TseFI GTSAC 1 cut(s) 775
TseI GCWGC 3 cut(s) 226, 299, 788
Tsp45I GTSAC 1 cut(s) 775
TspDTI ATGAA 3 cut(s) 156, 531, 554
TspGWI ACGGA 2 cut(s) 510, 886
TspRI CASTG 3 cut(s) 221, 564, 780
XapI RAATTY 2 cut(s) 664, 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 201
XspI CTAG 2 cut(s) 605, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.