Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003714

Physical Location & Seq

Genomic Coordinates Reverse (-)

3265438 .. 3269410

Gene Structure 3973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0019900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAAAGCTGTTCTTCAAAATCAGTCGTCGTACTACATGGCCCAACAAGCACTTCGGCAACCGAGTTGGAGCTTATTATCAGGAGGCTCCCTTGTTTCATTCACTAGAGGGCATAATTTGGTGCGGCAGAGCTCACGGCTTCAGTTACCTTCACCTTCACGCAATCTAGTTGTTAAGGCGGTTGCTACTCCAGATTCAGCCGTGGAATTACCATTGACTGCAGAAAATGTGGAAAGTGTATTAGATGAAATCCGCCCATATCTCATTTCTGATGGGGGGAATGTGGCATTACATGAAATTGATGGCAATATAGTGCGGTTAAAGCTACAAGGAGCATGTGGATCATGTCCGAGCTCTGTTATGACAATGAAAATGGGTATTGAGCGTCGTTTAATGGAAAAAATCCCTGAAATAGTTGCTGTGGAACCAATAGCAGATGAAGAAACAGGCCTTGAGCTGAATGAAGAAAATATAGAGAAGGTACTTGAAGAAATTAGACCCTACTTAGTAGGGGCAGCAGGTGGATCTCTAGAACTTGTGGCAATCGATGAGCCTATAGTCAAAGTCCGGATCACAGGTCCTGCTGCTGGGGTGATGACTGTTAGAGTTGCTGTCACACAGAAATTGCGTGAGAAAATCCCTACCATCGCAGCAGTTCAACTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1 DUF241

Protein Analysis

222

Amino Acids

24.02

Weight (kDa)

5.37

Isoelectric Point (pI)

62.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU	PF01106	77 - 142	2.2e-27	NifU-like domain
NifU	PF01106	158 - 219	4.5e-12	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13790 AT5G13790
fragaria_vesca	FvH4_7g01720 FvH4_7g01720 FvH4_7g01720 FvH4_7g01720
malus_domestica	MD00G1004500.v1.1 MD01G1193800.v1.1 MD02G1301400.v1.1 MD07G1022500.v1.1
prunus_persica	Prupe.2G023100_v2.0.a1 Prupe.2G023100_v2.0.a1
pyrus_communis	pycom02g25320 pycom07g01690
rosa_chinensis	RchiOBHm_Chr0c22g0500511 RchiOBHm_Chr1g0318281 RchiOBHm_Chr7g0204181 RchiOBHm_Chr7g0206821 RchiOBHm_Chr7g0207131
rosa_laevigata	RLG00000030549
rosa_multiflora	Rmu_ssc0000308.1_g000004
rosa_roxburghii	Rroxscaffold_4G00329440 Rroxscaffold_4G00329720
rosa_rugosa	Rorug01G0019900 Rorug01G0019900
rosa_samantha	Rh1AG032000 Rh1BG027500 Rh1CG030400 Rh1CG044100 Rh1DG039500 Rh3AG323900 Rh3BG361900 Rh4CG066600
rosa_wichuraiana	Rw1G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	509
Acc36I	ACCTGC	1 cut(s)	509
AccIII	TCCGGA	1 cut(s)	567
AciI	CCGC	4 cut(s)	124, 179, 253, 316
AclWI	GGATC	3 cut(s)	349, 532, 578
AcuI	CTGAAG	1 cut(s)	125
AfaI	GTAC	2 cut(s)	32, 483
AfiI	CCNNNNNNNGG	1 cut(s)	587
AgsI	TTSAA	3 cut(s)	17, 488, 659
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AluBI	AGCT	6 cut(s)	8, 72, 132, 325, 354, 457
AluI	AGCT	6 cut(s)	8, 72, 132, 325, 354, 457
Alw21I	GWGCWC	2 cut(s)	134, 356
AlwI	GGATC	3 cut(s)	349, 532, 578
AlwNI	CAGNNNCTG	1 cut(s)	581
Aor13HI	TCCGGA	1 cut(s)	567
AoxI	GGCC	2 cut(s)	39, 448
ApeKI	GCWGC	3 cut(s)	515, 584, 650
AspS9I	GGNCC	2 cut(s)	40, 578
AsuHPI	GGTGA	2 cut(s)	144, 604
AvaII	GGWCC	1 cut(s)	578
BanII	GRGCYC	2 cut(s)	134, 356
Bbv12I	GWGCWC	2 cut(s)	134, 356
BbvI	GCAGC	3 cut(s)	527, 571, 662
BccI	CCATC	3 cut(s)	266, 296, 653
BceAI	ACGGC	2 cut(s)	152, 185
BfaI	CTAG	3 cut(s)	105, 167, 530
BfmI	CTRYAG	2 cut(s)	219, 555
BfuAI	ACCTGC	1 cut(s)	509
BisI	GCNGC	4 cut(s)	125, 516, 585, 651
BlsI	GCNGC	4 cut(s)	126, 517, 586, 652
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	2 cut(s)	40, 578
BmiI	GGNNCC	2 cut(s)	88, 426
BpmI	CTGGAG	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	473
Bsa29I	ATCGAT	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
BseAI	TCCGGA	1 cut(s)	567
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseXI	GCAGC	3 cut(s)	527, 571, 662
BseYI	CCCAGC	1 cut(s)	587
BshFI	GGCC	2 cut(s)	41, 450
BshVI	ATCGAT	1 cut(s)	546
BsiHKAI	GWGCWC	2 cut(s)	134, 356
BsiSI	CCGG	1 cut(s)	568
BslI	CCNNNNNNNGG	1 cut(s)	587
BsnI	GGCC	2 cut(s)	41, 450
Bsp1286I	GDGCHC	2 cut(s)	134, 356
Bsp13I	TCCGGA	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	341, 524, 570
BspACI	CCGC	4 cut(s)	124, 179, 253, 316
BspANI	GGCC	2 cut(s)	41, 450
BspDI	ATCGAT	1 cut(s)	546
BspEI	TCCGGA	1 cut(s)	567
BspLI	GGNNCC	2 cut(s)	88, 426
BspMAI	CTGCAG	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	509
BspPI	GGATC	3 cut(s)	349, 532, 578
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	3 cut(s)	341, 524, 570
Bst4CI	ACNGT	2 cut(s)	601, 666
BstDEI	CTNAG	1 cut(s)	505
BstDSI	CCRYGG	1 cut(s)	201
BstKTI	GATC	3 cut(s)	344, 527, 573
BstMBI	GATC	3 cut(s)	341, 524, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 322
BstNSI	RCATGY	1 cut(s)	339
BstSFI	CTRYAG	2 cut(s)	219, 555
BstV1I	GCAGC	3 cut(s)	527, 571, 662
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
Bsu15I	ATCGAT	1 cut(s)	546
BsuRI	GGCC	2 cut(s)	41, 450
BsuTUI	ATCGAT	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	631
BveI	ACCTGC	1 cut(s)	509
CaiI	CAGNNNCTG	1 cut(s)	581
Cfr13I	GGNCC	2 cut(s)	40, 578
ClaI	ATCGAT	1 cut(s)	546
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	31, 482
CviAII	CATG	4 cut(s)	37, 293, 336, 345
CviQI	GTAC	2 cut(s)	31, 482
DdeI	CTNAG	1 cut(s)	505
DpnI	GATC	3 cut(s)	343, 526, 572
DpnII	GATC	3 cut(s)	341, 524, 570
EciI	GGCGGA	1 cut(s)	242
Ecl136II	GAGCTC	2 cut(s)	132, 354
Eco147I	AGGCCT	1 cut(s)	450
Eco24I	GRGCYC	2 cut(s)	134, 356
Eco47I	GGWCC	1 cut(s)	578
Eco53kI	GAGCTC	2 cut(s)	132, 354
Eco57I	CTGAAG	1 cut(s)	125
EcoICRI	GAGCTC	2 cut(s)	132, 354
EcoO109I	RGGNCCY	1 cut(s)	578
EcoT38I	GRGCYC	2 cut(s)	134, 356
FaeI	CATG	4 cut(s)	40, 296, 339, 348
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	4 cut(s)	36, 292, 335, 344
Fnu4HI	GCNGC	4 cut(s)	125, 516, 585, 651
FriOI	GRGCYC	2 cut(s)	134, 356
Fsp4HI	GCNGC	4 cut(s)	125, 516, 585, 651
FspBI	CTAG	3 cut(s)	105, 167, 530
GluI	GCNGC	4 cut(s)	125, 516, 585, 651
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	41, 450
HapII	CCGG	1 cut(s)	568
HgaI	GACGC	1 cut(s)	374
Hin1II	CATG	4 cut(s)	40, 296, 339, 348
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	1 cut(s)	568
HphI	GGTGA	2 cut(s)	144, 604
Hpy188I	TCNGA	2 cut(s)	271, 351
Hpy188III	TCNNGA	4 cut(s)	81, 191, 530, 568
Hpy99I	CGWCG	2 cut(s)	31, 390
HpyAV	CCTTC	3 cut(s)	159, 165, 472
HpyCH4III	ACNGT	2 cut(s)	601, 666
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 322
HpyF3I	CTNAG	1 cut(s)	505
Hsp92II	CATG	4 cut(s)	40, 296, 339, 348
Kpn2I	TCCGGA	1 cut(s)	567
Kzo9I	GATC	3 cut(s)	341, 524, 570
LmnI	GCTCC	3 cut(s)	69, 92, 332
LpnPI	CCDG	9 cut(s)	66, 204, 420, 432, 504, 561, 573, 581, 594
Lsp1109I	GCAGC	3 cut(s)	527, 571, 662
MaeI	CTAG	3 cut(s)	105, 167, 530
MaeIII	GTNAC	2 cut(s)	144, 613
MalI	GATC	3 cut(s)	343, 526, 572
MboI	GATC	3 cut(s)	341, 524, 570
MboII	GAAGA	4 cut(s)	5, 452, 476, 500
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	2 cut(s)	134, 356
MluCI	AATT	5 cut(s)	115, 206, 297, 492, 623
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	2 cut(s)	77, 101
MroI	TCCGGA	1 cut(s)	567
MseI	TTAA	3 cut(s)	174, 320, 392
MspI	CCGG	1 cut(s)	568
MwoI	GCNNNNNNNGC	2 cut(s)	47, 322
NdeII	GATC	3 cut(s)	341, 524, 570
NlaIII	CATG	4 cut(s)	40, 296, 339, 348
NlaIV	GGNNCC	2 cut(s)	88, 426
NmuCI	GTSAC	1 cut(s)	613
NspI	RCATGY	1 cut(s)	339
PaqCI	CACCTGC	1 cut(s)	509
PceI	AGGCCT	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	4 cut(s)	126, 517, 586, 652
PpuMI	RGGWCCY	1 cut(s)	578
Psp124BI	GAGCTC	2 cut(s)	134, 356
Psp5II	RGGWCCY	1 cut(s)	578
PspFI	CCCAGC	1 cut(s)	587
PspN4I	GGNNCC	2 cut(s)	88, 426
PspPI	GGNCC	2 cut(s)	40, 578
PspPPI	RGGWCCY	1 cut(s)	578
PstI	CTGCAG	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	524
RsaI	GTAC	2 cut(s)	32, 483
RsaNI	GTAC	2 cut(s)	31, 482
SacI	GAGCTC	2 cut(s)	134, 356
SaqAI	TTAA	3 cut(s)	174, 320, 392
SatI	GCNGC	4 cut(s)	125, 516, 585, 651
Sau3AI	GATC	3 cut(s)	341, 524, 570
Sau96I	GGNCC	2 cut(s)	40, 578
SduI	GDGCHC	2 cut(s)	134, 356
SfcI	CTRYAG	2 cut(s)	219, 555
SinI	GGWCC	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	5 cut(s)	115, 206, 297, 492, 623
SseBI	AGGCCT	1 cut(s)	450
SsiI	CCGC	4 cut(s)	124, 179, 253, 316
SspMI	CTAG	3 cut(s)	105, 167, 530
SstI	GAGCTC	2 cut(s)	134, 356
StuI	AGGCCT	1 cut(s)	450
TaaI	ACNGT	2 cut(s)	601, 666
TaqI	TCGA	1 cut(s)	546
TasI	AATT	5 cut(s)	115, 206, 297, 492, 623
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	3 cut(s)	174, 320, 392
Tru9I	TTAA	3 cut(s)	174, 320, 392
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	3 cut(s)	515, 584, 650
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	7 cut(s)	17, 87, 261, 309, 383, 453, 477
VpaK11BI	GGWCC	1 cut(s)	578
XbaI	TCTAGA	1 cut(s)	529
XceI	RCATGY	1 cut(s)	339
XspI	CTAG	3 cut(s)	105, 167, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.