Rh1CG030400
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003714
Physical Location & Seq
Forward (+)
6040605 .. 6044545
3941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG030400.1

Sequence Viewer

Length: 684 bp
ATGAAGAAAAAAATGGGTAGGGGGAAGATTGAGATCAAGAAGATTGAGAACACCAACAGTAGACAAGTCACATTCTCAAAGAGGCGTGCTGGATTACTCAAGAAAGCTCAGGAATTGGCTATTCTCTGCGATGCTGAGGTTGCTGTCATCGTCTTCTCTAACACTGGCAAGCTTTTTGAGTTTTCCAGTGCTGGTATGAAGCGAACTATTGCAAGATACAGCAAGTGTTATGAGTCTTCAGAGACCGCTCTGGTAGAATCAAGGGCAGAGGAGGATGACCCTAAGGACTTGGATGTTCTAAAAGATGAACTTGAGAAGCTACAACAGAATCAATTGCGTCTGTTGGGCAATGACTTGTCTAGTTTGAGCTTGACAGAATTGCAGAAACTAGAAAATCAATTAACTGAAGGATTATTTTCAGTGAAGGACAAAAAGGACAAATTACTGATGGAGCAACTAGAGCAATCAAGAGTAAAGGAACAGCGTGCTATACACGAGAATGAAACCTTGCGCAAACAGGCATACAGCATTCTTCTTGCTAATGCAGATTTCAGTATTGAATATAACTTTCCTTGGAGTAAATATATACTTTTTGTAATGCTGCCAAGCGATACATATCGCAAGAGGAAGGCTCCAGAAAGAGAAAGCCACTCTAATGACTCAGGGAGCCAACTAGGCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0004601 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009636 GO:0009685 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009900 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010033 GO:0010047 GO:0010154 GO:0010227 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016209 GO:0016491 GO:0016684 GO:0019219 GO:0019222 GO:0019752 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042445 GO:0042447 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046395 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0055114 GO:0060255 GO:0060860 GO:0060862 GO:0060867 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080050 GO:0080090 GO:0090567 GO:0097159 GO:0097237 GO:0098754 GO:0098869 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990748 GO:2000026 GO:2000028 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000692 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

227

Amino Acids

26.06

Weight (kDa)

8.87

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 14 - 61 1.4e-26 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 91 - 173 1.5e-18 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 512
AccBSI CCGCTC 1 cut(s) 248
AccI GTMKAC 1 cut(s) 61
AciI CCGC 1 cut(s) 246
AcuI CTGAAG 2 cut(s) 222, 426
AgsI TTSAA 1 cut(s) 560
AluBI AGCT 4 cut(s) 107, 172, 319, 369
AluI AGCT 4 cut(s) 107, 172, 319, 369
Alw26I GTCTC 1 cut(s) 236
AoxI GGCC 1 cut(s) 676
ApeKI GCWGC 1 cut(s) 601
AspLEI GCGC 1 cut(s) 513
AxyI CCTNAGG 1 cut(s) 282
BauI CACGAG 1 cut(s) 494
BbsI GAAGAC 2 cut(s) 145, 228
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 588
BccI CCATC 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 4 cut(s) 360, 389, 458, 674
BglI GCCNNNNNGGC 1 cut(s) 675
BisI GCNGC 1 cut(s) 602
BlsI GCNGC 1 cut(s) 603
BmiI GGNNCC 2 cut(s) 633, 668
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 2 cut(s) 145, 228
BplI GAGNNNNNCTC 2 cut(s) 616, 648
BpmI CTGGAG 1 cut(s) 618
Bpu10I CCTNAGC 2 cut(s) 108, 135
BpuEI CTTGAG 2 cut(s) 83, 332
BsaBI GATNNNNATC 2 cut(s) 32, 615
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 572
Bse1I ACTGG 2 cut(s) 169, 186
Bse21I CCTNAGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 355
Bse8I GATNNNNATC 2 cut(s) 32, 615
BseDI CCNNGG 1 cut(s) 572
BseGI GGATG 2 cut(s) 280, 298
BseJI GATNNNNATC 2 cut(s) 32, 615
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 3 cut(s) 122, 126, 675
BseNI ACTGG 2 cut(s) 169, 186
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 588
BshFI GGCC 1 cut(s) 678
BsmAI GTCTC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 528
BsnI GGCC 1 cut(s) 678
Bso31I GGTCTC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 1 cut(s) 246
BspANI GGCC 1 cut(s) 678
BspCNI CTCAG 3 cut(s) 121, 127, 674
BspLI GGNNCC 2 cut(s) 633, 668
BspTNI GGTCTC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 355
BsrI ACTGG 2 cut(s) 169, 186
BssECI CCNNGG 1 cut(s) 572
BssMI GATC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 494
BssT1I CCWWGG 1 cut(s) 572
Bst2BI CACGAG 1 cut(s) 494
Bst4CI ACNGT 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 87, 170, 486
BstDEI CTNAG 4 cut(s) 108, 135, 282, 661
BstF5I GGATG 2 cut(s) 280, 298
BstHHI GCGC 1 cut(s) 513
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 3 cut(s) 140, 460, 675
BstV1I GCAGC 1 cut(s) 588
BstV2I GAAGAC 2 cut(s) 145, 228
Bsu36I CCTNAGG 1 cut(s) 282
BsuRI GGCC 1 cut(s) 678
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 280, 298
BtsIMutI CAGTG 3 cut(s) 162, 193, 426
Cac8I GCNNGC 3 cut(s) 87, 170, 486
CfoI GCGC 1 cut(s) 513
CseI GACGC 1 cut(s) 326
CviJI RGCY 9 cut(s) 107, 119, 172, 319, 369, 632, 648, 669, 678
CviKI_1 RGCY 9 cut(s) 107, 119, 172, 319, 369, 632, 648, 669, 678
DdeI CTNAG 4 cut(s) 108, 135, 282, 661
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 572
Eco147I AGGCCT 1 cut(s) 678
Eco31I GGTCTC 1 cut(s) 236
Eco57I CTGAAG 2 cut(s) 222, 426
Eco81I CCTNAGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 572
ErhI CCWWGG 1 cut(s) 572
FaiI YATR 8 cut(s) 197, 231, 491, 523, 564, 585, 587, 616
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 602
FokI GGATG 2 cut(s) 287, 305
Fsp4HI GCNGC 1 cut(s) 602
FspBI CTAG 4 cut(s) 360, 389, 458, 674
FspI TGCGCA 1 cut(s) 512
GlaI GCGC 1 cut(s) 512
GluI GCNGC 1 cut(s) 602
GsuI CTGGAG 1 cut(s) 618
HaeIII GGCC 1 cut(s) 678
HgaI GACGC 1 cut(s) 326
HhaI GCGC 1 cut(s) 513
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 4 cut(s) 233, 257, 328, 659
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 5 cut(s) 37, 100, 110, 468, 635
Hpy8I GTNNAC 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 401, 418, 622
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 212, 382, 545
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 460, 675
HpyF3I CTNAG 4 cut(s) 108, 135, 282, 661
HspAI GCGC 1 cut(s) 511
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 3 cut(s) 451, 637, 666
LpnPI CCDG 9 cut(s) 75, 95, 150, 177, 199, 236, 503, 648, 648
Lsp1109I GCAGC 1 cut(s) 588
LweI GCATC 1 cut(s) 121
MaeI CTAG 4 cut(s) 360, 389, 458, 674
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 35
MbiI CCGCTC 1 cut(s) 248
MboI GATC 1 cut(s) 33
MboII GAAGA 6 cut(s) 16, 37, 52, 145, 228, 524
MfeI CAATTG 1 cut(s) 332
MluCI AATT 5 cut(s) 113, 332, 377, 398, 440
MlyI GAGTC 2 cut(s) 242, 653
MnlI CCTC 5 cut(s) 75, 130, 262, 265, 618
MseI TTAA 1 cut(s) 401
MslI CAYNNNNRTG 2 cut(s) 498, 654
MunI CAATTG 1 cut(s) 332
Mva1269I GAATGC 1 cut(s) 528
MwoI GCNNNNNNNGC 3 cut(s) 140, 460, 675
NdeII GATC 1 cut(s) 33
NlaIV GGNNCC 2 cut(s) 633, 668
NmuCI GTSAC 1 cut(s) 67
NsbI TGCGCA 1 cut(s) 512
PceI AGGCCT 1 cut(s) 678
PctI GAATGC 1 cut(s) 528
PfeI GAWTC 2 cut(s) 257, 328
PkrI GCNGC 1 cut(s) 603
PleI GAGTC 2 cut(s) 241, 653
PpsI GAGTC 2 cut(s) 241, 653
PspN4I GGNNCC 2 cut(s) 633, 668
RseI CAYNNNNRTG 2 cut(s) 498, 654
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 1 cut(s) 602
Sau3AI GATC 1 cut(s) 33
SchI GAGTC 2 cut(s) 242, 653
SetI ASST 6 cut(s) 109, 141, 174, 321, 371, 509
SfaNI GCATC 1 cut(s) 121
SmiMI CAYNNNNRTG 2 cut(s) 498, 654
SmlI CTYRAG 2 cut(s) 98, 311
SmoI CTYRAG 2 cut(s) 98, 311
Sse9I AATT 5 cut(s) 113, 332, 377, 398, 440
SseBI AGGCCT 1 cut(s) 678
SsiI CCGC 1 cut(s) 246
SspMI CTAG 4 cut(s) 360, 389, 458, 674
StuI AGGCCT 1 cut(s) 678
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 1 cut(s) 59
TasI AATT 5 cut(s) 113, 332, 377, 398, 440
TfiI GAWTC 2 cut(s) 257, 328
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TscAI CASTG 3 cut(s) 169, 193, 426
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 601
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 4 cut(s) 17, 212, 321, 516
TspRI CASTG 3 cut(s) 169, 193, 426
XmiI GTMKAC 1 cut(s) 61
XspI CTAG 4 cut(s) 360, 389, 458, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.