RLG00000030549
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003714
Physical Location & Seq
Reverse (-)
63374002 .. 63377912
3911 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030549

Sequence Viewer

Length: 765 bp
ATGGGTAGGGGGAAGATTGAGATCAAGAAGATTGAGAACACCAATAGCAGACAAGTCACATTCTCAAAGAGGCGTGCTGGGTTACTCAAGAAAGCTCAGGAATTGGCTATTCTCTGCGATGCTGAGGTTGCTGTCATCGTCTTCTCTAACACTGGCAAGCTTTTTGAGTTTTCCAGTGCTGGTATGAAGCAAACTATTGCAAGATACAACAAGTGTTATGAGTCTTCAGAGACTGCTCTGGTAGAATCAAGGGCAGAGGAGGCTGACCCTACGGACGTGGATGTTCTAAAAGATGAACTTGAGAAGCTACAACAGAATCAATTGCGTCTGTTGGGCAATGACTTGTCAAGTTTGAGCTTGAAAGAATTGCAGAAACTAGAAAATCAATTAACTGAAGGATTATTTTCAGTGAAGGAGAAAAAGGACAAATTACTGATGGAGCAACTAGAGCAATCAAGGGTAAAGGAACAGCGTGCTATACACGAGAATGAAACCTTGCGCAAACAGGTTGAGGAGCTTCGGCGTTTATTTCCCCAAGCTGATCATGCAGTTCCATCTTATCTCGACTATTGCCCTGTAGAAAAACAGAACTCCCCTGTGTACCATGGTGCCAAAAGCCCCGATTTGGTCCGCAATTTCGCATTTGACAATGGAGATTCTGACACTACATTGCAATTAGGGCTGCCAAGCGATACATATCGCAAGAGGAAGGCTCCAGAAAGAGAAAGCCACTCTAATGACTCAGGGAGTCAACTAGGCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0004601 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009636 GO:0009685 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009900 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010033 GO:0010047 GO:0010154 GO:0010227 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016209 GO:0016491 GO:0016684 GO:0019219 GO:0019222 GO:0019752 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042445 GO:0042447 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046395 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0055114 GO:0060255 GO:0060860 GO:0060862 GO:0060867 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080050 GO:0080090 GO:0090567 GO:0097159 GO:0097237 GO:0098754 GO:0098869 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990748 GO:2000026 GO:2000028 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000692 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

255

Amino Acids

28.8

Weight (kDa)

6.18

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 1.7e-26 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 91 - 171 2.6e-19 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 500
AccB1I GGYRCC 1 cut(s) 608
AciI CCGC 1 cut(s) 631
AcuI CTGAAG 2 cut(s) 210, 414
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 1 cut(s) 625
AgsI TTSAA 1 cut(s) 361
AjiI CACGTC 1 cut(s) 277
AluBI AGCT 6 cut(s) 95, 160, 307, 357, 517, 539
AluI AGCT 6 cut(s) 95, 160, 307, 357, 517, 539
Alw26I GTCTC 1 cut(s) 224
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 1 cut(s) 757
ApeKI GCWGC 1 cut(s) 682
AspLEI GCGC 1 cut(s) 501
AspS9I GGNCC 1 cut(s) 628
AvaII GGWCC 1 cut(s) 628
BanI GGYRCC 1 cut(s) 608
BauI CACGAG 1 cut(s) 482
BbsI GAAGAC 2 cut(s) 133, 216
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 669
BccI CCATC 2 cut(s) 430, 562
BclI TGATCA 1 cut(s) 541
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 3 cut(s) 377, 446, 755
BfmI CTRYAG 1 cut(s) 576
BisI GCNGC 1 cut(s) 683
BlsI GCNGC 1 cut(s) 684
Bme18I GGWCC 1 cut(s) 628
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 2 cut(s) 610, 714
BmsI GCATC 1 cut(s) 109
BpiI GAAGAC 2 cut(s) 133, 216
BplI GAGNNNNNCTC 2 cut(s) 697, 729
BpmI CTGGAG 1 cut(s) 699
Bpu10I CCTNAGC 2 cut(s) 96, 123
BpuEI CTTGAG 2 cut(s) 71, 320
BsaBI GATNNNNATC 2 cut(s) 20, 696
BsaJI CCNNGG 1 cut(s) 604
Bsc4I CCNNNNNNNGG 1 cut(s) 625
Bse1I ACTGG 2 cut(s) 157, 174
Bse3DI GCAATG 2 cut(s) 343, 668
Bse8I GATNNNNATC 2 cut(s) 20, 696
BseDI CCNNGG 1 cut(s) 604
BseGI GGATG 1 cut(s) 286
BseJI GATNNNNATC 2 cut(s) 20, 696
BseLI CCNNNNNNNGG 1 cut(s) 625
BseMI GCAATG 2 cut(s) 343, 668
BseMII CTCAG 3 cut(s) 110, 114, 756
BseNI ACTGG 2 cut(s) 157, 174
BseRI GAGGAG 2 cut(s) 272, 527
BseXI GCAGC 1 cut(s) 669
BseYI CCCAGC 1 cut(s) 77
BshFI GGCC 1 cut(s) 759
BshNI GGYRCC 1 cut(s) 608
BslI CCNNNNNNNGG 1 cut(s) 625
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 759
Bsp143I GATC 2 cut(s) 21, 541
Bsp19I CCATGG 1 cut(s) 604
BspACI CCGC 1 cut(s) 631
BspANI GGCC 1 cut(s) 759
BspCNI CTCAG 3 cut(s) 109, 115, 755
BspLI GGNNCC 2 cut(s) 610, 714
BspT107I GGYRCC 1 cut(s) 608
BsrDI GCAATG 2 cut(s) 343, 668
BsrI ACTGG 2 cut(s) 157, 174
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 2 cut(s) 21, 541
BssSI CACGAG 1 cut(s) 482
BssT1I CCWWGG 1 cut(s) 604
Bst2BI CACGAG 1 cut(s) 482
BstC8I GCNNGC 3 cut(s) 75, 158, 474
BstDEI CTNAG 3 cut(s) 96, 123, 742
BstDSI CCRYGG 1 cut(s) 604
BstF5I GGATG 1 cut(s) 286
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 2 cut(s) 24, 544
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 21, 541
BstMWI GCNNNNNNNGC 5 cut(s) 128, 260, 448, 545, 679
BstSFI CTRYAG 1 cut(s) 576
BstV1I GCAGC 1 cut(s) 669
BstV2I GAAGAC 2 cut(s) 133, 216
BsuRI GGCC 1 cut(s) 759
BtgI CCRYGG 1 cut(s) 604
BtgZI GCGATG 1 cut(s) 132
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 3 cut(s) 150, 181, 414
Cac8I GCNNGC 3 cut(s) 75, 158, 474
CaiI CAGNNNCTG 1 cut(s) 233
CfoI GCGC 1 cut(s) 501
Cfr13I GGNCC 1 cut(s) 628
CseI GACGC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 601
CviAII CATG 2 cut(s) 545, 605
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 3 cut(s) 96, 123, 742
DpnI GATC 2 cut(s) 23, 543
DpnII GATC 2 cut(s) 21, 541
Eco130I CCWWGG 1 cut(s) 604
Eco147I AGGCCT 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 628
Eco57I CTGAAG 2 cut(s) 210, 414
EcoT14I CCWWGG 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 604
FaeI CATG 2 cut(s) 548, 608
FaiI YATR 6 cut(s) 185, 219, 479, 546, 606, 697
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FatI CATG 2 cut(s) 544, 604
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 1 cut(s) 683
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 683
FspBI CTAG 3 cut(s) 377, 446, 755
FspI TGCGCA 1 cut(s) 500
GlaI GCGC 1 cut(s) 500
GluI GCNGC 1 cut(s) 683
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 699
HaeIII GGCC 1 cut(s) 759
HgaI GACGC 1 cut(s) 314
HhaI GCGC 1 cut(s) 501
Hin1II CATG 2 cut(s) 548, 608
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HincII GTYRAC 1 cut(s) 752
HindII GTYRAC 1 cut(s) 752
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 6 cut(s) 221, 245, 316, 656, 740, 748
Hpy166II GTNNAC 2 cut(s) 601, 752
Hpy188I TCNGA 2 cut(s) 229, 661
Hpy188III TCNNGA 5 cut(s) 25, 88, 98, 563, 716
Hpy8I GTNNAC 2 cut(s) 601, 752
HpyAV CCTTC 3 cut(s) 389, 406, 703
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 4 cut(s) 200, 370, 548, 673
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 260, 448, 545, 679
HpyF3I CTNAG 3 cut(s) 96, 123, 742
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 2 cut(s) 548, 608
HspAI GCGC 1 cut(s) 499
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 2 cut(s) 21, 541
LmnI GCTCC 3 cut(s) 439, 514, 718
Lsp1109I GCAGC 1 cut(s) 669
LweI GCATC 1 cut(s) 109
MaeI CTAG 3 cut(s) 377, 446, 755
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 55, 81
MalI GATC 2 cut(s) 23, 543
MboI GATC 2 cut(s) 21, 541
MboII GAAGA 4 cut(s) 25, 40, 133, 216
MfeI CAATTG 1 cut(s) 320
MluCI AATT 7 cut(s) 101, 320, 365, 386, 428, 634, 674
MlyI GAGTC 3 cut(s) 230, 734, 757
MnlI CCTC 6 cut(s) 63, 118, 250, 253, 505, 699
MseI TTAA 1 cut(s) 389
MslI CAYNNNNRTG 2 cut(s) 486, 735
MunI CAATTG 1 cut(s) 320
MwoI GCNNNNNNNGC 5 cut(s) 128, 260, 448, 545, 679
NcoI CCATGG 1 cut(s) 604
NdeII GATC 2 cut(s) 21, 541
NlaIII CATG 2 cut(s) 548, 608
NlaIV GGNNCC 2 cut(s) 610, 714
NmuCI GTSAC 1 cut(s) 55
NsbI TGCGCA 1 cut(s) 500
PceI AGGCCT 1 cut(s) 759
PfeI GAWTC 3 cut(s) 245, 316, 656
PkrI GCNGC 1 cut(s) 684
PleI GAGTC 3 cut(s) 229, 734, 756
PpsI GAGTC 3 cut(s) 229, 734, 756
PspFI CCCAGC 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 610, 714
PspPI GGNCC 1 cut(s) 628
PstNI CAGNNNCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
RseI CAYNNNNRTG 2 cut(s) 486, 735
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 1 cut(s) 683
Sau3AI GATC 2 cut(s) 21, 541
Sau96I GGNCC 1 cut(s) 628
SchI GAGTC 3 cut(s) 230, 734, 757
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 576
SinI GGWCC 1 cut(s) 628
SmiMI CAYNNNNRTG 2 cut(s) 486, 735
SmlI CTYRAG 2 cut(s) 86, 299
SmoI CTYRAG 2 cut(s) 86, 299
Sse9I AATT 7 cut(s) 101, 320, 365, 386, 428, 634, 674
SseBI AGGCCT 1 cut(s) 759
SsiI CCGC 1 cut(s) 631
SspMI CTAG 3 cut(s) 377, 446, 755
StuI AGGCCT 1 cut(s) 759
StyI CCWWGG 1 cut(s) 604
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 564
TasI AATT 7 cut(s) 101, 320, 365, 386, 428, 634, 674
TfiI GAWTC 3 cut(s) 245, 316, 656
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TscAI CASTG 3 cut(s) 157, 181, 414
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 682
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 200, 309, 504
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 3 cut(s) 157, 181, 414
VpaK11BI GGWCC 1 cut(s) 628
XspI CTAG 3 cut(s) 377, 446, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.