Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000308.1

Orthogroup ID

OG0003714

Physical Location & Seq

Genomic Coordinates Forward (+)

28126 .. 32049

Gene Structure 3924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000308.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgggtagggggaagattgagatcaagaagattgagaacaccaacagtagacaagtcacattctcgaagaggcgtgctggattactcaagaaagctcaggaattggctattctctgcgatgctgaggttgctgtcatcgtcttctctaacactggcaagctttttgagttttccagtgctggtatgaagcgaactattgcaagatacagcaagtgttatgagtcttcagagaccgctctggtagaatcaagggcagaggaggatgccgtggatgttctaaaagatgaacttgagaagctacaacagaatcaattgcgtctgttgggcaatgacttgtctagtttgagcttgaaagaattgcagaaactagaaaatcaattaactgaaggattattttcagtgaaggagaaaaaggaaaaattactgatggagcaactagagcaatcaagagtaaaggaacagcgtgctatacacgagaatgaaaccttgcgcaaacaggttgaggagcttcggcgtttatttccccaagctgatcatgcagttccatcttatcttgactattgtcctgtagaaaaacagaactcccctgtgcaccatggtgccaaaagccccgatttggtcagcaatttcgcattggacaatggagattctgacactacattgcaattagggctgccaagcgatacatatcgcaagaggaaggctccagaaagagaaagccactctaatgactcagggagccaactaggcctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0004601 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009636 GO:0009685 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009900 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010033 GO:0010047 GO:0010154 GO:0010227 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016209 GO:0016491 GO:0016684 GO:0019219 GO:0019222 GO:0019752 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042445 GO:0042447 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046395 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0055114 GO:0060255 GO:0060860 GO:0060862 GO:0060867 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080050 GO:0080090 GO:0090567 GO:0097159 GO:0097237 GO:0098754 GO:0098869 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990748 GO:2000026 GO:2000028 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000692 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

251

Amino Acids

28.38

Weight (kDa)

6.56

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13790 AT5G13790
fragaria_vesca	FvH4_7g01720 FvH4_7g01720 FvH4_7g01720 FvH4_7g01720
malus_domestica	MD00G1004500.v1.1 MD01G1193800.v1.1 MD02G1301400.v1.1 MD07G1022500.v1.1
prunus_persica	Prupe.2G023100_v2.0.a1 Prupe.2G023100_v2.0.a1
pyrus_communis	pycom02g25320 pycom07g01690
rosa_chinensis	RchiOBHm_Chr0c22g0500511 RchiOBHm_Chr1g0318281 RchiOBHm_Chr7g0204181 RchiOBHm_Chr7g0206821 RchiOBHm_Chr7g0207131
rosa_laevigata	RLG00000030549
rosa_multiflora	Rmu_ssc0000308.1_g000004
rosa_roxburghii	Rroxscaffold_4G00329440 Rroxscaffold_4G00329720
rosa_rugosa	Rorug01G0019900 Rorug01G0019900
rosa_samantha	Rh1AG032000 Rh1BG027500 Rh1CG030400 Rh1CG044100 Rh1DG039500 Rh3AG323900 Rh3BG361900 Rh4CG066600
rosa_wichuraiana	Rw1G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	491
AccB1I	GGYRCC	1 cut(s)	599
AccBSI	CCGCTC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	49
AciI	CCGC	1 cut(s)	234
AcuI	CTGAAG	2 cut(s)	210, 405
AfiI	CCNNNNNNNGG	1 cut(s)	616
AgsI	TTSAA	1 cut(s)	352
AleI	CACNNNNGTG	1 cut(s)	597
AluBI	AGCT	6 cut(s)	95, 160, 298, 348, 508, 530
AluI	AGCT	6 cut(s)	95, 160, 298, 348, 508, 530
Alw21I	GWGCWC	1 cut(s)	594
Alw26I	GTCTC	1 cut(s)	224
Alw44I	GTGCAC	1 cut(s)	590
AoxI	GGCC	1 cut(s)	748
ApaLI	GTGCAC	1 cut(s)	590
ApeKI	GCWGC	1 cut(s)	673
AspLEI	GCGC	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	594
BanI	GGYRCC	1 cut(s)	599
BauI	CACGAG	1 cut(s)	473
BbsI	GAAGAC	2 cut(s)	133, 216
Bbv12I	GWGCWC	1 cut(s)	594
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	660
BccI	CCATC	2 cut(s)	421, 553
BceAI	ACGGC	1 cut(s)	251
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	4 cut(s)	339, 368, 437, 746
BfmI	CTRYAG	1 cut(s)	567
BglI	GCCNNNNNGGC	1 cut(s)	747
BisI	GCNGC	1 cut(s)	674
BlsI	GCNGC	1 cut(s)	675
BmiI	GGNNCC	3 cut(s)	601, 705, 740
BmsI	GCATC	2 cut(s)	109, 253
BoxI	GACNNNNGTC	1 cut(s)	561
BpiI	GAAGAC	2 cut(s)	133, 216
BplI	GAGNNNNNCTC	2 cut(s)	688, 720
BpmI	CTGGAG	1 cut(s)	690
Bpu10I	CCTNAGC	2 cut(s)	96, 123
BpuEI	CTTGAG	2 cut(s)	71, 311
BsaBI	GATNNNNATC	2 cut(s)	20, 687
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	267, 595
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse1I	ACTGG	2 cut(s)	157, 174
Bse3DI	GCAATG	2 cut(s)	334, 659
Bse8I	GATNNNNATC	2 cut(s)	20, 687
BseDI	CCNNGG	2 cut(s)	267, 595
BseGI	GGATG	2 cut(s)	268, 277
BseJI	GATNNNNATC	2 cut(s)	20, 687
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMI	GCAATG	2 cut(s)	334, 659
BseMII	CTCAG	3 cut(s)	110, 114, 747
BseNI	ACTGG	2 cut(s)	157, 174
BseRI	GAGGAG	2 cut(s)	272, 518
BseSI	GKGCMC	1 cut(s)	594
BseXI	GCAGC	1 cut(s)	660
BshFI	GGCC	1 cut(s)	750
BshNI	GGYRCC	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	594
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmAI	GTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	750
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp143I	GATC	2 cut(s)	21, 532
Bsp19I	CCATGG	1 cut(s)	595
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	1 cut(s)	750
BspCNI	CTCAG	3 cut(s)	109, 115, 746
BspLI	GGNNCC	3 cut(s)	601, 705, 740
BspT107I	GGYRCC	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	236
BsrDI	GCAATG	2 cut(s)	334, 659
BsrI	ACTGG	2 cut(s)	157, 174
BssECI	CCNNGG	2 cut(s)	267, 595
BssMI	GATC	2 cut(s)	21, 532
BssSI	CACGAG	1 cut(s)	473
BssT1I	CCWWGG	1 cut(s)	595
Bst2BI	CACGAG	1 cut(s)	473
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	75, 158, 465
BstDEI	CTNAG	3 cut(s)	96, 123, 733
BstDSI	CCRYGG	2 cut(s)	267, 595
BstF5I	GGATG	2 cut(s)	268, 277
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	2 cut(s)	24, 535
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	2 cut(s)	21, 532
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 439, 536, 670, 747
BstPAI	GACNNNNGTC	1 cut(s)	561
BstSFI	CTRYAG	1 cut(s)	567
BstSLI	GKGCMC	1 cut(s)	594
BstV1I	GCAGC	1 cut(s)	660
BstV2I	GAAGAC	2 cut(s)	133, 216
BsuRI	GGCC	1 cut(s)	750
BtgI	CCRYGG	2 cut(s)	267, 595
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	268, 277
BtsIMutI	CAGTG	3 cut(s)	150, 181, 405
Cac8I	GCNNGC	3 cut(s)	75, 158, 465
CfoI	GCGC	1 cut(s)	492
CseI	GACGC	1 cut(s)	305
CviAII	CATG	2 cut(s)	536, 596
DdeI	CTNAG	3 cut(s)	96, 123, 733
DpnI	GATC	2 cut(s)	23, 534
DpnII	GATC	2 cut(s)	21, 532
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	595
Eco147I	AGGCCT	1 cut(s)	750
Eco31I	GGTCTC	1 cut(s)	224
Eco57I	CTGAAG	2 cut(s)	210, 405
EcoT14I	CCWWGG	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	2 cut(s)	539, 599
FaiI	YATR	6 cut(s)	185, 219, 470, 537, 597, 688
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FatI	CATG	2 cut(s)	535, 595
FbaI	TGATCA	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	674
FokI	GGATG	2 cut(s)	275, 284
Fsp4HI	GCNGC	1 cut(s)	674
FspBI	CTAG	4 cut(s)	339, 368, 437, 746
FspI	TGCGCA	1 cut(s)	491
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	1 cut(s)	674
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	1 cut(s)	750
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	2 cut(s)	539, 599
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	5 cut(s)	221, 245, 307, 647, 731
Hpy166II	GTNNAC	2 cut(s)	50, 592
Hpy188I	TCNGA	2 cut(s)	229, 652
Hpy188III	TCNNGA	7 cut(s)	25, 64, 88, 98, 447, 554, 707
Hpy8I	GTNNAC	2 cut(s)	50, 592
HpyAV	CCTTC	3 cut(s)	380, 397, 694
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	5 cut(s)	200, 361, 539, 592, 664
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 439, 536, 670, 747
HpyF3I	CTNAG	3 cut(s)	96, 123, 733
Hsp92II	CATG	2 cut(s)	539, 599
HspAI	GCGC	1 cut(s)	490
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	21, 532
LmnI	GCTCC	4 cut(s)	430, 505, 709, 738
Lsp1109I	GCAGC	1 cut(s)	660
LweI	GCATC	2 cut(s)	109, 253
MaeI	CTAG	4 cut(s)	339, 368, 437, 746
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	23, 534
MbiI	CCGCTC	1 cut(s)	236
MboI	GATC	2 cut(s)	21, 532
MboII	GAAGA	5 cut(s)	25, 40, 79, 133, 216
MfeI	CAATTG	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	594
MluCI	AATT	7 cut(s)	101, 311, 356, 377, 419, 625, 665
MlyI	GAGTC	2 cut(s)	230, 725
MnlI	CCTC	6 cut(s)	63, 118, 250, 253, 496, 690
MseI	TTAA	1 cut(s)	380
MslI	CAYNNNNRTG	3 cut(s)	477, 597, 726
MunI	CAATTG	1 cut(s)	311
MwoI	GCNNNNNNNGC	5 cut(s)	128, 439, 536, 670, 747
NcoI	CCATGG	1 cut(s)	595
NdeII	GATC	2 cut(s)	21, 532
NlaIII	CATG	2 cut(s)	539, 599
NlaIV	GGNNCC	3 cut(s)	601, 705, 740
NmuCI	GTSAC	1 cut(s)	55
NsbI	TGCGCA	1 cut(s)	491
OliI	CACNNNNGTG	1 cut(s)	597
PceI	AGGCCT	1 cut(s)	750
PfeI	GAWTC	3 cut(s)	245, 307, 647
PkrI	GCNGC	1 cut(s)	675
PleI	GAGTC	2 cut(s)	229, 725
PpsI	GAGTC	2 cut(s)	229, 725
PshAI	GACNNNNGTC	1 cut(s)	561
PspN4I	GGNNCC	3 cut(s)	601, 705, 740
RseI	CAYNNNNRTG	3 cut(s)	477, 597, 726
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	1 cut(s)	674
Sau3AI	GATC	2 cut(s)	21, 532
SchI	GAGTC	2 cut(s)	230, 725
SduI	GDGCHC	1 cut(s)	594
SetI	ASST	9 cut(s)	97, 129, 162, 300, 350, 488, 501, 510, 532
SfaNI	GCATC	2 cut(s)	109, 253
SfcI	CTRYAG	1 cut(s)	567
SmiMI	CAYNNNNRTG	3 cut(s)	477, 597, 726
SmlI	CTYRAG	2 cut(s)	86, 290
SmoI	CTYRAG	2 cut(s)	86, 290
Sse9I	AATT	7 cut(s)	101, 311, 356, 377, 419, 625, 665
SseBI	AGGCCT	1 cut(s)	750
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	4 cut(s)	339, 368, 437, 746
StuI	AGGCCT	1 cut(s)	750
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	65
TasI	AATT	7 cut(s)	101, 311, 356, 377, 419, 625, 665
TfiI	GAWTC	3 cut(s)	245, 307, 647
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	3 cut(s)	157, 181, 405
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	673
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	200, 300, 495
TspRI	CASTG	3 cut(s)	157, 181, 405
VneI	GTGCAC	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	49
XspI	CTAG	4 cut(s)	339, 368, 437, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.