Rh1CG044100
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003714
Physical Location & Seq
Forward (+)
8324535 .. 8347549
23015 bp
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UTR
Exon/CDS
Intron
Rh1CG044100.1

Sequence Viewer

Length: 498 bp
ATGGGTAGGGGGAAGATTGAGAACACCAACAGTAGACAAGTCACATTCTCAAAGAGGCGTGCTGGATTACTCAAGAAAGCTCAGGAATTGGCTATTCTCTGCGATGCTGAGGTTGTTGTCATCGTCTTCTCTAACACTGGCAAGCTTTTTGAGTTTTCCAGTGCTGGATACAGCAAGTGTTATGAGTCTTCAGAGACCGCTCTGGTAGAATCAAGGGCAGAGGAGGATGACCCTAAGGACGTGGATGTTCTAAAAGATGAACTTGAGAAGCTACAACAGAATCAATTGTACGTATTAAAAAAGGAAACTAGTAAGGAACCTGAACAACTGCACATAAATTCTTCTGCTCTAATGCCCTTTAAGACTTCCAGTGGCCCTGACAGCTCCAGCACCCGGTTTTCATATGCAACAGACCATCTTAAGAATAATAAGAAAGGAAAACCCAAGCCCAAAGGGGACAGAGATTGGTTGGAGTCTAGATCAAGTCTCAATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0004601 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009636 GO:0009685 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009900 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010033 GO:0010047 GO:0010154 GO:0010227 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016209 GO:0016491 GO:0016684 GO:0019219 GO:0019222 GO:0019752 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042445 GO:0042447 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046395 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0055114 GO:0060255 GO:0060860 GO:0060862 GO:0060867 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080050 GO:0080090 GO:0090567 GO:0097159 GO:0097237 GO:0098754 GO:0098869 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990748 GO:2000026 GO:2000028 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000692 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

165

Amino Acids

18.51

Weight (kDa)

8.44

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 5 - 52 3e-26 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 200
AccI GTMKAC 1 cut(s) 34
AciI CCGC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 393
AflII CTTAAG 1 cut(s) 419
AhlI ACTAGT 1 cut(s) 308
AjiI CACGTC 1 cut(s) 241
AluBI AGCT 4 cut(s) 80, 145, 271, 384
AluI AGCT 4 cut(s) 80, 145, 271, 384
Alw26I GTCTC 2 cut(s) 188, 491
AoxI GGCC 1 cut(s) 373
ApoI RAATTY 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 374
AsuC2I CCSGG 1 cut(s) 394
AxyI CCTNAGG 1 cut(s) 234
BbsI GAAGAC 2 cut(s) 118, 180
BbvCI CCTCAGC 1 cut(s) 108
BccI CCATC 1 cut(s) 423
BciVI GTATCC 1 cut(s) 161
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 2 cut(s) 188, 491
BcuI ACTAGT 1 cut(s) 308
BfaI CTAG 2 cut(s) 309, 477
BfrI CTTAAG 1 cut(s) 419
BfuI GTATCC 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 394
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 394
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 2 cut(s) 118, 180
BpmI CTGGAG 1 cut(s) 370
Bpu10I CCTNAGC 2 cut(s) 81, 108
BpuEI CTTGAG 2 cut(s) 56, 284
BpuMI CCSGG 1 cut(s) 394
BsaAI YACGTR 1 cut(s) 292
BsaI GGTCTC 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse1I ACTGG 3 cut(s) 142, 159, 369
Bse21I CCTNAGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 232, 250
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 95, 99
BseNI ACTGG 3 cut(s) 142, 159, 369
BseRI GAGGAG 1 cut(s) 236
BsgI GTGCAG 1 cut(s) 314
BshFI GGCC 1 cut(s) 375
BsiSI CCGG 1 cut(s) 394
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 1 cut(s) 393
BsmAI GTCTC 2 cut(s) 188, 491
BsmFI GGGAC 1 cut(s) 470
BsnI GGCC 1 cut(s) 375
Bso31I GGTCTC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 479
BspACI CCGC 1 cut(s) 198
BspANI GGCC 1 cut(s) 375
BspCNI CTCAG 2 cut(s) 94, 100
BspLI GGNNCC 1 cut(s) 318
BspTI CTTAAG 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 200
BsrI ACTGG 3 cut(s) 142, 159, 369
BssMI GATC 1 cut(s) 479
Bst4CI ACNGT 1 cut(s) 32
BstAFI CTTAAG 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 2 cut(s) 60, 143
BstDEI CTNAG 3 cut(s) 81, 108, 234
BstF5I GGATG 2 cut(s) 232, 250
BstKTI GATC 1 cut(s) 482
BstMAI GTCTC 2 cut(s) 188, 491
BstMBI GATC 1 cut(s) 479
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 392
BstSNI TACGTA 1 cut(s) 292
BstV2I GAAGAC 2 cut(s) 118, 180
Bsu36I CCTNAGG 1 cut(s) 234
BsuI GTATCC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 375
BtgZI GCGATG 1 cut(s) 117
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 2 cut(s) 232, 250
BtsIMutI CAGTG 3 cut(s) 135, 166, 376
Cac8I GCNNGC 2 cut(s) 60, 143
Cfr13I GGNCC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 289
CviJI RGCY 7 cut(s) 80, 92, 145, 271, 375, 384, 448
CviKI_1 RGCY 7 cut(s) 80, 92, 145, 271, 375, 384, 448
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 3 cut(s) 81, 108, 234
DpnI GATC 1 cut(s) 481
DpnII GATC 1 cut(s) 479
Eco105I TACGTA 1 cut(s) 292
Eco31I GGTCTC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 174
Eco81I CCTNAGG 1 cut(s) 234
FaiI YATR 4 cut(s) 183, 335, 403, 405
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 470
FauNDI CATATG 1 cut(s) 403
FblI GTMKAC 1 cut(s) 34
FokI GGATG 2 cut(s) 239, 257
FspBI CTAG 2 cut(s) 309, 477
GsuI CTGGAG 1 cut(s) 370
HaeIII GGCC 1 cut(s) 375
HapII CCGG 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 4 cut(s) 185, 209, 280, 473
HpaII CCGG 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 3 cut(s) 73, 83, 477
Hpy8I GTNNAC 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 2 cut(s) 240, 291
HpyCH4V TGCA 2 cut(s) 331, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 3 cut(s) 81, 108, 234
HpySE526I ACGT 2 cut(s) 240, 291
Kzo9I GATC 1 cut(s) 479
LmnI GCTCC 1 cut(s) 389
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 309, 477
MaeII ACGT 2 cut(s) 240, 291
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 481
MbiI CCGCTC 1 cut(s) 200
MboI GATC 1 cut(s) 479
MboII GAAGA 4 cut(s) 25, 118, 180, 333
MfeI CAATTG 1 cut(s) 284
MluCI AATT 3 cut(s) 86, 284, 337
MlyI GAGTC 2 cut(s) 194, 482
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 4 cut(s) 48, 103, 214, 217
MseI TTAA 4 cut(s) 296, 360, 420, 496
MspCI CTTAAG 1 cut(s) 419
MspI CCGG 1 cut(s) 394
MspR9I CCNGG 1 cut(s) 394
MunI CAATTG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 381
NciI CCSGG 1 cut(s) 394
NdeI CATATG 1 cut(s) 403
NdeII GATC 1 cut(s) 479
NlaIV GGNNCC 1 cut(s) 318
NmuCI GTSAC 1 cut(s) 40
PfeI GAWTC 2 cut(s) 209, 280
PleI GAGTC 2 cut(s) 193, 481
PpsI GAGTC 2 cut(s) 193, 481
Ppu21I YACGTR 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 1 cut(s) 374
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 4 cut(s) 296, 360, 420, 496
Sau3AI GATC 1 cut(s) 479
Sau96I GGNCC 1 cut(s) 374
SchI GAGTC 2 cut(s) 194, 482
ScrFI CCNGG 1 cut(s) 394
SetI ASST 8 cut(s) 82, 114, 147, 243, 273, 294, 322, 386
SfaNI GCATC 1 cut(s) 94
SmlI CTYRAG 3 cut(s) 71, 263, 419
SmoI CTYRAG 3 cut(s) 71, 263, 419
SnaBI TACGTA 1 cut(s) 292
SpeI ACTAGT 1 cut(s) 308
Sse9I AATT 3 cut(s) 86, 284, 337
SsiI CCGC 1 cut(s) 198
SspMI CTAG 2 cut(s) 309, 477
StyD4I CCNGG 1 cut(s) 392
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 2 cut(s) 243, 294
TasI AATT 3 cut(s) 86, 284, 337
TfiI GAWTC 2 cut(s) 209, 280
Tru1I TTAA 4 cut(s) 296, 360, 420, 496
Tru9I TTAA 4 cut(s) 296, 360, 420, 496
TscAI CASTG 3 cut(s) 142, 166, 376
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 273, 390
TspRI CASTG 3 cut(s) 142, 166, 376
Vha464I CTTAAG 1 cut(s) 419
XapI RAATTY 1 cut(s) 337
XbaI TCTAGA 1 cut(s) 476
XmiI GTMKAC 1 cut(s) 34
XspI CTAG 2 cut(s) 309, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.