Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0003714

Physical Location & Seq

Genomic Coordinates Reverse (-)

702664 .. 707530

Gene Structure 4867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1004500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTGGCATATTTTTACCAATTTCTATAAGATTATTTTTCTTTACTATTACTTATGGTGGTGGATGATGATTAGGCAAAGCGAGGACATGGTGAGAGGGAAGATTGAGATTAAAAGAATTGAGAATGACACTAGCCGGCAAGTGACCTTCTCGAAACGTCGAAACGGCTTGTTTAAGAAAGCTTTTGAGCTTTCGGTTCTTTGCGATGCTGAAGTTGCAGTCATCACCTTCTCTCAGAAAGGCAGGATCTATGAGTTCTCCAGCTCTGACATGCACCAGACTATAGAACGATACCTCAAACATGAAAATGGAGGGGAAACCAACATGGTTGAAGCGGAACAATACGTGCAGGTTAGAAGTTCTATCTTCGAATTTGAAAATCCATCTTTAATTTCAGAGTTCATTATAAAACTTACAGTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

142

Amino Acids

16.99

Weight (kDa)

6.84

Isoelectric Point (pI)

56.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	39 - 86	2.3e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13790 AT5G13790
fragaria_vesca	FvH4_7g01720 FvH4_7g01720 FvH4_7g01720 FvH4_7g01720
malus_domestica	MD00G1004500.v1.1 MD01G1193800.v1.1 MD02G1301400.v1.1 MD07G1022500.v1.1
prunus_persica	Prupe.2G023100_v2.0.a1 Prupe.2G023100_v2.0.a1
pyrus_communis	pycom02g25320 pycom07g01690
rosa_chinensis	RchiOBHm_Chr0c22g0500511 RchiOBHm_Chr1g0318281 RchiOBHm_Chr7g0204181 RchiOBHm_Chr7g0206821 RchiOBHm_Chr7g0207131
rosa_laevigata	RLG00000030549
rosa_multiflora	Rmu_ssc0000308.1_g000004
rosa_roxburghii	Rroxscaffold_4G00329440 Rroxscaffold_4G00329720
rosa_rugosa	Rorug01G0019900 Rorug01G0019900
rosa_samantha	Rh1AG032000 Rh1BG027500 Rh1CG030400 Rh1CG044100 Rh1DG039500 Rh3AG323900 Rh3BG361900 Rh4CG066600
rosa_wichuraiana	Rw1G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	340
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	332, 377
AluBI	AGCT	3 cut(s)	182, 190, 264
AluI	AGCT	3 cut(s)	182, 190, 264
AlwI	GGATC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	103, 217
AsuII	TTCGAA	1 cut(s)	369
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	340
BmsI	GCATC	1 cut(s)	196
BpmI	CTGGAG	1 cut(s)	244
Bpu14I	TTCGAA	1 cut(s)	369
BsaAI	YACGTR	1 cut(s)	346
Bse118I	RCCGGY	1 cut(s)	135
BseGI	GGATG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	136
Bsp119I	TTCGAA	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	335
BspCNI	CTCAG	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	135
BssMI	GATC	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	418
BstBAI	YACGTR	1 cut(s)	346
BstBI	TTCGAA	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	69
BstKTI	GATC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	69
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	135
CviAII	CATG	4 cut(s)	88, 271, 302, 325
CviJI	RGCY	5 cut(s)	135, 168, 182, 190, 264
CviKI_1	RGCY	5 cut(s)	135, 168, 182, 190, 264
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	231
FaeI	CATG	4 cut(s)	91, 274, 305, 328
FatI	CATG	4 cut(s)	87, 270, 301, 324
FokI	GGATG	1 cut(s)	76
FspBI	CTAG	1 cut(s)	132
GsuI	CTGGAG	1 cut(s)	244
HapII	CCGG	1 cut(s)	136
Hin1II	CATG	4 cut(s)	91, 274, 305, 328
HindIII	AAGCTT	1 cut(s)	180
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	2 cut(s)	103, 217
Hpy188I	TCNGA	3 cut(s)	237, 268, 397
Hpy188III	TCNNGA	2 cut(s)	151, 423
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	157, 238
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	2 cut(s)	157, 345
HpyCH4V	TGCA	3 cut(s)	218, 274, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	2 cut(s)	157, 345
Hsp92II	CATG	4 cut(s)	91, 274, 305, 328
KroI	GCCGGC	1 cut(s)	135
KroNI	GCCGGC	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	246
LpnPI	CCDG	5 cut(s)	149, 229, 274, 290, 335
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	2 cut(s)	157, 345
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	2 cut(s)	112, 358
MflI	RGATCY	1 cut(s)	246
MluCI	AATT	4 cut(s)	19, 117, 371, 390
MnlI	CCTC	4 cut(s)	76, 89, 305, 305
MroNI	GCCGGC	1 cut(s)	135
MseI	TTAA	3 cut(s)	111, 174, 389
MslI	CAYNNNNRTG	1 cut(s)	306
MspI	CCGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	215
NaeI	GCCGGC	1 cut(s)	137
NdeII	GATC	1 cut(s)	246
NgoMIV	GCCGGC	1 cut(s)	135
NlaIII	CATG	4 cut(s)	91, 274, 305, 328
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	369
PdiI	GCCGGC	1 cut(s)	137
Ppu21I	YACGTR	1 cut(s)	346
PsiI	TTATAA	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	3 cut(s)	111, 174, 389
Sau3AI	GATC	1 cut(s)	246
SetI	ASST	9 cut(s)	149, 160, 184, 192, 230, 266, 297, 348, 354
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	4 cut(s)	19, 117, 371, 390
SsiI	CCGC	1 cut(s)	335
SspMI	CTAG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	2 cut(s)	160, 348
TaqI	TCGA	3 cut(s)	152, 160, 369
TasI	AATT	4 cut(s)	19, 117, 371, 390
Tru1I	TTAA	3 cut(s)	111, 174, 389
Tru9I	TTAA	3 cut(s)	111, 174, 389
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	318, 391
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	1 cut(s)	274
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.