RchiOBHm_Chr1g0318281
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003714
Physical Location & Seq
Forward (+)
5760582 .. 5765231
4650 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54857

Sequence Viewer

Length: 777 bp
ATGAAGAAAAAAATGGGTAGGGGGAAGATTGAGATCAAGAAGATTGAGAACACCAACAGTAGACAAGTCACATTCTCAAAGAGGCGTGCTGGATTACTCAAGAAAGCTCAGGAATTGGCTATTCTCTGCGATGCTGAGGTTGCTGTCATCGTCTTCTCTAACACTGGCAAGCTTTTTGAGTTTTCCAGTGCTGGTATGAAGCAAACTATTGCAAGATACAGCAAGTGTTATGAGTCTTCAGAGACCGCTCTGGTAGAATCAAGGGCAGAGGAGGATGACCCTAAGGATGTGGATGTTCTAAAAGATGAACTTGAGAAGCTACAACAGAATCAATTGCGTCTGTTGGGCAATGACTTGTCTAGTTTGAGCTTGACAGAATTGCAGAAACTAGAAAATCAATTAACTGAAGGATTATTTTCAGTGAAGGAGAAAAAGGACAAATTACTGATGGAGCAACTAGAGCAATCAAGAGTAAAGGAACAGCGTGCTATACACGAGAATGAAACCTTGCGCAAACAGGTTGAGGAGCTTCAGCGTTTATTTCCCCAAGCTGATCATGCAGTTCCATCTTATCTCGACTATTGTCCTGTAGAAAAACAGAACTCCCCTGTGTACCATGGTGCCAAAAGCCCCGATTTGGTCAGCAATTTCGCAATTGACAATGGAGATTCTGACACTACATTGCAATTAGGGCTGCCAAGCGATACATATCGCAAGAGGAAGGCTCCAGAAAGAGAAAGCCACTCTAATGACTCAGGGAGCCAACTAGGCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0004601 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009636 GO:0009685 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009900 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010033 GO:0010047 GO:0010154 GO:0010227 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016209 GO:0016491 GO:0016684 GO:0019219 GO:0019222 GO:0019752 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042445 GO:0042447 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046395 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0055114 GO:0060255 GO:0060860 GO:0060862 GO:0060867 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080050 GO:0080090 GO:0090567 GO:0097159 GO:0097237 GO:0098754 GO:0098869 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990748 GO:2000026 GO:2000028 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000692 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

258

Amino Acids

29.2

Weight (kDa)

6.18

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 14 - 61 1.7e-26 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 91 - 175 7.8e-19 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 512
AccB1I GGYRCC 1 cut(s) 620
AccBSI CCGCTC 1 cut(s) 248
AccI GTMKAC 1 cut(s) 61
AciI CCGC 1 cut(s) 246
AcuI CTGAAG 3 cut(s) 222, 426, 515
AfaI GTAC 1 cut(s) 614
AfiI CCNNNNNNNGG 1 cut(s) 637
AluBI AGCT 6 cut(s) 107, 172, 319, 369, 529, 551
AluI AGCT 6 cut(s) 107, 172, 319, 369, 529, 551
Alw26I GTCTC 1 cut(s) 236
AoxI GGCC 1 cut(s) 769
ApeKI GCWGC 1 cut(s) 694
AspLEI GCGC 1 cut(s) 513
AxyI CCTNAGG 1 cut(s) 282
BanI GGYRCC 1 cut(s) 620
BauI CACGAG 1 cut(s) 494
BbsI GAAGAC 2 cut(s) 145, 228
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 681
BccI CCATC 2 cut(s) 442, 574
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 4 cut(s) 360, 389, 458, 767
BfmI CTRYAG 1 cut(s) 588
BglI GCCNNNNNGGC 1 cut(s) 768
BisI GCNGC 1 cut(s) 695
BlsI GCNGC 1 cut(s) 696
BmiI GGNNCC 3 cut(s) 622, 726, 761
BmsI GCATC 1 cut(s) 121
BoxI GACNNNNGTC 1 cut(s) 582
BpiI GAAGAC 2 cut(s) 145, 228
BplI GAGNNNNNCTC 2 cut(s) 709, 741
BpmI CTGGAG 1 cut(s) 711
Bpu10I CCTNAGC 2 cut(s) 108, 135
BpuEI CTTGAG 2 cut(s) 83, 332
BsaBI GATNNNNATC 2 cut(s) 32, 708
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 616
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse1I ACTGG 2 cut(s) 169, 186
Bse21I CCTNAGG 1 cut(s) 282
Bse3DI GCAATG 2 cut(s) 355, 680
Bse8I GATNNNNATC 2 cut(s) 32, 708
BseDI CCNNGG 1 cut(s) 616
BseGI GGATG 3 cut(s) 280, 292, 298
BseJI GATNNNNATC 2 cut(s) 32, 708
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 2 cut(s) 355, 680
BseMII CTCAG 3 cut(s) 122, 126, 768
BseNI ACTGG 2 cut(s) 169, 186
BseRI GAGGAG 2 cut(s) 284, 539
BseXI GCAGC 1 cut(s) 681
BshFI GGCC 1 cut(s) 771
BshNI GGYRCC 1 cut(s) 620
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 1 cut(s) 236
BsnI GGCC 1 cut(s) 771
Bso31I GGTCTC 1 cut(s) 236
Bsp143I GATC 2 cut(s) 33, 553
Bsp19I CCATGG 1 cut(s) 616
BspACI CCGC 1 cut(s) 246
BspANI GGCC 1 cut(s) 771
BspCNI CTCAG 3 cut(s) 121, 127, 767
BspLI GGNNCC 3 cut(s) 622, 726, 761
BspT107I GGYRCC 1 cut(s) 620
BspTNI GGTCTC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 355, 680
BsrI ACTGG 2 cut(s) 169, 186
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 2 cut(s) 33, 553
BssSI CACGAG 1 cut(s) 494
BssT1I CCWWGG 1 cut(s) 616
Bst2BI CACGAG 1 cut(s) 494
Bst4CI ACNGT 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 87, 170, 486
BstDEI CTNAG 4 cut(s) 108, 135, 282, 754
BstDSI CCRYGG 1 cut(s) 616
BstF5I GGATG 3 cut(s) 280, 292, 298
BstHHI GCGC 1 cut(s) 513
BstKTI GATC 2 cut(s) 36, 556
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 2 cut(s) 33, 553
BstMWI GCNNNNNNNGC 5 cut(s) 140, 460, 557, 691, 768
BstPAI GACNNNNGTC 1 cut(s) 582
BstSFI CTRYAG 1 cut(s) 588
BstV1I GCAGC 1 cut(s) 681
BstV2I GAAGAC 2 cut(s) 145, 228
Bsu36I CCTNAGG 1 cut(s) 282
BsuRI GGCC 1 cut(s) 771
BtgI CCRYGG 1 cut(s) 616
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 3 cut(s) 280, 292, 298
BtsIMutI CAGTG 3 cut(s) 162, 193, 426
Cac8I GCNNGC 3 cut(s) 87, 170, 486
CfoI GCGC 1 cut(s) 513
CseI GACGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 613
CviAII CATG 2 cut(s) 557, 617
CviQI GTAC 1 cut(s) 613
DdeI CTNAG 4 cut(s) 108, 135, 282, 754
DpnI GATC 2 cut(s) 35, 555
DpnII GATC 2 cut(s) 33, 553
Eco130I CCWWGG 1 cut(s) 616
Eco147I AGGCCT 1 cut(s) 771
Eco31I GGTCTC 1 cut(s) 236
Eco57I CTGAAG 3 cut(s) 222, 426, 515
Eco81I CCTNAGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 616
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 2 cut(s) 560, 620
FaiI YATR 6 cut(s) 197, 231, 491, 558, 618, 709
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 2 cut(s) 556, 616
FbaI TGATCA 1 cut(s) 553
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 695
FokI GGATG 3 cut(s) 287, 299, 305
Fsp4HI GCNGC 1 cut(s) 695
FspBI CTAG 4 cut(s) 360, 389, 458, 767
FspI TGCGCA 1 cut(s) 512
GlaI GCGC 1 cut(s) 512
GluI GCNGC 1 cut(s) 695
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 1 cut(s) 771
HgaI GACGC 1 cut(s) 326
HhaI GCGC 1 cut(s) 513
Hin1II CATG 2 cut(s) 560, 620
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 5 cut(s) 233, 257, 328, 668, 752
Hpy166II GTNNAC 2 cut(s) 62, 613
Hpy188I TCNGA 2 cut(s) 241, 673
Hpy188III TCNNGA 6 cut(s) 37, 100, 110, 468, 575, 728
Hpy8I GTNNAC 2 cut(s) 62, 613
HpyAV CCTTC 3 cut(s) 401, 418, 715
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 212, 382, 560, 685
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 460, 557, 691, 768
HpyF3I CTNAG 4 cut(s) 108, 135, 282, 754
Hsp92II CATG 2 cut(s) 560, 620
HspAI GCGC 1 cut(s) 511
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 2 cut(s) 33, 553
LmnI GCTCC 4 cut(s) 451, 526, 730, 759
Lsp1109I GCAGC 1 cut(s) 681
LweI GCATC 1 cut(s) 121
MaeI CTAG 4 cut(s) 360, 389, 458, 767
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 35, 555
MbiI CCGCTC 1 cut(s) 248
MboI GATC 2 cut(s) 33, 553
MboII GAAGA 5 cut(s) 16, 37, 52, 145, 228
MfeI CAATTG 2 cut(s) 332, 654
MluCI AATT 8 cut(s) 113, 332, 377, 398, 440, 646, 654, 686
MlyI GAGTC 2 cut(s) 242, 746
MnlI CCTC 6 cut(s) 75, 130, 262, 265, 517, 711
MseI TTAA 1 cut(s) 401
MslI CAYNNNNRTG 2 cut(s) 498, 747
MunI CAATTG 2 cut(s) 332, 654
MwoI GCNNNNNNNGC 5 cut(s) 140, 460, 557, 691, 768
NcoI CCATGG 1 cut(s) 616
NdeII GATC 2 cut(s) 33, 553
NlaIII CATG 2 cut(s) 560, 620
NlaIV GGNNCC 3 cut(s) 622, 726, 761
NmuCI GTSAC 1 cut(s) 67
NsbI TGCGCA 1 cut(s) 512
PceI AGGCCT 1 cut(s) 771
PfeI GAWTC 3 cut(s) 257, 328, 668
PkrI GCNGC 1 cut(s) 696
PleI GAGTC 2 cut(s) 241, 746
PpsI GAGTC 2 cut(s) 241, 746
PshAI GACNNNNGTC 1 cut(s) 582
PspN4I GGNNCC 3 cut(s) 622, 726, 761
RsaI GTAC 1 cut(s) 614
RsaNI GTAC 1 cut(s) 613
RseI CAYNNNNRTG 2 cut(s) 498, 747
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 1 cut(s) 695
Sau3AI GATC 2 cut(s) 33, 553
SchI GAGTC 2 cut(s) 242, 746
SetI ASST 9 cut(s) 109, 141, 174, 321, 371, 509, 522, 531, 553
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 588
SmiMI CAYNNNNRTG 2 cut(s) 498, 747
SmlI CTYRAG 2 cut(s) 98, 311
SmoI CTYRAG 2 cut(s) 98, 311
Sse9I AATT 8 cut(s) 113, 332, 377, 398, 440, 646, 654, 686
SseBI AGGCCT 1 cut(s) 771
SsiI CCGC 1 cut(s) 246
SspMI CTAG 4 cut(s) 360, 389, 458, 767
StuI AGGCCT 1 cut(s) 771
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 576
TasI AATT 8 cut(s) 113, 332, 377, 398, 440, 646, 654, 686
TfiI GAWTC 3 cut(s) 257, 328, 668
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TscAI CASTG 3 cut(s) 169, 193, 426
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 694
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 4 cut(s) 17, 212, 321, 516
TspRI CASTG 3 cut(s) 169, 193, 426
XmiI GTMKAC 1 cut(s) 61
XspI CTAG 4 cut(s) 360, 389, 458, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.