Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003714

Physical Location & Seq

Genomic Coordinates Reverse (-)

29272058 .. 29272637

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1193800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGAAAAGAATTGAGAATGCCACAAGCCGGCAGGTGACCTTGTCCAAACGTCGAAACGGCTTGTTAAAGAAAGCTTATGAATTTTCTGTTCTTTGCGATGCTGAAGTTGCAGTCATCATCTTCTCCCAGAAGGACAGGCTCTATGAGTTCTCCAGCTCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

55

Amino Acids

6.26

Weight (kDa)

9.36

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	3 - 50	5.3e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13790 AT5G13790
fragaria_vesca	FvH4_7g01720 FvH4_7g01720 FvH4_7g01720 FvH4_7g01720
malus_domestica	MD00G1004500.v1.1 MD01G1193800.v1.1 MD02G1301400.v1.1 MD07G1022500.v1.1
prunus_persica	Prupe.2G023100_v2.0.a1 Prupe.2G023100_v2.0.a1
pyrus_communis	pycom02g25320 pycom07g01690
rosa_chinensis	RchiOBHm_Chr0c22g0500511 RchiOBHm_Chr1g0318281 RchiOBHm_Chr7g0204181 RchiOBHm_Chr7g0206821 RchiOBHm_Chr7g0207131
rosa_laevigata	RLG00000030549
rosa_multiflora	Rmu_ssc0000308.1_g000004
rosa_roxburghii	Rroxscaffold_4G00329440 Rroxscaffold_4G00329720
rosa_rugosa	Rorug01G0019900 Rorug01G0019900
rosa_samantha	Rh1AG032000 Rh1BG027500 Rh1CG030400 Rh1CG044100 Rh1DG039500 Rh3AG323900 Rh3BG361900 Rh4CG066600
rosa_wichuraiana	Rw1G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
Acc36I	ACCTGC	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	27
AluBI	AGCT	2 cut(s)	74, 156
AluI	AGCT	2 cut(s)	74, 156
ApoI	RAATTY	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	73
BfuAI	ACCTGC	1 cut(s)	22
BmsI	GCATC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	151
BspMI	ACCTGC	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	159
BstEII	GGTNACC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstPI	GGTNACC	1 cut(s)	34
BtgZI	GCGATG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	27
CviJI	RGCY	5 cut(s)	27, 60, 74, 139, 156
CviKI_1	RGCY	5 cut(s)	27, 60, 74, 139, 156
DdeI	CTNAG	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	123
Eco91I	GGTNACC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	34
FaiI	YATR	2 cut(s)	78, 144
GsuI	CTGGAG	1 cut(s)	136
HapII	CCGG	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	72
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	49
KroI	GCCGGC	1 cut(s)	27
KroNI	GCCGGC	1 cut(s)	29
LpnPI	CCDG	4 cut(s)	17, 41, 121, 140
LweI	GCATC	1 cut(s)	88
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	34
MboII	GAAGA	1 cut(s)	112
MluCI	AATT	2 cut(s)	9, 80
MroNI	GCCGGC	1 cut(s)	27
MseI	TTAA	1 cut(s)	65
MspI	CCGG	1 cut(s)	28
Mva1269I	GAATGC	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	107
NaeI	GCCGGC	1 cut(s)	29
NgoMIV	GCCGGC	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	34
PaqCI	CACCTGC	1 cut(s)	22
PctI	GAATGC	1 cut(s)	22
PdiI	GCCGGC	1 cut(s)	29
PflFI	GACNNNGTC	1 cut(s)	40
PspEI	GGTNACC	1 cut(s)	34
PsyI	GACNNNGTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	65
SetI	ASST	5 cut(s)	36, 41, 52, 76, 158
SfaNI	GCATC	1 cut(s)	88
SgeI	CNNG	7 cut(s)	36, 40, 44, 52, 73, 139, 148
Sse9I	AATT	2 cut(s)	9, 80
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	52
TasI	AATT	2 cut(s)	9, 80
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	17, 93
Tth111I	GACNNNGTC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.