Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003714

Physical Location & Seq

Genomic Coordinates Forward (+)

4608460 .. 4613210

Gene Structure 4751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G002550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAGAAAAAAATGGGTAGGGGGAAGATTGAGATCAAGAAGATTGAGAACACCAACAGTAGACAAGTCACATTCTCGAAGAGGCGTGCTGGATTACTCAAGAAAGCTCAGGAATTGGCTATTCTCTGCGATGCTGAGGTTGCTGTCATCGTCTTCTCTAACACTGGCAAGCTTTTTGAGTTTTCCAGTGCTGGTATGAAGCGAACTATTGCAAGATACAGCAAGTGTTATGAGTCTTCAGAGACCGCTCTGGTAGAATCAAGGGCAGAGGAGGATGCCGTGGATGTTCTAAAAGATGAACTTGAGAAGCTACAACAGAATCAATTGCGTCTGTTGGGCAATGACTTGTCTAGTTTGAGCTTGAAAGAATTGCAGAAACTAGAAAATCAATTAACTGAAGGATTATTTTCAGTGAAGGAGAAAAAGGAAAAATTACTGATGGAGCAACTAGAGCAATCAAGAGTAAAGGAACAGCGTGCTATACACGAGAATGAAACCTTGCGCAAACAGGCATACAGCATTCTTCTTGCTATGCAGATTTCAGTATTGAATATAACTTTCCTTGGAGTAAATATATACTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0004601 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009636 GO:0009685 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009900 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010033 GO:0010047 GO:0010154 GO:0010227 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016209 GO:0016491 GO:0016684 GO:0019219 GO:0019222 GO:0019752 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042445 GO:0042447 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046395 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0055114 GO:0060255 GO:0060860 GO:0060862 GO:0060867 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080050 GO:0080090 GO:0090567 GO:0097159 GO:0097237 GO:0098754 GO:0098869 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990748 GO:2000026 GO:2000028 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000692 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

195

Amino Acids

22.3

Weight (kDa)

9.22

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	14 - 61	1.1e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	90 - 170	1.4e-18	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13790 AT5G13790
fragaria_vesca	FvH4_7g01720 FvH4_7g01720 FvH4_7g01720 FvH4_7g01720
malus_domestica	MD00G1004500.v1.1 MD01G1193800.v1.1 MD02G1301400.v1.1 MD07G1022500.v1.1
prunus_persica	Prupe.2G023100_v2.0.a1 Prupe.2G023100_v2.0.a1
pyrus_communis	pycom02g25320 pycom07g01690
rosa_chinensis	RchiOBHm_Chr0c22g0500511 RchiOBHm_Chr1g0318281 RchiOBHm_Chr7g0204181 RchiOBHm_Chr7g0206821 RchiOBHm_Chr7g0207131
rosa_laevigata	RLG00000030549
rosa_multiflora	Rmu_ssc0000308.1_g000004
rosa_roxburghii	Rroxscaffold_4G00329440 Rroxscaffold_4G00329720
rosa_rugosa	Rorug01G0019900 Rorug01G0019900
rosa_samantha	Rh1AG032000 Rh1BG027500 Rh1CG030400 Rh1CG044100 Rh1DG039500 Rh3AG323900 Rh3BG361900 Rh4CG066600
rosa_wichuraiana	Rw1G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	503
AccBSI	CCGCTC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	61
AciI	CCGC	1 cut(s)	246
AcuI	CTGAAG	2 cut(s)	222, 417
AgsI	TTSAA	2 cut(s)	364, 550
AluBI	AGCT	4 cut(s)	107, 172, 310, 360
AluI	AGCT	4 cut(s)	107, 172, 310, 360
Alw26I	GTCTC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	504
BauI	CACGAG	1 cut(s)	485
BbsI	GAAGAC	2 cut(s)	145, 228
BbvCI	CCTCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	433
BceAI	ACGGC	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	3 cut(s)	351, 380, 449
BmsI	GCATC	2 cut(s)	121, 265
BpiI	GAAGAC	2 cut(s)	145, 228
Bpu10I	CCTNAGC	2 cut(s)	108, 135
BpuEI	CTTGAG	2 cut(s)	83, 323
BsaBI	GATNNNNATC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	279, 562
Bse1I	ACTGG	2 cut(s)	169, 186
Bse3DI	GCAATG	1 cut(s)	346
Bse8I	GATNNNNATC	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	279, 562
BseGI	GGATG	2 cut(s)	280, 289
BseJI	GATNNNNATC	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	2 cut(s)	122, 126
BseNI	ACTGG	2 cut(s)	169, 186
BseRI	GAGGAG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	519
Bso31I	GGTCTC	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	246
BspCNI	CTCAG	2 cut(s)	121, 127
BspTNI	GGTCTC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	2 cut(s)	169, 186
BssECI	CCNNGG	2 cut(s)	279, 562
BssMI	GATC	1 cut(s)	33
BssSI	CACGAG	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	562
Bst2BI	CACGAG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	87, 170, 477
BstDEI	CTNAG	2 cut(s)	108, 135
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	280, 289
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 451
BstV2I	GAAGAC	2 cut(s)	145, 228
BtgI	CCRYGG	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	280, 289
BtsIMutI	CAGTG	3 cut(s)	162, 193, 417
Cac8I	GCNNGC	3 cut(s)	87, 170, 477
CfoI	GCGC	1 cut(s)	504
CseI	GACGC	1 cut(s)	317
CviJI	RGCY	5 cut(s)	107, 119, 172, 310, 360
CviKI_1	RGCY	5 cut(s)	107, 119, 172, 310, 360
DdeI	CTNAG	2 cut(s)	108, 135
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	562
Eco31I	GGTCTC	1 cut(s)	236
Eco57I	CTGAAG	2 cut(s)	222, 417
EcoT14I	CCWWGG	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	562
FaiI	YATR	8 cut(s)	197, 231, 482, 514, 533, 554, 575, 577
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FblI	GTMKAC	1 cut(s)	61
FokI	GGATG	2 cut(s)	287, 296
FspBI	CTAG	3 cut(s)	351, 380, 449
FspI	TGCGCA	1 cut(s)	503
GlaI	GCGC	1 cut(s)	503
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	504
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	3 cut(s)	233, 257, 319
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	5 cut(s)	37, 76, 100, 110, 459
Hpy8I	GTNNAC	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	392, 409
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	212, 373, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 451
HpyF3I	CTNAG	2 cut(s)	108, 135
HspAI	GCGC	1 cut(s)	502
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	7 cut(s)	75, 95, 150, 177, 199, 236, 494
LweI	GCATC	2 cut(s)	121, 265
MaeI	CTAG	3 cut(s)	351, 380, 449
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	35
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	1 cut(s)	33
MboII	GAAGA	7 cut(s)	16, 37, 52, 91, 145, 228, 515
MfeI	CAATTG	1 cut(s)	323
MluCI	AATT	5 cut(s)	113, 323, 368, 389, 431
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	4 cut(s)	75, 130, 262, 265
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	489
MunI	CAATTG	1 cut(s)	323
Mva1269I	GAATGC	1 cut(s)	519
MwoI	GCNNNNNNNGC	2 cut(s)	140, 451
NdeII	GATC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	67
NsbI	TGCGCA	1 cut(s)	503
PctI	GAATGC	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	257, 319
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	1 cut(s)	392
Sau3AI	GATC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	242
SetI	ASST	6 cut(s)	109, 141, 174, 312, 362, 500
SfaNI	GCATC	2 cut(s)	121, 265
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	98, 302
SmoI	CTYRAG	2 cut(s)	98, 302
Sse9I	AATT	5 cut(s)	113, 323, 368, 389, 431
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	3 cut(s)	351, 380, 449
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	77
TasI	AATT	5 cut(s)	113, 323, 368, 389, 431
TfiI	GAWTC	2 cut(s)	257, 319
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	3 cut(s)	169, 193, 417
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	4 cut(s)	17, 212, 312, 507
TspRI	CASTG	3 cut(s)	169, 193, 417
XmiI	GTMKAC	1 cut(s)	61
XspI	CTAG	3 cut(s)	351, 380, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.