Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003714

Physical Location & Seq

Genomic Coordinates Forward (+)

1877691 .. 1880792

Gene Structure 3102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1022500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAATGCAAATAGCAGACAAGTCACATTCTCAAAGAGACGTTCTGGGTTGCTCAAAAAAGCTCAGGAATTGGCTATTCTCTGTGATGCTGAGGTTGCTGTTATTATCTTCTCCAATACTGGAAGGCTTTTTGAGTTTTCCAATGCTGGGGACCAGTGGATGCTTCTGTTCCCCTTTTCCCTTTTTCTTATTTGGGTTTGTGTGAATGTCTGGGATGGTCATTTTACTTATGAAGTTGGTATGATACGAACTCTTTCAAGATACAACAAGTGTTTAGATTCGTCAGAAGATGCACCAGAAGAAGGCAAGGCAGAGATTCAGAAGCAAGACTGCAAGGAGCTGGATAATCTAAAGGATGAATATGCAAAGCTACAAAAGAAACAATTGCTGTTGGGTAAGGAGTTGACTGATTTGAGCTTGAAAGAATTGCAGCATCTAGAACAGCAATTAAATGAAGGATTATTGACAGTGAAGGAGAGGAAGGAGCAATTACTGACGGAACAACTAGAGCAATCAAGAATACAGGAACAGCGTGCTGTACTTGAGAATGAAATGTTGCGCAGACAGGTTGAGGAGCTTCGATGTTTGTTTCCACAAACTGACCGTGCAGTCCAATCGTACTTGGAATATTATCCTGTGGAGAAAACCAAATCCCTTGTAAACCATGGCGTCACAAGTAGTCCTGATTTGGTCAGTAATTTTGCATTTGAGAACGGCGATTCTGACACCACCTTGCAGCTAGGGCTGCAAAGCAATGCTTATTCTGGGAAGAGGAAAGCTCCAGAAAGAGAAGCCAACTCCAATGACTCAGGGAGCCAATTAGGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0004601 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009636 GO:0009685 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009900 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010033 GO:0010047 GO:0010154 GO:0010227 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016209 GO:0016491 GO:0016684 GO:0019219 GO:0019222 GO:0019752 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042445 GO:0042447 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046395 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0055114 GO:0060255 GO:0060860 GO:0060862 GO:0060867 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080050 GO:0080090 GO:0090567 GO:0097159 GO:0097237 GO:0098754 GO:0098869 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990748 GO:2000026 GO:2000028 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000692 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

288

Amino Acids

32.86

Weight (kDa)

5.4

Isoelectric Point (pI)

57.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	8.9e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	117 - 202	1.1e-14	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13790 AT5G13790
fragaria_vesca	FvH4_7g01720 FvH4_7g01720 FvH4_7g01720 FvH4_7g01720
malus_domestica	MD00G1004500.v1.1 MD01G1193800.v1.1 MD02G1301400.v1.1 MD07G1022500.v1.1
prunus_persica	Prupe.2G023100_v2.0.a1 Prupe.2G023100_v2.0.a1
pyrus_communis	pycom02g25320 pycom07g01690
rosa_chinensis	RchiOBHm_Chr0c22g0500511 RchiOBHm_Chr1g0318281 RchiOBHm_Chr7g0204181 RchiOBHm_Chr7g0206821 RchiOBHm_Chr7g0207131
rosa_laevigata	RLG00000030549
rosa_multiflora	Rmu_ssc0000308.1_g000004
rosa_roxburghii	Rroxscaffold_4G00329440 Rroxscaffold_4G00329720
rosa_rugosa	Rorug01G0019900 Rorug01G0019900
rosa_samantha	Rh1AG032000 Rh1BG027500 Rh1CG030400 Rh1CG044100 Rh1DG039500 Rh3AG323900 Rh3BG361900 Rh4CG066600
rosa_wichuraiana	Rw1G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	641
Acc16I	TGCGCA	1 cut(s)	593
AcyI	GRCGYC	1 cut(s)	702
AfaI	GTAC	2 cut(s)	573, 653
AfiI	CCNNNNNNNGG	2 cut(s)	180, 335
AgsI	TTSAA	2 cut(s)	291, 454
AluBI	AGCT	7 cut(s)	95, 373, 403, 450, 610, 772, 812
AluI	AGCT	7 cut(s)	95, 373, 403, 450, 610, 772, 812
Alw26I	GTCTC	1 cut(s)	64
ApeKI	GCWGC	3 cut(s)	463, 769, 778
Asp700I	GAANNNNTTC	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	594
AspS9I	GGNCC	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	184
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	475, 765, 781
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	763
BcgI	CGANNNNNNTGC	2 cut(s)	630, 664
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	3 cut(s)	470, 539, 773
BisI	GCNGC	3 cut(s)	464, 770, 779
BlsI	GCNGC	3 cut(s)	465, 771, 780
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	2 cut(s)	185, 848
BmsI	GCATC	4 cut(s)	109, 183, 313, 475
BplI	GAGNNNNNCTC	2 cut(s)	796, 828
BpmI	CTGGAG	1 cut(s)	798
Bpu10I	CCTNAGC	2 cut(s)	96, 123
BpuEI	CTTGAG	1 cut(s)	596
BsaBI	GATNNNNATC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	702
BsaJI	CCNNGG	1 cut(s)	697
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 335
Bse1I	ACTGG	2 cut(s)	157, 187
Bse3DI	GCAATG	1 cut(s)	793
Bse8I	GATNNNNATC	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	697
BseGI	GGATG	3 cut(s)	198, 253, 394
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	180, 335
BseMI	GCAATG	1 cut(s)	793
BseMII	CTCAG	3 cut(s)	110, 114, 855
BseNI	ACTGG	2 cut(s)	157, 187
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	3 cut(s)	475, 765, 781
BseYI	CCCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	660
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	180, 335
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	21
Bsp19I	CCATGG	1 cut(s)	697
BspCNI	CTCAG	3 cut(s)	109, 115, 854
BspLI	GGNNCC	2 cut(s)	185, 848
BsrDI	GCAATG	1 cut(s)	793
BsrI	ACTGG	2 cut(s)	157, 187
BssECI	CCNNGG	1 cut(s)	697
BssMI	GATC	1 cut(s)	21
BssNI	GRCGYC	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	697
Bst4CI	ACNGT	2 cut(s)	502, 638
Bst6I	CTCTTC	1 cut(s)	797
BstACI	GRCGYC	1 cut(s)	702
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	3 cut(s)	96, 123, 841
BstDSI	CCRYGG	1 cut(s)	697
BstF5I	GGATG	3 cut(s)	198, 253, 394
BstHHI	GCGC	1 cut(s)	594
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 775, 778
BstV1I	GCAGC	3 cut(s)	475, 765, 781
BtgI	CCRYGG	1 cut(s)	697
BtsCI	GGATG	3 cut(s)	198, 253, 394
BtsIMutI	CAGTG	2 cut(s)	194, 507
Cac8I	GCNNGC	1 cut(s)	567
CfoI	GCGC	1 cut(s)	594
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	1 cut(s)	691
Csp6I	GTAC	2 cut(s)	572, 652
CviAII	CATG	1 cut(s)	698
CviQI	GTAC	2 cut(s)	572, 652
DdeI	CTNAG	3 cut(s)	96, 123, 841
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
DrdI	GACNNNNNNGTC	1 cut(s)	641
DseDI	GACNNNNNNGTC	1 cut(s)	641
Eam1104I	CTCTTC	1 cut(s)	797
EarI	CTCTTC	1 cut(s)	797
Eco130I	CCWWGG	1 cut(s)	697
Eco47I	GGWCC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	697
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	1 cut(s)	701
FaiI	YATR	4 cut(s)	264, 275, 396, 699
FalI	AAGNNNNNCTT	2 cut(s)	775, 807
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	1 cut(s)	697
Fnu4HI	GCNGC	3 cut(s)	464, 770, 779
FokI	GGATG	3 cut(s)	205, 260, 401
Fsp4HI	GCNGC	3 cut(s)	464, 770, 779
FspBI	CTAG	3 cut(s)	470, 539, 773
FspI	TGCGCA	1 cut(s)	593
GlaI	GCGC	1 cut(s)	593
GluI	GCNGC	3 cut(s)	464, 770, 779
GsaI	CCCAGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	798
HgaI	GACGC	1 cut(s)	691
HhaI	GCGC	1 cut(s)	594
Hin1I	GRCGYC	1 cut(s)	702
Hin1II	CATG	1 cut(s)	701
Hin6I	GCGC	1 cut(s)	592
HinP1I	GCGC	1 cut(s)	592
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	4 cut(s)	311, 349, 752, 839
Hpy166II	GTNNAC	2 cut(s)	438, 694
Hpy188I	TCNGA	3 cut(s)	319, 354, 757
Hpy188III	TCNNGA	7 cut(s)	25, 98, 291, 470, 549, 716, 815
Hpy8I	GTNNAC	2 cut(s)	438, 694
HpyAV	CCTTC	5 cut(s)	150, 329, 482, 499, 508
HpyCH4III	ACNGT	2 cut(s)	502, 638
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	9 cut(s)	41, 326, 366, 398, 463, 641, 737, 769, 781
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 775, 778
HpyF3I	CTNAG	3 cut(s)	96, 123, 841
HpySE526I	ACGT	1 cut(s)	73
Hsp92I	GRCGYC	1 cut(s)	702
Hsp92II	CATG	1 cut(s)	701
HspAI	GCGC	1 cut(s)	592
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	5 cut(s)	370, 517, 607, 817, 846
Lsp1109I	GCAGC	3 cut(s)	475, 765, 781
LweI	GCATC	4 cut(s)	109, 183, 313, 475
MaeI	CTAG	3 cut(s)	470, 539, 773
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	2 cut(s)	55, 703
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	5 cut(s)	25, 133, 332, 344, 814
MfeI	CAATTG	1 cut(s)	416
MluCI	AATT	7 cut(s)	101, 416, 458, 479, 521, 730, 851
MlyI	GAGTC	1 cut(s)	833
MnlI	CCTC	5 cut(s)	21, 118, 504, 598, 798
MroXI	GAANNNNTTC	1 cut(s)	286
MseI	TTAA	1 cut(s)	482
MunI	CAATTG	1 cut(s)	416
Mva1269I	GAATGC	1 cut(s)	43
MwoI	GCNNNNNNNGC	3 cut(s)	128, 775, 778
NcoI	CCATGG	1 cut(s)	697
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	1 cut(s)	701
NlaIV	GGNNCC	2 cut(s)	185, 848
NmuCI	GTSAC	2 cut(s)	55, 703
NsbI	TGCGCA	1 cut(s)	593
PctI	GAATGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	286
PfeI	GAWTC	3 cut(s)	311, 349, 752
PkrI	GCNGC	3 cut(s)	465, 771, 780
PleI	GAGTC	1 cut(s)	833
PpsI	GAGTC	1 cut(s)	833
PspFI	CCCAGC	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	185, 848
PspPI	GGNCC	1 cut(s)	184
RsaI	GTAC	2 cut(s)	573, 653
RsaNI	GTAC	2 cut(s)	572, 652
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	3 cut(s)	464, 770, 779
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	833
SfaNI	GCATC	4 cut(s)	109, 183, 313, 475
SinI	GGWCC	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	7 cut(s)	101, 416, 458, 479, 521, 730, 851
SspI	AATATT	1 cut(s)	662
SspMI	CTAG	3 cut(s)	470, 539, 773
StyI	CCWWGG	1 cut(s)	697
TaaI	ACNGT	2 cut(s)	502, 638
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	613
TasI	AATT	7 cut(s)	101, 416, 458, 479, 521, 730, 851
TatI	WGTACW	1 cut(s)	571
TfiI	GAWTC	3 cut(s)	311, 349, 752
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TscAI	CASTG	2 cut(s)	194, 507
TseFI	GTSAC	2 cut(s)	55, 703
TseI	GCWGC	3 cut(s)	463, 769, 778
Tsp45I	GTSAC	2 cut(s)	55, 703
TspDTI	ATGAA	4 cut(s)	279, 405, 501, 597
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	2 cut(s)	194, 507
VpaK11BI	GGWCC	1 cut(s)	184
XbaI	TCTAGA	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	286
XspI	CTAG	3 cut(s)	470, 539, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.