Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003714

Physical Location & Seq

Genomic Coordinates Reverse (-)

21781496 .. 21782435

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18274

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAAGAAAAAAATGGGTAGGGGGAAGATTGAAATCAAGAAGATTGAGAACACCAACAGCAGACAAGTCACATTCTCAAAGAGGCGTGCTGGATTACTCAAGAAAGCTCAGGAATTGGCTATTCTCTGCGATGCTGAGGTTGTTGTCATCGTCTTCTCTAACACTGGCAAGCTTTTTGAGTTTTCCAGTGCTGGTGGGTGCTTCTGTTTCCCTTGTTTTCTTTTGGGTTCGTGTAAATGTCAATCCCTACATTGTTGCTCAATAGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0004601 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009636 GO:0009685 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009900 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010033 GO:0010047 GO:0010154 GO:0010227 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016209 GO:0016491 GO:0016684 GO:0019219 GO:0019222 GO:0019752 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042445 GO:0042447 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046395 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0055114 GO:0060255 GO:0060860 GO:0060862 GO:0060867 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080050 GO:0080090 GO:0090567 GO:0097159 GO:0097237 GO:0098754 GO:0098869 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990748 GO:2000026 GO:2000028 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000692 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

90

Amino Acids

9.92

Weight (kDa)

9.41

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	14 - 61	7.6e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13790 AT5G13790
fragaria_vesca	FvH4_7g01720 FvH4_7g01720 FvH4_7g01720 FvH4_7g01720
malus_domestica	MD00G1004500.v1.1 MD01G1193800.v1.1 MD02G1301400.v1.1 MD07G1022500.v1.1
prunus_persica	Prupe.2G023100_v2.0.a1 Prupe.2G023100_v2.0.a1
pyrus_communis	pycom02g25320 pycom07g01690
rosa_chinensis	RchiOBHm_Chr0c22g0500511 RchiOBHm_Chr1g0318281 RchiOBHm_Chr7g0204181 RchiOBHm_Chr7g0206821 RchiOBHm_Chr7g0207131
rosa_laevigata	RLG00000030549
rosa_multiflora	Rmu_ssc0000308.1_g000004
rosa_roxburghii	Rroxscaffold_4G00329440 Rroxscaffold_4G00329720
rosa_rugosa	Rorug01G0019900 Rorug01G0019900
rosa_samantha	Rh1AG032000 Rh1BG027500 Rh1CG030400 Rh1CG044100 Rh1DG039500 Rh3AG323900 Rh3BG361900 Rh4CG066600
rosa_wichuraiana	Rw1G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	32
AluBI	AGCT	2 cut(s)	107, 172
AluI	AGCT	2 cut(s)	107, 172
BbsI	GAAGAC	1 cut(s)	145
BbvCI	CCTCAGC	1 cut(s)	135
BmsI	GCATC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	145
Bpu10I	CCTNAGC	2 cut(s)	108, 135
BpuEI	CTTGAG	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	169, 186
Bse8I	GATNNNNATC	1 cut(s)	32
BseJI	GATNNNNATC	1 cut(s)	32
BseMII	CTCAG	2 cut(s)	122, 126
BseNI	ACTGG	2 cut(s)	169, 186
BspCNI	CTCAG	2 cut(s)	121, 127
BsrI	ACTGG	2 cut(s)	169, 186
BstC8I	GCNNGC	2 cut(s)	87, 170
BstDEI	CTNAG	2 cut(s)	108, 135
BstV2I	GAAGAC	1 cut(s)	145
BtgZI	GCGATG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	162, 193
Cac8I	GCNNGC	2 cut(s)	87, 170
CviJI	RGCY	3 cut(s)	107, 119, 172
CviKI_1	RGCY	3 cut(s)	107, 119, 172
DdeI	CTNAG	2 cut(s)	108, 135
HindIII	AAGCTT	1 cut(s)	170
Hpy188III	TCNNGA	3 cut(s)	37, 100, 110
HpyF3I	CTNAG	2 cut(s)	108, 135
LpnPI	CCDG	5 cut(s)	75, 95, 150, 177, 199
LweI	GCATC	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	67
MboII	GAAGA	4 cut(s)	16, 37, 52, 145
MluCI	AATT	1 cut(s)	113
MnlI	CCTC	2 cut(s)	75, 130
NmuCI	GTSAC	1 cut(s)	67
SetI	ASST	3 cut(s)	109, 141, 174
SfaNI	GCATC	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	113
TasI	AATT	1 cut(s)	113
TscAI	CASTG	2 cut(s)	169, 193
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	169, 193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.