Rh1DG039500
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003714
Physical Location & Seq
Reverse (-)
6312580 .. 6317312
4733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG039500.1

Sequence Viewer

Length: 330 bp
ATGGAGCAACTAGAGCAATCAAGAGTAAAGGAACAGCGTGCTATACACGAGAATGAAACCTTGCGCAAACAGGTTGAGGAGCTTCAGCGTTTATTTCCCCAAGCTGATCATGCAGTTCCATCTTATCTCGACTATTGTCCTGTAGAAAAACAGAACTCCCCTGTGTACCATGGTGCCAAAAGCCCCGATTTGGTCAGCAATTTGGCAATTGACAATGGAGATTCTGACACTACATTGCAATTAGGGCTGCCAAGCGATACATATCGCAAGAGGAAGGCTCCAGAAAGAGAAAGCCACTCTAATGACTCAGGGAGCCAACTAGGCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0004601 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009636 GO:0009685 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009900 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010033 GO:0010047 GO:0010154 GO:0010227 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016209 GO:0016491 GO:0016684 GO:0019219 GO:0019222 GO:0019752 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042445 GO:0042447 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046395 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0055114 GO:0060255 GO:0060860 GO:0060862 GO:0060867 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080050 GO:0080090 GO:0090567 GO:0097159 GO:0097237 GO:0098754 GO:0098869 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990748 GO:2000026 GO:2000028 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000692 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

109

Amino Acids

12.33

Weight (kDa)

5.29

Isoelectric Point (pI)

65.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 190
AluBI AGCT 2 cut(s) 82, 104
AluI AGCT 2 cut(s) 82, 104
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 1 cut(s) 247
AspLEI GCGC 1 cut(s) 66
BanI GGYRCC 1 cut(s) 173
BauI CACGAG 1 cut(s) 47
BbvI GCAGC 1 cut(s) 234
BccI CCATC 1 cut(s) 127
BclI TGATCA 1 cut(s) 106
BfaI CTAG 2 cut(s) 11, 320
BfmI CTRYAG 1 cut(s) 141
BglI GCCNNNNNGGC 1 cut(s) 321
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
BmiI GGNNCC 3 cut(s) 175, 279, 314
BoxI GACNNNNGTC 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 262, 294
BpmI CTGGAG 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse3DI GCAATG 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 169
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 234
BshFI GGCC 1 cut(s) 324
BshNI GGYRCC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 190
BsnI GGCC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 106
Bsp19I CCATGG 1 cut(s) 169
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 1 cut(s) 320
BspLI GGNNCC 3 cut(s) 175, 279, 314
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 1 cut(s) 106
BssSI CACGAG 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 169
Bst2BI CACGAG 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 307
BstDSI CCRYGG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 4 cut(s) 13, 110, 244, 321
BstPAI GACNNNNGTC 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 234
BsuRI GGCC 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 166
CviAII CATG 2 cut(s) 110, 170
CviJI RGCY 8 cut(s) 82, 104, 183, 247, 278, 294, 315, 324
CviKI_1 RGCY 8 cut(s) 82, 104, 183, 247, 278, 294, 315, 324
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 1 cut(s) 307
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 169
Eco147I AGGCCT 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 2 cut(s) 113, 173
FaiI YATR 4 cut(s) 44, 111, 171, 262
FatI CATG 2 cut(s) 109, 169
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 248
FspBI CTAG 2 cut(s) 11, 320
FspI TGCGCA 1 cut(s) 65
GlaI GCGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 1 cut(s) 324
HhaI GCGC 1 cut(s) 66
Hin1II CATG 2 cut(s) 113, 173
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 2 cut(s) 221, 305
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 3 cut(s) 21, 128, 281
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 113, 238
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 110, 244, 321
HpyF3I CTNAG 1 cut(s) 307
Hsp92II CATG 2 cut(s) 113, 173
HspAI GCGC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 4 cut(s) 4, 79, 283, 312
LpnPI CCDG 5 cut(s) 56, 153, 174, 294, 294
Lsp1109I GCAGC 1 cut(s) 234
MaeI CTAG 2 cut(s) 11, 320
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MfeI CAATTG 1 cut(s) 207
MluCI AATT 3 cut(s) 199, 207, 239
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 2 cut(s) 70, 264
MslI CAYNNNNRTG 2 cut(s) 51, 300
MunI CAATTG 1 cut(s) 207
MwoI GCNNNNNNNGC 4 cut(s) 13, 110, 244, 321
NcoI CCATGG 1 cut(s) 169
NdeII GATC 1 cut(s) 106
NlaIII CATG 2 cut(s) 113, 173
NlaIV GGNNCC 3 cut(s) 175, 279, 314
NsbI TGCGCA 1 cut(s) 65
PceI AGGCCT 1 cut(s) 324
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 249
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PshAI GACNNNNGTC 1 cut(s) 135
PspN4I GGNNCC 3 cut(s) 175, 279, 314
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 2 cut(s) 51, 300
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 1 cut(s) 106
SchI GAGTC 1 cut(s) 299
SetI ASST 4 cut(s) 62, 75, 84, 106
SfcI CTRYAG 1 cut(s) 141
SmiMI CAYNNNNRTG 2 cut(s) 51, 300
Sse9I AATT 3 cut(s) 199, 207, 239
SseBI AGGCCT 1 cut(s) 324
SspMI CTAG 2 cut(s) 11, 320
StuI AGGCCT 1 cut(s) 324
StyI CCWWGG 1 cut(s) 169
TaqI TCGA 1 cut(s) 129
TasI AATT 3 cut(s) 199, 207, 239
TfiI GAWTC 1 cut(s) 221
TseI GCWGC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 69
XspI CTAG 2 cut(s) 11, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.