Rh1AG032000
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003714
Physical Location & Seq
Forward (+)
5752281 .. 5757101
4821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG032000.1

Sequence Viewer

Length: 582 bp
ATGAAGCAAACTATTGCAAGATACAGCAAGTGTTATGAGTCTTCAGAGACCGCTCTGGTAGAATCAAGGGCAGAGGAGGATGACCCTAAGGATGTGGATGTTCTAAAAGATGAACTTGAGAAGCTACAACAGAATCAATTGCGTCTGTTGGGCAATGACTTGTCTAGTTTGAGCTTGACAGAATTGCAGAAACTAGAAAATCAATTAACTGAAGGATTATTTTCAGTGAAGGAGAAAAAGGACAAATTACTGATGGAGCAACTAGAGCAATCAAGAGTAAAGGAACAGCGTGCTATACACGAGAATGAAACCTTGCGCAAACAGGTTGAGGAGCTTCAGCGTTTATTTCCCCAAGCTGATCATGCAGTTCCATCTTATCTCGACTATTGTCCTGTAGAAAAACAGAACTCCCCTGTGTACCATGGTGCCAAAAGCCCCGATTTGGTCAGCAATTTCGCAATTGACAATGGAGATTCTGACACTACATTGCAATTAGGGCTGCCAAGCGATACATATCGCAAGAGGAAGGCTCCAGAAAGAGAAAGCCACTCTAATGACTCAGGGAGCCAACTAGGCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0004601 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009636 GO:0009685 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009900 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010033 GO:0010047 GO:0010154 GO:0010227 GO:0010262 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016209 GO:0016491 GO:0016684 GO:0019219 GO:0019222 GO:0019752 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042445 GO:0042447 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046395 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051254 GO:0051716 GO:0055114 GO:0060255 GO:0060860 GO:0060862 GO:0060867 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0080050 GO:0080090 GO:0090567 GO:0097159 GO:0097237 GO:0098754 GO:0098869 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990748 GO:2000026 GO:2000028 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000692 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

193

Amino Acids

22.01

Weight (kDa)

4.98

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 26 - 110 4.1e-19 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 425
AccBSI CCGCTC 1 cut(s) 53
AciI CCGC 1 cut(s) 51
AcuI CTGAAG 3 cut(s) 27, 231, 320
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 442
AluBI AGCT 4 cut(s) 124, 174, 334, 356
AluI AGCT 4 cut(s) 124, 174, 334, 356
Alw26I GTCTC 1 cut(s) 41
AoxI GGCC 1 cut(s) 574
ApeKI GCWGC 1 cut(s) 499
AspLEI GCGC 1 cut(s) 318
AxyI CCTNAGG 1 cut(s) 87
BanI GGYRCC 1 cut(s) 425
BauI CACGAG 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 486
BccI CCATC 2 cut(s) 247, 379
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 4 cut(s) 165, 194, 263, 572
BfmI CTRYAG 1 cut(s) 393
BglI GCCNNNNNGGC 1 cut(s) 573
BisI GCNGC 1 cut(s) 500
BlsI GCNGC 1 cut(s) 501
BmiI GGNNCC 3 cut(s) 427, 531, 566
BoxI GACNNNNGTC 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 33
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BpmI CTGGAG 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 137
BsaBI GATNNNNATC 1 cut(s) 513
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 421
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse21I CCTNAGG 1 cut(s) 87
Bse3DI GCAATG 2 cut(s) 160, 485
Bse8I GATNNNNATC 1 cut(s) 513
BseDI CCNNGG 1 cut(s) 421
BseGI GGATG 3 cut(s) 85, 97, 103
BseJI GATNNNNATC 1 cut(s) 513
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMI GCAATG 2 cut(s) 160, 485
BseMII CTCAG 1 cut(s) 573
BseRI GAGGAG 2 cut(s) 89, 344
BseXI GCAGC 1 cut(s) 486
BshFI GGCC 1 cut(s) 576
BshNI GGYRCC 1 cut(s) 425
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 1 cut(s) 41
BsnI GGCC 1 cut(s) 576
Bso31I GGTCTC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 358
Bsp19I CCATGG 1 cut(s) 421
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 576
BspCNI CTCAG 1 cut(s) 572
BspLI GGNNCC 3 cut(s) 427, 531, 566
BspT107I GGYRCC 1 cut(s) 425
BspTNI GGTCTC 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 53
BsrDI GCAATG 2 cut(s) 160, 485
BssECI CCNNGG 1 cut(s) 421
BssMI GATC 1 cut(s) 358
BssSI CACGAG 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 421
Bst2BI CACGAG 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 87, 559
BstDSI CCRYGG 1 cut(s) 421
BstF5I GGATG 3 cut(s) 85, 97, 103
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 1 cut(s) 358
BstMWI GCNNNNNNNGC 4 cut(s) 265, 362, 496, 573
BstPAI GACNNNNGTC 1 cut(s) 387
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 1 cut(s) 486
BstV2I GAAGAC 1 cut(s) 33
Bsu36I CCTNAGG 1 cut(s) 87
BsuRI GGCC 1 cut(s) 576
BtgI CCRYGG 1 cut(s) 421
BtsCI GGATG 3 cut(s) 85, 97, 103
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 291
CfoI GCGC 1 cut(s) 318
CseI GACGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 418
CviAII CATG 2 cut(s) 362, 422
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 87, 559
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 421
Eco147I AGGCCT 1 cut(s) 576
Eco31I GGTCTC 1 cut(s) 41
Eco57I CTGAAG 3 cut(s) 27, 231, 320
Eco81I CCTNAGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 2 cut(s) 365, 425
FaiI YATR 5 cut(s) 36, 296, 363, 423, 514
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FatI CATG 2 cut(s) 361, 421
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 500
FokI GGATG 3 cut(s) 92, 104, 110
Fsp4HI GCNGC 1 cut(s) 500
FspBI CTAG 4 cut(s) 165, 194, 263, 572
FspI TGCGCA 1 cut(s) 317
GlaI GCGC 1 cut(s) 317
GluI GCNGC 1 cut(s) 500
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 1 cut(s) 576
HgaI GACGC 1 cut(s) 131
HhaI GCGC 1 cut(s) 318
Hin1II CATG 2 cut(s) 365, 425
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HinfI GANTC 5 cut(s) 38, 62, 133, 473, 557
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 2 cut(s) 46, 478
Hpy188III TCNNGA 3 cut(s) 273, 380, 533
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 3 cut(s) 206, 223, 520
HpyCH4V TGCA 4 cut(s) 17, 187, 365, 490
HpyF10VI GCNNNNNNNGC 4 cut(s) 265, 362, 496, 573
HpyF3I CTNAG 2 cut(s) 87, 559
Hsp92II CATG 2 cut(s) 365, 425
HspAI GCGC 1 cut(s) 316
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 1 cut(s) 358
LmnI GCTCC 4 cut(s) 256, 331, 535, 564
LpnPI CCDG 6 cut(s) 41, 308, 405, 426, 546, 546
Lsp1109I GCAGC 1 cut(s) 486
MaeI CTAG 4 cut(s) 165, 194, 263, 572
MalI GATC 1 cut(s) 360
MbiI CCGCTC 1 cut(s) 53
MboI GATC 1 cut(s) 358
MboII GAAGA 1 cut(s) 33
MfeI CAATTG 2 cut(s) 137, 459
MluCI AATT 7 cut(s) 137, 182, 203, 245, 451, 459, 491
MlyI GAGTC 2 cut(s) 47, 551
MnlI CCTC 4 cut(s) 67, 70, 322, 516
MseI TTAA 1 cut(s) 206
MslI CAYNNNNRTG 2 cut(s) 303, 552
MunI CAATTG 2 cut(s) 137, 459
MwoI GCNNNNNNNGC 4 cut(s) 265, 362, 496, 573
NcoI CCATGG 1 cut(s) 421
NdeII GATC 1 cut(s) 358
NlaIII CATG 2 cut(s) 365, 425
NlaIV GGNNCC 3 cut(s) 427, 531, 566
NsbI TGCGCA 1 cut(s) 317
PceI AGGCCT 1 cut(s) 576
PfeI GAWTC 3 cut(s) 62, 133, 473
PkrI GCNGC 1 cut(s) 501
PleI GAGTC 2 cut(s) 46, 551
PpsI GAGTC 2 cut(s) 46, 551
PshAI GACNNNNGTC 1 cut(s) 387
PspN4I GGNNCC 3 cut(s) 427, 531, 566
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 2 cut(s) 303, 552
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 1 cut(s) 500
Sau3AI GATC 1 cut(s) 358
SchI GAGTC 2 cut(s) 47, 551
SetI ASST 6 cut(s) 126, 176, 314, 327, 336, 358
SfcI CTRYAG 1 cut(s) 393
SmiMI CAYNNNNRTG 2 cut(s) 303, 552
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 7 cut(s) 137, 182, 203, 245, 451, 459, 491
SseBI AGGCCT 1 cut(s) 576
SsiI CCGC 1 cut(s) 51
SspMI CTAG 4 cut(s) 165, 194, 263, 572
StuI AGGCCT 1 cut(s) 576
StyI CCWWGG 1 cut(s) 421
TaqI TCGA 1 cut(s) 381
TasI AATT 7 cut(s) 137, 182, 203, 245, 451, 459, 491
TfiI GAWTC 3 cut(s) 62, 133, 473
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 1 cut(s) 231
TseI GCWGC 1 cut(s) 499
TspDTI ATGAA 3 cut(s) 17, 126, 321
TspRI CASTG 1 cut(s) 231
XspI CTAG 4 cut(s) 165, 194, 263, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.