pycom07g01710

Protein BPS1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015679
Physical Location & Seq
Reverse (-)
1342882 .. 1343823
942 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01710.1

Sequence Viewer

Length: 942 bp
ATGTTTAACCAAATCTACTCCAAGCTGGAGAATCACCACCACCACCACAACCACCACCACCCGTCGGAACCCGCCTTATCGGCATCTCTGGATGCCTTCCAAACCCATGTTTCAAACTCCTTGAAAAAGTTGTTGCCTCTCAGTTCATCAAAATCTGCAGGGTCAGAGATTCCATCATTTCCATGGATTCAACAGTGCTTTGAGCTCCTACCCATCGTCCAAAGTGCTTTTGCAAAGCTGGTTGTGGAAGTAGATTTTCCAATGAGCAGATGGGAAGCTGCTTCTGTGGATGAGTACCTCAAATACAGTTTGAGTTTGTTGGAGCTTTGCAATTCTGTCAGTTCTTCTCTGTCTAATCTTGGGAAGGCTAGGGTTTCGCTGGCTCATGGTTTGAGCCTGGTGGAGAAATCGTCGCCTTCTTCGGCTTTGGAGCATCTGAAGGCAATCCAATTCCAACCAAAGGGTTTGAGCAACGGAATCAGATGCCAAGGAAATGAAGAGGTTGCGAAAGGAAGCTGCTTGATTAGCAAGGAAGCAGTGATTCATCAAGCTTTGGAGGTTATGCAGGGAATGGTATTCTGGCTAGGTGGGATTTTGATGTCTGGATTAGCTGGGAATCCCAAGCCATACTCGGAGGTGAGGAATTCTGGTGGAAGGTTTGTTGACTCGTTGCTTTCGGGGTTGAATTCGAGAGTGAGTGAAATAATGGAGAGAAATGGTGGATTGAAGGAGGTGAAGGAGCTTAATGATGCCGTGACTGGCCTTGCAGCGGCAATCGGAATTGGAAAAAACGGTGGAGCAGAAGCTGAGGAATTGAGAAGAAAATTAGAAGTTTTTGAGAAGTTTGTGGACGGTTTGGGAAAGGAGGTGGATTCCGTCTTCGACAAGGTTTTGGCCGGGAGAAATCAATTGCTCAATGGCCTTCCACAGCAAAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1 DUF241

Protein Analysis

314

Amino Acids

34.02

Weight (kDa)

6.87

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 17 - 119 3.2e-06 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01730
malus_domestica MD02G1301300.v1.1 MD07G1022600.v1.1 MD07G1022700.v1.1
prunus_persica Prupe.2G023200_v2.0.a1
pyrus_communis pycom02g25310 pycom07g01710 pycom07g01720
rosa_chinensis RchiOBHm_Chr1g0318291
rosa_laevigata RLG00000030548
rosa_multiflora Rmu_ssc0000308.1_g000005
rosa_roxburghii Rroxscaffold_4G00329450
rosa_rugosa Rorug01G0019900
rosa_samantha Rh1AG032100 Rh1BG027600 Rh1DG039400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 72, 770
AcoI YGGCCR 1 cut(s) 894
AcsI RAATTY 2 cut(s) 643, 685
AcuI CTGAAG 1 cut(s) 458
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 3 cut(s) 64, 460, 769
AgsI TTSAA 5 cut(s) 114, 124, 191, 685, 727
AjnI CCWGG 1 cut(s) 396
Alw21I GWGCWC 1 cut(s) 207
AlwNI CAGNNNCTG 1 cut(s) 806
AoxI GGCC 3 cut(s) 760, 894, 919
ApeKI GCWGC 3 cut(s) 278, 516, 767
ApoI RAATTY 2 cut(s) 643, 685
AsuC2I CCSGG 1 cut(s) 898
AsuHPI GGTGA 3 cut(s) 26, 649, 745
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 871
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 807
BbvI GCAGC 3 cut(s) 265, 503, 779
BccI CCATC 3 cut(s) 181, 221, 264
BceAI ACGGC 1 cut(s) 737
BciT130I CCWGG 1 cut(s) 398
BcnI CCSGG 1 cut(s) 898
BfaI CTAG 2 cut(s) 369, 584
BfmI CTRYAG 1 cut(s) 156
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 4 cut(s) 279, 517, 768, 771
BlsI GCNGC 4 cut(s) 280, 518, 769, 772
Bme1390I CCNGG 2 cut(s) 398, 898
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 2 cut(s) 398, 898
BmsI GCATC 5 cut(s) 82, 92, 442, 473, 739
BpiI GAAGAC 1 cut(s) 871
BpmI CTGGAG 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 807
BpuMI CCSGG 1 cut(s) 898
BsaJI CCNNGG 2 cut(s) 182, 487
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 460, 769
Bse1I ACTGG 1 cut(s) 763
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 182, 487
BseGI GGATG 2 cut(s) 97, 295
BseLI CCNNNNNNNGG 3 cut(s) 64, 460, 769
BseMII CTCAG 2 cut(s) 154, 798
BseNI ACTGG 1 cut(s) 763
BseXI GCAGC 3 cut(s) 265, 503, 779
BseYI CCCAGC 1 cut(s) 611
BshFI GGCC 3 cut(s) 762, 896, 921
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 897
BslI CCNNNNNNNGG 3 cut(s) 64, 460, 769
BsnI GGCC 3 cut(s) 762, 896, 921
Bsp1286I GDGCHC 1 cut(s) 207
Bsp19I CCATGG 1 cut(s) 182
BspACI CCGC 2 cut(s) 72, 770
BspANI GGCC 3 cut(s) 762, 896, 921
BspCNI CTCAG 2 cut(s) 153, 799
BspLI GGNNCC 1 cut(s) 69
BspMAI CTGCAG 1 cut(s) 160
BsrI ACTGG 1 cut(s) 763
BssECI CCNNGG 2 cut(s) 182, 487
BssT1I CCWWGG 2 cut(s) 182, 487
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 4 cut(s) 195, 308, 794, 854
Bst6I CTCTTC 1 cut(s) 492
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 140, 807
BstDSI CCRYGG 1 cut(s) 182
BstF5I GGATG 2 cut(s) 97, 295
BstMWI GCNNNNNNNGC 2 cut(s) 80, 525
BstNI CCWGG 1 cut(s) 398
BstSCI CCNGG 2 cut(s) 396, 896
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 3 cut(s) 265, 503, 779
BstV2I GAAGAC 1 cut(s) 871
BsuRI GGCC 3 cut(s) 762, 896, 921
BtgI CCRYGG 1 cut(s) 182
BtsCI GGATG 2 cut(s) 97, 295
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 2 cut(s) 200, 543
Cac8I GCNNGC 1 cut(s) 381
CaiI CAGNNNCTG 1 cut(s) 806
Csp6I GTAC 1 cut(s) 295
CviAII CATG 3 cut(s) 107, 183, 386
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 2 cut(s) 140, 807
EaeI YGGCCR 1 cut(s) 894
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 182, 487
Eco24I GRGCYC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 205
EcoRI GAATTC 2 cut(s) 643, 685
EcoRII CCWGG 1 cut(s) 396
EcoT14I CCWWGG 2 cut(s) 182, 487
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 2 cut(s) 182, 487
FaeI CATG 3 cut(s) 110, 186, 389
FaiI YATR 5 cut(s) 108, 184, 387, 563, 628
FatI CATG 3 cut(s) 106, 182, 385
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 4 cut(s) 279, 517, 768, 771
FokI GGATG 2 cut(s) 104, 302
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 4 cut(s) 279, 517, 768, 771
FspBI CTAG 2 cut(s) 369, 584
GluI GCNGC 4 cut(s) 279, 517, 768, 771
GsaI CCCAGC 1 cut(s) 615
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 3 cut(s) 762, 896, 921
HapII CCGG 1 cut(s) 897
Hin1II CATG 3 cut(s) 110, 186, 389
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 8 cut(s) 31, 169, 187, 477, 541, 616, 665, 872
HpaII CCGG 1 cut(s) 897
HphI GGTGA 3 cut(s) 26, 649, 745
Hpy166II GTNNAC 2 cut(s) 664, 850
Hpy188I TCNGA 6 cut(s) 67, 166, 438, 482, 634, 779
Hpy188III TCNNGA 3 cut(s) 89, 603, 690
Hpy8I GTNNAC 2 cut(s) 664, 850
Hpy99I CGWCG 2 cut(s) 67, 415
HpyAV CCTTC 8 cut(s) 106, 358, 426, 433, 648, 721, 730, 932
HpyCH4III ACNGT 4 cut(s) 195, 308, 794, 854
HpyCH4V TGCA 5 cut(s) 158, 233, 330, 565, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 525
HpyF3I CTNAG 2 cut(s) 140, 807
Hsp92II CATG 3 cut(s) 110, 186, 389
LmnI GCTCC 5 cut(s) 210, 322, 430, 739, 797
Lsp1109I GCAGC 3 cut(s) 265, 503, 779
LweI GCATC 5 cut(s) 82, 92, 442, 473, 739
MaeI CTAG 2 cut(s) 369, 584
MaeIII GTNAC 1 cut(s) 754
MboII GAAGA 5 cut(s) 336, 411, 509, 831, 871
MfeI CAATTG 1 cut(s) 908
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 8 cut(s) 331, 449, 643, 685, 780, 812, 824, 908
MlyI GAGTC 1 cut(s) 659
MmeI TCCRAC 3 cut(s) 45, 300, 478
MnlI CCTC 9 cut(s) 147, 308, 493, 550, 628, 633, 724, 802, 859
MseI TTAA 2 cut(s) 6, 744
MslI CAYNNNNRTG 1 cut(s) 181
MspA1I CMGCKG 1 cut(s) 770
MspI CCGG 1 cut(s) 897
MspR9I CCNGG 2 cut(s) 398, 898
MunI CAATTG 1 cut(s) 908
MvaI CCWGG 1 cut(s) 398
MwoI GCNNNNNNNGC 2 cut(s) 80, 525
NciI CCSGG 1 cut(s) 898
NcoI CCATGG 1 cut(s) 182
NlaIII CATG 3 cut(s) 110, 186, 389
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 754
PfeI GAWTC 7 cut(s) 31, 169, 187, 477, 541, 616, 872
PkrI GCNGC 4 cut(s) 280, 518, 769, 772
PleI GAGTC 1 cut(s) 659
PpsI GAGTC 1 cut(s) 659
Psp124BI GAGCTC 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 396
PspFI CCCAGC 1 cut(s) 611
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 69
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 806
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 181
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 6, 744
SatI GCNGC 4 cut(s) 279, 517, 768, 771
SchI GAGTC 1 cut(s) 659
ScrFI CCNGG 2 cut(s) 398, 898
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 5 cut(s) 82, 92, 442, 473, 739
SfcI CTRYAG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 181
Sse9I AATT 8 cut(s) 331, 449, 643, 685, 780, 812, 824, 908
SsiI CCGC 2 cut(s) 72, 770
SspMI CTAG 2 cut(s) 369, 584
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 396, 896
StyI CCWWGG 2 cut(s) 182, 487
TaaI ACNGT 4 cut(s) 195, 308, 794, 854
TaqI TCGA 2 cut(s) 689, 882
TasI AATT 8 cut(s) 331, 449, 643, 685, 780, 812, 824, 908
TauI GCSGC 1 cut(s) 773
TfiI GAWTC 7 cut(s) 31, 169, 187, 477, 541, 616, 872
Tru1I TTAA 2 cut(s) 6, 744
Tru9I TTAA 2 cut(s) 6, 744
TscAI CASTG 2 cut(s) 200, 543
TseFI GTSAC 1 cut(s) 754
TseI GCWGC 3 cut(s) 278, 516, 767
Tsp45I GTSAC 1 cut(s) 754
TspDTI ATGAA 3 cut(s) 135, 510, 533
TspGWI ACGGA 2 cut(s) 489, 865
TspRI CASTG 2 cut(s) 200, 543
XapI RAATTY 2 cut(s) 643, 685
XcmI CCANNNNNNNNNTGG 2 cut(s) 180, 267
XspI CTAG 2 cut(s) 369, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.