Rh1DG039400

Protein BPS1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0015679
Physical Location & Seq
Forward (+)
6310614 .. 6312459
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG039400.1

Sequence Viewer

Length: 966 bp
ATGGTTCTCTTGTTACAAAAGATTGACAAACTCTACTCAAAGCTGGAGAATTACCACCACAACCACCATCACCACCACAATCACAACCATCAATCACAAGCCTTATCATCTTCTCTGGAGGCTTTTGATACCCTTGTTTCCAATTCCTTTAACAAATTGTTTTCGAGCTCGAAATCAGCAGGATCTGAAGTTCCATCATTTCCATGGATCCAGCAGTGTTTTGAGCTCATACCCATCATCAACAATGGTTTTGCCAAGCTAGTTGTGGCCATAGACTATCCCATGACTAAATGGGAAGCTGATTCTGTGGAAGAGTATCTCAAATACACCTTGAATTTGCTAGAGTTGTGCAACTCCATCACTTGCTCTCTTTCTCAATTTGGGAAAGAGAGGCTTTCACTGTCTCATGGTTTGAATCTTGTGGAGAGTTCATCACCTTCTTTGGCTGTGGAGCATCTGAGACAAATTCAAGTCCAACCAAAGAGTTTGAGCAAGGATTTCAGATTCCAAGGAAATGAAGAACATGGGAAAGAAAGGTTTCCTATTACCAAGAAGTCAGTTATTCATCAAGCTTTGGTGGTTATGGAGGGGATGGTGTTTTGGGTATGTGGGATTTTGATGACTGGTTTGGTTGGGGATTCCAAGCCATACTTGGAGATGAGAAAATCTGGTGGAAGGTTAGTAAGTTCATTGATTTCTGGGTTGGATTTGAGTGTGGGTGAAGTAATTGTGGAGAGAAGAGGCATGTTGAAAGAGGTGAAAGAGATTAATGACTCGGTTGCAGCCCTTGTTTCTGCTATTGGGATTGGGAAAAGGAGTAAAGCAGAAGCTGAGGAATTACAAAGAAGATTAGAGGTGTTTGAGAAGATGGTGGAGGGTTTGGGAAAAGAGGTGGATTGTCTTTTCAATAAGGTTTTGGCTGGAAGAAATCAACTGCTCAATGGATTTCAACACCAAAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1 DUF241

Protein Analysis

321

Amino Acids

36.11

Weight (kDa)

7.26

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 100 - 314 4.3e-08 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01730
malus_domestica MD02G1301300.v1.1 MD07G1022600.v1.1 MD07G1022700.v1.1
prunus_persica Prupe.2G023200_v2.0.a1
pyrus_communis pycom02g25310 pycom07g01710 pycom07g01720
rosa_chinensis RchiOBHm_Chr1g0318291
rosa_laevigata RLG00000030548
rosa_multiflora Rmu_ssc0000308.1_g000005
rosa_roxburghii Rroxscaffold_4G00329450
rosa_rugosa Rorug01G0019900
rosa_samantha Rh1AG032100 Rh1BG027600 Rh1DG039400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 190, 202, 215
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 2 cut(s) 334, 465
AcuI CTGAAG 1 cut(s) 207
AgsI TTSAA 6 cut(s) 334, 415, 470, 751, 907, 950
AloI GAACNNNNNNTCC 2 cut(s) 174, 206
AluBI AGCT 7 cut(s) 43, 168, 226, 259, 299, 572, 830
AluI AGCT 7 cut(s) 43, 168, 226, 259, 299, 572, 830
Alw21I GWGCWC 2 cut(s) 170, 228
Alw26I GTCTC 2 cut(s) 408, 454
AlwI GGATC 3 cut(s) 190, 202, 215
AlwNI CAGNNNCTG 2 cut(s) 185, 830
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 782
ApoI RAATTY 2 cut(s) 334, 465
AseI ATTAAT 1 cut(s) 768
Asp700I GAANNNNTTC 1 cut(s) 537
AsuHPI GGTGA 4 cut(s) 62, 426, 731, 769
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BalI TGGCCA 1 cut(s) 269
BamHI GGATCC 1 cut(s) 207
BanII GRGCYC 2 cut(s) 170, 228
Bbv12I GWGCWC 2 cut(s) 170, 228
BbvCI CCTCAGC 1 cut(s) 831
BbvI GCAGC 1 cut(s) 794
BccI CCATC 7 cut(s) 75, 96, 202, 242, 365, 586, 862
BcoDI GTCTC 2 cut(s) 408, 454
BfaI CTAG 2 cut(s) 260, 341
BisI GCNGC 1 cut(s) 783
BlsI GCNGC 1 cut(s) 784
BmiI GGNNCC 1 cut(s) 209
BmsI GCATC 1 cut(s) 463
BpmI CTGGAG 2 cut(s) 65, 137
Bpu10I CCTNAGC 1 cut(s) 831
BsaJI CCNNGG 2 cut(s) 203, 508
Bse1I ACTGG 1 cut(s) 628
BseDI CCNNGG 2 cut(s) 203, 508
BseGI GGATG 1 cut(s) 597
BseMII CTCAG 2 cut(s) 449, 822
BseNI ACTGG 1 cut(s) 628
BseXI GCAGC 1 cut(s) 794
BshFI GGCC 1 cut(s) 269
BsiHKAI GWGCWC 2 cut(s) 170, 228
BsmAI GTCTC 2 cut(s) 408, 454
BsnI GGCC 1 cut(s) 269
Bsp1286I GDGCHC 2 cut(s) 170, 228
Bsp143I GATC 2 cut(s) 182, 207
Bsp19I CCATGG 1 cut(s) 203
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 2 cut(s) 450, 823
BspLI GGNNCC 1 cut(s) 209
BspPI GGATC 3 cut(s) 190, 202, 215
BsrI ACTGG 1 cut(s) 628
BssECI CCNNGG 2 cut(s) 203, 508
BssMI GATC 2 cut(s) 182, 207
BssT1I CCWWGG 2 cut(s) 203, 508
Bst4CI ACNGT 1 cut(s) 402
Bst6I CTCTTC 2 cut(s) 306, 733
BstDEI CTNAG 2 cut(s) 458, 831
BstDSI CCRYGG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 597
BstKTI GATC 2 cut(s) 185, 210
BstMAI GTCTC 2 cut(s) 408, 454
BstMBI GATC 2 cut(s) 182, 207
BstNSI RCATGY 1 cut(s) 748
BstV1I GCAGC 1 cut(s) 794
BstX2I RGATCY 2 cut(s) 182, 207
BstYI RGATCY 2 cut(s) 182, 207
BsuRI GGCC 1 cut(s) 269
BtgI CCRYGG 1 cut(s) 203
BtsCI GGATG 1 cut(s) 597
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 2 cut(s) 221, 398
CaiI CAGNNNCTG 2 cut(s) 185, 830
CviAII CATG 5 cut(s) 204, 283, 407, 524, 745
DdeI CTNAG 2 cut(s) 458, 831
DpnI GATC 2 cut(s) 184, 209
DpnII GATC 2 cut(s) 182, 207
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 306, 733
EarI CTCTTC 2 cut(s) 306, 733
Ecl136II GAGCTC 2 cut(s) 168, 226
Eco130I CCWWGG 2 cut(s) 203, 508
Eco24I GRGCYC 2 cut(s) 170, 228
Eco53kI GAGCTC 2 cut(s) 168, 226
Eco57I CTGAAG 1 cut(s) 207
EcoICRI GAGCTC 2 cut(s) 168, 226
EcoT14I CCWWGG 2 cut(s) 203, 508
EcoT38I GRGCYC 2 cut(s) 170, 228
ErhI CCWWGG 2 cut(s) 203, 508
FaeI CATG 5 cut(s) 207, 286, 410, 527, 748
FalI AAGNNNNNCTT 4 cut(s) 378, 410, 635, 667
FatI CATG 5 cut(s) 203, 282, 406, 523, 744
Fnu4HI GCNGC 1 cut(s) 783
FokI GGATG 1 cut(s) 604
FriOI GRGCYC 2 cut(s) 170, 228
Fsp4HI GCNGC 1 cut(s) 783
FspBI CTAG 2 cut(s) 260, 341
GluI GCNGC 1 cut(s) 783
GsuI CTGGAG 2 cut(s) 65, 137
HaeIII GGCC 1 cut(s) 269
Hin1II CATG 5 cut(s) 207, 286, 410, 527, 748
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 5 cut(s) 302, 415, 504, 638, 773
HphI GGTGA 4 cut(s) 62, 426, 731, 769
Hpy188I TCNGA 3 cut(s) 187, 459, 503
Hpy188III TCNNGA 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 447, 669
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4V TGCA 2 cut(s) 351, 782
HpyF3I CTNAG 2 cut(s) 458, 831
Hsp92II CATG 5 cut(s) 207, 286, 410, 527, 748
Kzo9I GATC 2 cut(s) 182, 207
LmnI GCTCC 1 cut(s) 451
LpnPI CCDG 8 cut(s) 29, 101, 165, 224, 609, 654, 684, 906
Lsp1109I GCAGC 1 cut(s) 794
LweI GCATC 1 cut(s) 463
MaeI CTAG 2 cut(s) 260, 341
MaeIII GTNAC 1 cut(s) 12
MalI GATC 2 cut(s) 184, 209
MboI GATC 2 cut(s) 182, 207
MboII GAAGA 7 cut(s) 102, 323, 530, 750, 858, 877, 936
MflI RGATCY 2 cut(s) 182, 207
MhlI GDGCHC 2 cut(s) 170, 228
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 8 cut(s) 49, 142, 155, 334, 377, 465, 726, 836
MluNI TGGCCA 1 cut(s) 269
MlyI GAGTC 1 cut(s) 767
MmeI TCCRAC 2 cut(s) 499, 684
MnlI CCTC 9 cut(s) 112, 384, 580, 734, 748, 826, 847, 868, 883
Mox20I TGGCCA 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 537
MscI TGGCCA 1 cut(s) 269
MseI TTAA 2 cut(s) 150, 768
MslI CAYNNNNRTG 1 cut(s) 202
Msp20I TGGCCA 1 cut(s) 269
NcoI CCATGG 1 cut(s) 203
NdeII GATC 2 cut(s) 182, 207
NlaIII CATG 5 cut(s) 207, 286, 410, 527, 748
NlaIV GGNNCC 1 cut(s) 209
NspI RCATGY 1 cut(s) 748
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 4 cut(s) 302, 415, 504, 638
PkrI GCNGC 1 cut(s) 784
PleI GAGTC 1 cut(s) 767
PpsI GAGTC 1 cut(s) 767
PshBI ATTAAT 1 cut(s) 768
Psp124BI GAGCTC 2 cut(s) 170, 228
PspN4I GGNNCC 1 cut(s) 209
PstNI CAGNNNCTG 2 cut(s) 185, 830
PsuI RGATCY 2 cut(s) 182, 207
RseI CAYNNNNRTG 1 cut(s) 202
SacI GAGCTC 2 cut(s) 170, 228
SaqAI TTAA 2 cut(s) 150, 768
SatI GCNGC 1 cut(s) 783
Sau3AI GATC 2 cut(s) 182, 207
SchI GAGTC 1 cut(s) 767
SduI GDGCHC 2 cut(s) 170, 228
SfaNI GCATC 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 202
Sse9I AATT 8 cut(s) 49, 142, 155, 334, 377, 465, 726, 836
SspMI CTAG 2 cut(s) 260, 341
SstI GAGCTC 2 cut(s) 170, 228
StyI CCWWGG 2 cut(s) 203, 508
TaaI ACNGT 1 cut(s) 402
TaqI TCGA 2 cut(s) 164, 170
TasI AATT 8 cut(s) 49, 142, 155, 334, 377, 465, 726, 836
TfiI GAWTC 4 cut(s) 302, 415, 504, 638
Tru1I TTAA 2 cut(s) 150, 768
Tru9I TTAA 2 cut(s) 150, 768
TscAI CASTG 2 cut(s) 221, 405
TseI GCWGC 1 cut(s) 782
TspDTI ATGAA 4 cut(s) 420, 531, 554, 678
TspRI CASTG 2 cut(s) 221, 405
VspI ATTAAT 1 cut(s) 768
XapI RAATTY 2 cut(s) 334, 465
XceI RCATGY 1 cut(s) 748
XcmI CCANNNNNNNNNTGG 3 cut(s) 201, 262, 649
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 2 cut(s) 260, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.