Rh1AG032100

Protein BPS1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0015679
Physical Location & Seq
Reverse (-)
5757650 .. 5768313
10664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG032100.1

Sequence Viewer

Length: 1059 bp
ATGCCTATGGTTGCTAAGTCTGACCTCTCCACTGGAAACCAAACCCACGCCTCCTATCTCCTCCGCTTCTCTCCGACGATGGTGACAAAGGGTTTTGGTTTAGAATCGATAGCAAATCGGATCTCCGTTCCAAGCAAATCCAAATTTCTCGGATCCTCTCTTCATAGTCAATCTCGTGGTGGCCTTGGATCATTTGTACATCGAACAATGAAGAAGAATCAAAGTCTCAAAAGGGTAGTTGATAATTATGGACAACGTGAATTCGGAACCTCGAGATCTGAAGTTCCATCATTTCCATGGATCCAGCAGTGTTTTGAGCTCATACCCATCATCAACAATGGTTTTGCAAAGCTAGTTGTGGCCATAGACTATCCCATGACTAAATGGGAAGCTGATTCTGTGGAAGAGTATCTCAAATACACCTTGAATTTGCTAGAGTTGTGCAACTCCATCACTTGCTCTCTTTCTCATCTTGGGAAAGAGAGGCTTTCACTGTCTCATGGTTTGAATCTTGTGGAGAGTTCATCACCTTCTTTGGCTGTGGAGCATCTGAGACAAATTCAAGTCCAACCAAAGAGTTTGAGCAAGGATTTCAGATTCCAAGGAAATGAAGAACATGGGAAAGAAAGGTTTCCTATTACCAAGAAATCAGTTATTCATCAAGCTTTGGTGGTTATGGAGGGGATGGTGTTTTGGGTATGTGGGATTTTGATGACTGTTTTGGATGGGGATTCCAAGCCATACTTGGAGATGAGAAAATCTGGTGGAAGGTTAGTAAGTTCATTGATTTCTGGGTTGGATTTGAGTGTGGGTGAAGTAATTGTGGAGAGAAGAGGCATGTTGAAAGAGGTGAAAGAGATTAATGACTCGGTTGCAGCCCTTGTTTCTGCTATTGGGATTGGGAAAAGGAGTAAAGCAGAAGCTGAGGAATTACAAAGAAGATTAGAGGTGTTTGAGAAGATGGTGGAGGGTTTGGGAAAAGAGGTGGATTGTCTTTTCAATAAGGTTTTGGCTGGAAGAAATCAACTGCTCAATGGATTTCAACACCAAAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1 DUF241

Protein Analysis

352

Amino Acids

39.26

Weight (kDa)

9.16

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 131 - 345 3.1e-08 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01730
malus_domestica MD02G1301300.v1.1 MD07G1022600.v1.1 MD07G1022700.v1.1
prunus_persica Prupe.2G023200_v2.0.a1
pyrus_communis pycom02g25310 pycom07g01710 pycom07g01720
rosa_chinensis RchiOBHm_Chr1g0318291
rosa_laevigata RLG00000030548
rosa_multiflora Rmu_ssc0000308.1_g000005
rosa_roxburghii Rroxscaffold_4G00329450
rosa_rugosa Rorug01G0019900
rosa_samantha Rh1AG032100 Rh1BG027600 Rh1DG039400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 64
AclWI GGATC 6 cut(s) 128, 147, 160, 196, 295, 308
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 4 cut(s) 143, 260, 427, 558
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 1 cut(s) 198
AgsI TTSAA 6 cut(s) 427, 508, 563, 844, 1000, 1043
AluBI AGCT 5 cut(s) 319, 352, 392, 665, 923
AluI AGCT 5 cut(s) 319, 352, 392, 665, 923
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 3 cut(s) 230, 501, 547
AlwI GGATC 6 cut(s) 128, 147, 160, 196, 295, 308
AlwNI CAGNNNCTG 1 cut(s) 923
Ama87I CYCGRG 1 cut(s) 271
AoxI GGCC 2 cut(s) 181, 360
ApeKI GCWGC 1 cut(s) 875
ApoI RAATTY 4 cut(s) 143, 260, 427, 558
AseI ATTAAT 1 cut(s) 861
Asp700I GAANNNNTTC 1 cut(s) 630
AsuHPI GGTGA 4 cut(s) 94, 519, 824, 862
AvaI CYCGRG 1 cut(s) 271
BalI TGGCCA 1 cut(s) 362
BamHI GGATCC 2 cut(s) 152, 300
BanII GRGCYC 1 cut(s) 321
BauI CACGAG 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 924
BbvI GCAGC 1 cut(s) 887
BccI CCATC 7 cut(s) 73, 295, 335, 458, 679, 719, 955
BcoDI GTCTC 3 cut(s) 230, 501, 547
BfaI CTAG 2 cut(s) 353, 434
BglII AGATCT 1 cut(s) 275
BisI GCNGC 1 cut(s) 876
BlsI GCNGC 1 cut(s) 877
BmeT110I CYCGRG 1 cut(s) 271
BmiI GGNNCC 3 cut(s) 154, 268, 302
BmsI GCATC 1 cut(s) 556
Bpu10I CCTNAGC 1 cut(s) 924
Bsa29I ATCGAT 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 184, 296, 601
Bse1I ACTGG 1 cut(s) 37
BseCI ATCGAT 1 cut(s) 107
BseDI CCNNGG 3 cut(s) 184, 296, 601
BseGI GGATG 2 cut(s) 690, 730
BseMII CTCAG 2 cut(s) 542, 915
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 887
BshFI GGCC 2 cut(s) 183, 362
BshVI ATCGAT 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 271
BsmAI GTCTC 3 cut(s) 230, 501, 547
BsnI GGCC 2 cut(s) 183, 362
BsoBI CYCGRG 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 321
Bsp1407I TGTACA 1 cut(s) 196
Bsp143I GATC 5 cut(s) 120, 152, 188, 275, 300
Bsp19I CCATGG 1 cut(s) 296
BspACI CCGC 1 cut(s) 64
BspANI GGCC 2 cut(s) 183, 362
BspCNI CTCAG 2 cut(s) 543, 916
BspDI ATCGAT 1 cut(s) 107
BspLI GGNNCC 3 cut(s) 154, 268, 302
BspPI GGATC 6 cut(s) 128, 147, 160, 196, 295, 308
BsrGI TGTACA 1 cut(s) 196
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 3 cut(s) 184, 296, 601
BssMI GATC 5 cut(s) 120, 152, 188, 275, 300
BssSI CACGAG 1 cut(s) 174
BssT1I CCWWGG 3 cut(s) 184, 296, 601
Bst2BI CACGAG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 495, 718
Bst6I CTCTTC 3 cut(s) 165, 399, 826
BstAUI TGTACA 1 cut(s) 196
BstDEI CTNAG 3 cut(s) 15, 551, 924
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 2 cut(s) 690, 730
BstKTI GATC 5 cut(s) 123, 155, 191, 278, 303
BstMAI GTCTC 3 cut(s) 230, 501, 547
BstMBI GATC 5 cut(s) 120, 152, 188, 275, 300
BstNSI RCATGY 1 cut(s) 841
BstV1I GCAGC 1 cut(s) 887
BstX2I RGATCY 4 cut(s) 120, 152, 275, 300
BstYI RGATCY 4 cut(s) 120, 152, 275, 300
Bsu15I ATCGAT 1 cut(s) 107
BsuRI GGCC 2 cut(s) 183, 362
BsuTUI ATCGAT 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 2 cut(s) 690, 730
BtsI GCAGTG 1 cut(s) 314
BtsIMutI CAGTG 3 cut(s) 30, 314, 491
CaiI CAGNNNCTG 1 cut(s) 923
ClaI ATCGAT 1 cut(s) 107
Csp6I GTAC 1 cut(s) 197
CviAII CATG 5 cut(s) 297, 376, 500, 617, 838
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 3 cut(s) 15, 551, 924
DpnI GATC 5 cut(s) 122, 154, 190, 277, 302
DpnII GATC 5 cut(s) 120, 152, 188, 275, 300
EaeI YGGCCR 1 cut(s) 360
Eam1104I CTCTTC 3 cut(s) 165, 399, 826
EarI CTCTTC 3 cut(s) 165, 399, 826
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 3 cut(s) 184, 296, 601
Eco24I GRGCYC 1 cut(s) 321
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 260
EcoT14I CCWWGG 3 cut(s) 184, 296, 601
EcoT38I GRGCYC 1 cut(s) 321
ErhI CCWWGG 3 cut(s) 184, 296, 601
FaeI CATG 5 cut(s) 300, 379, 503, 620, 841
FalI AAGNNNNNCTT 4 cut(s) 471, 503, 728, 760
FatI CATG 5 cut(s) 296, 375, 499, 616, 837
Fnu4HI GCNGC 1 cut(s) 876
FokI GGATG 2 cut(s) 697, 737
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 876
FspBI CTAG 2 cut(s) 353, 434
GluI GCNGC 1 cut(s) 876
HaeIII GGCC 2 cut(s) 183, 362
Hin1II CATG 5 cut(s) 300, 379, 503, 620, 841
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 7 cut(s) 104, 217, 395, 508, 597, 731, 866
HphI GGTGA 4 cut(s) 94, 519, 824, 862
Hpy188I TCNGA 8 cut(s) 22, 75, 120, 152, 266, 280, 552, 596
Hpy188III TCNNGA 1 cut(s) 273
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 2 cut(s) 540, 762
HpyCH4III ACNGT 2 cut(s) 495, 718
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 3 cut(s) 347, 444, 875
HpyF3I CTNAG 3 cut(s) 15, 551, 924
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 5 cut(s) 300, 379, 503, 620, 841
Kzo9I GATC 5 cut(s) 120, 152, 188, 275, 300
LmnI GCTCC 1 cut(s) 544
LpnPI CCDG 5 cut(s) 18, 317, 747, 777, 999
Lsp1109I GCAGC 1 cut(s) 887
LweI GCATC 1 cut(s) 556
MaeI CTAG 2 cut(s) 353, 434
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 1 cut(s) 82
MalI GATC 5 cut(s) 122, 154, 190, 277, 302
MboI GATC 5 cut(s) 120, 152, 188, 275, 300
MboII GAAGA 9 cut(s) 152, 223, 226, 416, 623, 843, 951, 970, 1029
MflI RGATCY 4 cut(s) 120, 152, 275, 300
MhlI GDGCHC 1 cut(s) 321
MlsI TGGCCA 1 cut(s) 362
MluCI AATT 7 cut(s) 143, 244, 260, 427, 558, 819, 929
MluNI TGGCCA 1 cut(s) 362
MlyI GAGTC 1 cut(s) 860
MmeI TCCRAC 3 cut(s) 98, 592, 777
Mox20I TGGCCA 1 cut(s) 362
MroXI GAANNNNTTC 1 cut(s) 630
MscI TGGCCA 1 cut(s) 362
MseI TTAA 1 cut(s) 861
MslI CAYNNNNRTG 1 cut(s) 295
Msp20I TGGCCA 1 cut(s) 362
NcoI CCATGG 1 cut(s) 296
NdeII GATC 5 cut(s) 120, 152, 188, 275, 300
NlaIII CATG 5 cut(s) 300, 379, 503, 620, 841
NlaIV GGNNCC 3 cut(s) 154, 268, 302
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 841
PaeR7I CTCGAG 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 6 cut(s) 104, 217, 395, 508, 597, 731
PkrI GCNGC 1 cut(s) 877
PleI GAGTC 1 cut(s) 860
PpsI GAGTC 1 cut(s) 860
PshBI ATTAAT 1 cut(s) 861
Psp124BI GAGCTC 1 cut(s) 321
PspN4I GGNNCC 3 cut(s) 154, 268, 302
PstNI CAGNNNCTG 1 cut(s) 923
PsuI RGATCY 4 cut(s) 120, 152, 275, 300
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 295
SacI GAGCTC 1 cut(s) 321
SaqAI TTAA 1 cut(s) 861
SatI GCNGC 1 cut(s) 876
Sau3AI GATC 5 cut(s) 120, 152, 188, 275, 300
SchI GAGTC 1 cut(s) 860
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 1 cut(s) 556
Sfr274I CTCGAG 1 cut(s) 271
SlaI CTCGAG 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 7 cut(s) 143, 244, 260, 427, 558, 819, 929
SsiI CCGC 1 cut(s) 64
SspMI CTAG 2 cut(s) 353, 434
SstI GAGCTC 1 cut(s) 321
StyI CCWWGG 3 cut(s) 184, 296, 601
TaaI ACNGT 2 cut(s) 495, 718
TaiI ACGT 1 cut(s) 259
TaqI TCGA 3 cut(s) 107, 202, 272
TasI AATT 7 cut(s) 143, 244, 260, 427, 558, 819, 929
TatI WGTACW 1 cut(s) 196
TfiI GAWTC 6 cut(s) 104, 217, 395, 508, 597, 731
Tru1I TTAA 1 cut(s) 861
Tru9I TTAA 1 cut(s) 861
TscAI CASTG 3 cut(s) 37, 314, 498
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 875
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 6 cut(s) 152, 224, 513, 624, 647, 771
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 3 cut(s) 37, 314, 498
VspI ATTAAT 1 cut(s) 861
XapI RAATTY 4 cut(s) 143, 260, 427, 558
XceI RCATGY 1 cut(s) 841
XcmI CCANNNNNNNNNTGG 2 cut(s) 294, 742
XhoI CTCGAG 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 2 cut(s) 353, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.