Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014030

Physical Location & Seq

Genomic Coordinates Forward (+)

4596074 .. 4596930

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTTCACAGCTGACCCTCCCATCTCTGCCACCGGCGTCGGCGTCGGTTACGGCATCGCCATTGCCGTCAGCATCCTCGTACTCATCTCCGCCATCATGCTCGCCTCTTACGCATGCGTCAGAGTCAAATCCCATGGCGGTTATTACAGCGACGACTACGACGAGCAGTACTCCAACTCCCACCGCCGCTCCCCCACCACCACCAGCAACTATTCCGCCGAGCCCGCGACGGTCGTGCTGGGCCTTGATGGTCCCACCATAGATTCATACCCGAAGATAGTTCTCGGTGAAAGCAAGCGGCTGCCGAAGCCGAACGACGGCGTTTGCTCCATCTGCTTGTCGGAGTACCAAGCCAAGGATCCCGTACGGTGCATCCCGGAATGCCATCACTGCTTCCACGTTGATTGCGTAGACGAATGGCTGCGCATGAGTGCCACGTGTCCCGTCTGTAGAAACTCTCCGGCTCCTTCGCCGGTGCCAAGTCCTCTGTCCAATTTGGTACCTATGGCGTTCCATTCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

175

Amino Acids

18.72

Weight (kDa)

5.8

Isoelectric Point (pI)

57.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	107 - 151	2.1e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	109 - 151	6.2e-13	Ring finger domain
zf-RING_11	PF17123	109 - 137	4.8e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07040
fragaria_vesca	FvH4_7g04010
malus_domestica	MD00G1152800.v1.1 MD03G1294900.v1.1
prunus_persica	Prupe.2G044600_v2.0.a1
pyrus_communis	pycom02g23630
rosa_chinensis	RchiOBHm_Chr1g0327791
rosa_laevigata	RLG00000029964
rosa_multiflora	Rmu_sc0005527.1_g000012
rosa_rugosa	Rorug01G0071000
rosa_samantha	Rh1AG087100 Rh1BG070300 Rh1CG085200 Rh1DG091600 Rh6BG243000 Rh6CG245000
rosa_wichuraiana	Rw1G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	425
Acc65I	GGTACC	1 cut(s)	499
AccB1I	GGYRCC	2 cut(s)	475, 499
AccBSI	CCGCTC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	411
AccII	CGCG	1 cut(s)	227
AciI	CCGC	7 cut(s)	90, 138, 184, 187, 216, 225, 298
AclWI	GGATC	2 cut(s)	353, 366
AcvI	CACGTG	1 cut(s)	438
AcyI	GRCGYC	2 cut(s)	36, 42
AfaI	GTAC	5 cut(s)	81, 170, 347, 366, 501
AfiI	CCNNNNNNNGG	2 cut(s)	317, 355
AflIII	ACRYGT	1 cut(s)	437
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
AlwI	GGATC	2 cut(s)	353, 366
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	301, 421
Asp718I	GGTACC	1 cut(s)	499
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	2 cut(s)	241, 251
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	358
BanI	GGYRCC	2 cut(s)	475, 499
BanII	GRGCYC	1 cut(s)	225
BbrPI	CACGTG	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	288, 408
BccI	CCATC	5 cut(s)	29, 101, 242, 338, 393
BceAI	ACGGC	3 cut(s)	50, 67, 334
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BcnI	CCSGG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	448
BisI	GCNGC	4 cut(s)	187, 299, 302, 422
BlsI	GCNGC	4 cut(s)	188, 300, 303, 423
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	241, 251
BmiI	GGNNCC	5 cut(s)	253, 360, 465, 477, 501
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	3 cut(s)	63, 81, 381
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpuMI	CCSGG	1 cut(s)	377
BsaAI	YACGTR	2 cut(s)	438, 522
BsaHI	GRCGYC	2 cut(s)	36, 42
BsaJI	CCNNGG	2 cut(s)	133, 354
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 173, 191, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 355
Bse118I	RCCGGY	2 cut(s)	32, 472
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	133, 354
BseGI	GGATG	2 cut(s)	72, 372
BseLI	CCNNNNNNNGG	2 cut(s)	317, 355
BseMI	GCAATG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	288, 408
BseYI	CCCAGC	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	2 cut(s)	475, 499
BsiEI	CGRYCG	1 cut(s)	234
BsiSI	CCGG	4 cut(s)	33, 377, 461, 473
BsiWI	CGTACG	1 cut(s)	364
BslFI	GGGAC	2 cut(s)	237, 426
BslI	CCNNNNNNNGG	2 cut(s)	317, 355
BsmFI	GGGAC	2 cut(s)	237, 426
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	358
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	7 cut(s)	90, 138, 184, 187, 216, 225, 298
BspANI	GGCC	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	5 cut(s)	253, 360, 465, 477, 501
BspPI	GGATC	2 cut(s)	353, 366
BspT107I	GGYRCC	2 cut(s)	475, 499
BsrBI	CCGCTC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	2 cut(s)	32, 472
BssAI	RCCGGY	2 cut(s)	32, 472
BssECI	CCNNGG	2 cut(s)	133, 354
BssMI	GATC	1 cut(s)	358
BssNI	GRCGYC	2 cut(s)	36, 42
BssT1I	CCWWGG	2 cut(s)	133, 354
Bst4CI	ACNGT	2 cut(s)	232, 369
BstACI	GRCGYC	2 cut(s)	36, 42
BstBAI	YACGTR	2 cut(s)	438, 522
BstC8I	GCNNGC	4 cut(s)	102, 115, 225, 296
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	72, 372
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	358
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 224, 307, 333, 390
BstNSI	RCATGY	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	448
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	288, 408
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	133
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	72, 372
BtsI	GCAGTG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	388
Cac8I	GCNNGC	4 cut(s)	102, 115, 225, 296
CfoI	GCGC	1 cut(s)	426
Cfr10I	RCCGGY	2 cut(s)	32, 472
Cfr13I	GGNCC	2 cut(s)	241, 251
CseI	GACGC	3 cut(s)	25, 31, 106
Csp6I	GTAC	5 cut(s)	80, 169, 346, 365, 500
CspCI	CAANNNNNGTGG	2 cut(s)	386, 421
CviAII	CATG	4 cut(s)	97, 114, 134, 427
CviJI	RGCY	8 cut(s)	11, 223, 243, 301, 310, 353, 421, 464
CviKI_1	RGCY	8 cut(s)	11, 223, 243, 301, 310, 353, 421, 464
CviQI	GTAC	5 cut(s)	80, 169, 346, 365, 500
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
EciI	GGCGGA	2 cut(s)	79, 205
Eco130I	CCWWGG	2 cut(s)	133, 354
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	251
Eco72I	CACGTG	1 cut(s)	438
EcoT14I	CCWWGG	2 cut(s)	133, 354
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	2 cut(s)	133, 354
FaeI	CATG	4 cut(s)	100, 117, 137, 430
FaiI	YATR	7 cut(s)	98, 115, 135, 260, 268, 428, 506
FaqI	GGGAC	2 cut(s)	237, 426
FatI	CATG	4 cut(s)	96, 113, 133, 426
FauI	CCCGC	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	4 cut(s)	187, 299, 302, 422
FokI	GGATG	2 cut(s)	59, 359
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	4 cut(s)	187, 299, 302, 422
FspI	TGCGCA	1 cut(s)	425
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	4 cut(s)	187, 299, 302, 422
GsaI	CCCAGC	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	4 cut(s)	33, 377, 461, 473
HgaI	GACGC	3 cut(s)	25, 31, 106
HhaI	GCGC	1 cut(s)	426
Hin1I	GRCGYC	2 cut(s)	36, 42
Hin1II	CATG	4 cut(s)	100, 117, 137, 430
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	123, 263
HpaII	CCGG	4 cut(s)	33, 377, 461, 473
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	6, 412
Hpy188I	TCNGA	2 cut(s)	122, 343
Hpy8I	GTNNAC	2 cut(s)	6, 412
Hpy99I	CGWCG	6 cut(s)	41, 47, 155, 164, 232, 320
HpyAV	CCTTC	1 cut(s)	477
HpyCH4III	ACNGT	2 cut(s)	232, 369
HpyCH4IV	ACGT	3 cut(s)	399, 437, 521
HpyCH4V	TGCA	1 cut(s)	372
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 224, 307, 333, 390
HpySE526I	ACGT	3 cut(s)	399, 437, 521
Hsp92I	GRCGYC	2 cut(s)	36, 42
Hsp92II	CATG	4 cut(s)	100, 117, 137, 430
HspAI	GCGC	1 cut(s)	424
KpnI	GGTACC	1 cut(s)	503
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	3 cut(s)	194, 332, 469
LpnPI	CCDG	6 cut(s)	46, 217, 224, 390, 474, 486
Lsp1109I	GCAGC	2 cut(s)	288, 408
LweI	GCATC	3 cut(s)	63, 81, 381
MaeII	ACGT	3 cut(s)	399, 437, 521
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	1 cut(s)	360
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	1 cut(s)	358
MboII	GAAGA	1 cut(s)	286
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	1 cut(s)	493
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	2 cut(s)	198, 321
MnlI	CCTC	4 cut(s)	27, 86, 115, 495
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	4 cut(s)	33, 377, 461, 473
MspR9I	CCNGG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	386
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	5 cut(s)	110, 224, 307, 333, 390
NciI	CCSGG	1 cut(s)	377
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	4 cut(s)	100, 117, 137, 430
NlaIV	GGNNCC	5 cut(s)	253, 360, 465, 477, 501
NmeAIII	GCCGAG	1 cut(s)	244
NsbI	TGCGCA	1 cut(s)	425
NspI	RCATGY	1 cut(s)	117
PaeI	GCATGC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	3 cut(s)	63, 159, 405
PctI	GAATGC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	263
Pfl23II	CGTACG	1 cut(s)	364
PfoI	TCCNGGA	1 cut(s)	375
PkrI	GCNGC	4 cut(s)	188, 300, 303, 423
PleI	GAGTC	1 cut(s)	131
PmaCI	CACGTG	1 cut(s)	438
PmlI	CACGTG	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	131
Ppu21I	YACGTR	2 cut(s)	438, 522
PspCI	CACGTG	1 cut(s)	438
PspFI	CCCAGC	1 cut(s)	238
PspLI	CGTACG	1 cut(s)	364
PspN4I	GGNNCC	5 cut(s)	253, 360, 465, 477, 501
PspPI	GGNCC	2 cut(s)	241, 251
PsuI	RGATCY	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	5 cut(s)	81, 170, 347, 366, 501
RsaNI	GTAC	5 cut(s)	80, 169, 346, 365, 500
SatI	GCNGC	4 cut(s)	187, 299, 302, 422
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	2 cut(s)	241, 251
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	5 cut(s)	13, 402, 440, 505, 524
SfaNI	GCATC	3 cut(s)	63, 81, 381
SfcI	CTRYAG	1 cut(s)	448
SgrAI	CRCCGGYG	2 cut(s)	32, 472
SinI	GGWCC	1 cut(s)	251
SphI	GCATGC	1 cut(s)	117
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	7 cut(s)	90, 138, 184, 187, 216, 225, 298
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	2 cut(s)	133, 354
TaaI	ACNGT	2 cut(s)	232, 369
TaiI	ACGT	3 cut(s)	402, 440, 524
TasI	AATT	1 cut(s)	493
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	2 cut(s)	189, 301
TfiI	GAWTC	1 cut(s)	263
TscAI	CASTG	1 cut(s)	395
TseI	GCWGC	2 cut(s)	301, 421
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	251
XceI	RCATGY	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	411
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.