Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0014030

Physical Location & Seq

Genomic Coordinates Forward (+)

33437261 .. 33438262

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1152800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTTCGCGGCGGAGCCACCTGCATCAGCCCCTGGTGTCGGCGTCGGCTACGGCATAGCCATTGCCGTCAGCATCCTCGTCCTCATCTCCGCCATCATGCTCGCTTCTTACGCCTGCGTTAAAGTTAAAGGCTCAACCGGCAGAGGTCACACAGGCGATGCCCCTTCTAACTACTACGAAGACCGCAACCGCCGCTTCTCCACCATAAGCAACTCAACGGAGCCTGTGGTGGTCCTCATGGGCCTCGACGATCCCACCATTGACTCGTACCCAAAGTTGGTACTCGGCGAAAGCCGGCGGATCCCTCAGCGCAACGACACCGTGTGCTCCATTTGCTTGTCCGAGTACAAGCCCAAGGATCAAGTACGGTGCATTCCGGACTGCCACCATTGTTTCCATGCAGAATGCGTCGATGAGTGGCTTCGCATGAGCGCCACGTGTCCGGTTTGTAGAAATTCTCCGGCTCCGTCCGCCGGTCCAAGCCCTCTGTCCGATTTGGTGCCACTGGCCTTCAATGCCAGGCGGTTGGTCTGCTCTGCCCGCGGTTGTATACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

186

Amino Acids

19.89

Weight (kDa)

7.52

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	108 - 151	6.2e-13	Ring finger domain
zf-RING_11	PF17123	109 - 137	1.5e-07	RING-like zinc finger
zf-rbx1	PF12678	112 - 151	9.5e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07040
fragaria_vesca	FvH4_7g04010
malus_domestica	MD00G1152800.v1.1 MD03G1294900.v1.1
prunus_persica	Prupe.2G044600_v2.0.a1
pyrus_communis	pycom02g23630
rosa_chinensis	RchiOBHm_Chr1g0327791
rosa_laevigata	RLG00000029964
rosa_multiflora	Rmu_sc0005527.1_g000012
rosa_rugosa	Rorug01G0071000
rosa_samantha	Rh1AG087100 Rh1BG070300 Rh1CG085200 Rh1DG091600 Rh6BG243000 Rh6CG245000
rosa_wichuraiana	Rw1G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	28
Acc36I	ACCTGC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	550
AccII	CGCG	2 cut(s)	8, 543
AccIII	TCCGGA	1 cut(s)	376
AclWI	GGATC	4 cut(s)	245, 295, 308, 366
AcsI	RAATTY	1 cut(s)	454
AcvI	CACGTG	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	42
AdeI	CACNNNGTG	1 cut(s)	324
AfaI	GTAC	4 cut(s)	269, 282, 347, 366
AfiI	CCNNNNNNNGG	3 cut(s)	38, 277, 473
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	514
AjnI	CCWGG	2 cut(s)	31, 518
Alw21I	GWGCWC	1 cut(s)	329
AlwI	GGATC	4 cut(s)	245, 295, 308, 366
AlwNI	CAGNNNCTG	1 cut(s)	32
Aor13HI	TCCGGA	1 cut(s)	376
AoxI	GGCC	2 cut(s)	241, 507
ApoI	RAATTY	1 cut(s)	454
AspLEI	GCGC	2 cut(s)	312, 434
AspS9I	GGNCC	3 cut(s)	232, 241, 476
AvaII	GGWCC	2 cut(s)	232, 476
BamHI	GGATCC	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	499
BbrPI	CACGTG	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	329
BbvCI	CCTCAGC	1 cut(s)	306
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	2 cut(s)	50, 67
BciT130I	CCWGG	2 cut(s)	33, 520
BfoI	RGCGCY	1 cut(s)	435
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	2 cut(s)	9, 193
BlsI	GCNGC	2 cut(s)	10, 194
Bme1390I	CCNGG	2 cut(s)	33, 520
Bme18I	GGWCC	2 cut(s)	232, 476
BmgT120I	GGNCC	3 cut(s)	232, 241, 476
BmiI	GGNNCC	5 cut(s)	15, 222, 302, 465, 501
BmrFI	CCNGG	2 cut(s)	33, 520
BmsI	GCATC	3 cut(s)	32, 81, 148
BpiI	GAAGAC	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	31, 354, 541
BsaWI	WCCGGW	2 cut(s)	376, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 277, 473
Bse118I	RCCGGY	3 cut(s)	137, 294, 473
Bse1I	ACTGG	1 cut(s)	510
Bse3DI	GCAATG	1 cut(s)	60
BseAI	TCCGGA	1 cut(s)	376
BseBI	CCWGG	2 cut(s)	33, 520
BseDI	CCNNGG	3 cut(s)	31, 354, 541
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	3 cut(s)	38, 277, 473
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	510
Bsh1236I	CGCG	2 cut(s)	8, 543
BshFI	GGCC	2 cut(s)	243, 509
BshNI	GGYRCC	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	6 cut(s)	138, 295, 377, 443, 461, 474
BslI	CCNNNNNNNGG	3 cut(s)	38, 277, 473
BsmI	GAATGC	2 cut(s)	372, 410
BsnI	GGCC	2 cut(s)	243, 509
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp13I	TCCGGA	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	250, 300, 358
BspANI	GGCC	2 cut(s)	243, 509
BspCNI	CTCAG	1 cut(s)	319
BspEI	TCCGGA	1 cut(s)	376
BspFNI	CGCG	2 cut(s)	8, 543
BspLI	GGNNCC	5 cut(s)	15, 222, 302, 465, 501
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	4 cut(s)	245, 295, 308, 366
BspT107I	GGYRCC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	3 cut(s)	137, 294, 473
BsrI	ACTGG	1 cut(s)	510
BssAI	RCCGGY	3 cut(s)	137, 294, 473
BssECI	CCNNGG	3 cut(s)	31, 354, 541
BssMI	GATC	3 cut(s)	250, 300, 358
BssNAI	GTATAC	1 cut(s)	551
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	354
Bst1107I	GTATAC	1 cut(s)	551
Bst2UI	CCWGG	2 cut(s)	33, 520
Bst4CI	ACNGT	2 cut(s)	322, 369
BstACI	GRCGYC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	438
BstC8I	GCNNGC	4 cut(s)	102, 115, 296, 541
BstDEI	CTNAG	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	2 cut(s)	8, 543
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	2 cut(s)	312, 434
BstKTI	GATC	3 cut(s)	253, 303, 361
BstMBI	GATC	3 cut(s)	250, 300, 358
BstMWI	GCNNNNNNNGC	7 cut(s)	110, 138, 192, 333, 470, 515, 540
BstNI	CCWGG	2 cut(s)	33, 520
BstSCI	CCNGG	2 cut(s)	31, 518
BstUI	CGCG	2 cut(s)	8, 543
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	300
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	300
BstZ17I	GTATAC	1 cut(s)	551
BsuRI	GGCC	2 cut(s)	243, 509
BtgI	CCRYGG	1 cut(s)	541
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	503
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	4 cut(s)	102, 115, 296, 541
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	2 cut(s)	312, 434
Cfr10I	RCCGGY	3 cut(s)	137, 294, 473
Cfr13I	GGNCC	3 cut(s)	232, 241, 476
Cfr42I	CCGCGG	1 cut(s)	544
CseI	GACGC	2 cut(s)	31, 397
Csp6I	GTAC	4 cut(s)	268, 281, 346, 365
CviAII	CATG	4 cut(s)	97, 238, 398, 427
CviQI	GTAC	4 cut(s)	268, 281, 346, 365
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	3 cut(s)	252, 302, 360
DpnII	GATC	3 cut(s)	250, 300, 358
DraIII	CACNNNGTG	1 cut(s)	324
EciI	GGCGGA	4 cut(s)	26, 79, 313, 460
Eco130I	CCWWGG	1 cut(s)	354
Eco47I	GGWCC	2 cut(s)	232, 476
Eco72I	CACGTG	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	31, 518
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	4 cut(s)	100, 241, 401, 430
FaiI	YATR	7 cut(s)	56, 98, 206, 239, 399, 428, 551
FatI	CATG	4 cut(s)	96, 237, 397, 426
FauI	CCCGC	1 cut(s)	548
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	2 cut(s)	9, 193
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	9, 193
GlaI	GCGC	2 cut(s)	311, 433
GluI	GCNGC	2 cut(s)	9, 193
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	243, 509
HapII	CCGG	6 cut(s)	138, 295, 377, 443, 461, 474
HgaI	GACGC	2 cut(s)	31, 397
HhaI	GCGC	2 cut(s)	312, 434
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	4 cut(s)	100, 241, 401, 430
Hin6I	GCGC	2 cut(s)	310, 432
HinP1I	GCGC	2 cut(s)	310, 432
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	6 cut(s)	138, 295, 377, 443, 461, 474
Hpy166II	GTNNAC	1 cut(s)	551
Hpy188I	TCNGA	2 cut(s)	343, 493
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	1 cut(s)	551
Hpy99I	CGWCG	3 cut(s)	47, 251, 413
HpyAV	CCTTC	2 cut(s)	174, 520
HpyCH4III	ACNGT	2 cut(s)	322, 369
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	3 cut(s)	23, 372, 401
HpyF10VI	GCNNNNNNNGC	7 cut(s)	110, 138, 192, 333, 470, 515, 540
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	1 cut(s)	437
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	4 cut(s)	100, 241, 401, 430
HspAI	GCGC	2 cut(s)	310, 432
Kpn2I	TCCGGA	1 cut(s)	376
KroI	GCCGGC	1 cut(s)	294
KroNI	GCCGGC	1 cut(s)	296
KspI	CCGCGG	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	250, 300, 358
LmnI	GCTCC	4 cut(s)	13, 220, 332, 469
LweI	GCATC	3 cut(s)	32, 81, 148
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	3 cut(s)	252, 302, 360
MboI	GATC	3 cut(s)	250, 300, 358
MboII	GAAGA	1 cut(s)	191
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	7 cut(s)	86, 92, 137, 245, 254, 315, 495
MroI	TCCGGA	1 cut(s)	376
MroNI	GCCGGC	1 cut(s)	294
MseI	TTAA	2 cut(s)	120, 126
MspA1I	CMGCKG	1 cut(s)	543
MspI	CCGG	6 cut(s)	138, 295, 377, 443, 461, 474
MspR9I	CCNGG	2 cut(s)	33, 520
Mva1269I	GAATGC	2 cut(s)	372, 410
MvaI	CCWGG	2 cut(s)	33, 520
MvnI	CGCG	2 cut(s)	8, 543
MwoI	GCNNNNNNNGC	7 cut(s)	110, 138, 192, 333, 470, 515, 540
NaeI	GCCGGC	1 cut(s)	296
NdeII	GATC	3 cut(s)	250, 300, 358
NgoMIV	GCCGGC	1 cut(s)	294
NlaIII	CATG	4 cut(s)	100, 241, 401, 430
NlaIV	GGNNCC	5 cut(s)	15, 222, 302, 465, 501
NmeAIII	GCCGAG	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	146
PaqCI	CACCTGC	1 cut(s)	28
PctI	GAATGC	2 cut(s)	372, 410
PdiI	GCCGGC	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	10, 194
PleI	GAGTC	1 cut(s)	257
PmaCI	CACGTG	1 cut(s)	438
PmlI	CACGTG	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	31, 518
PspCI	CACGTG	1 cut(s)	438
PspGI	CCWGG	2 cut(s)	31, 518
PspN4I	GGNNCC	5 cut(s)	15, 222, 302, 465, 501
PspPI	GGNCC	3 cut(s)	232, 241, 476
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	4 cut(s)	269, 282, 347, 366
RsaNI	GTAC	4 cut(s)	268, 281, 346, 365
SacII	CCGCGG	1 cut(s)	544
SaqAI	TTAA	2 cut(s)	120, 126
SatI	GCNGC	2 cut(s)	9, 193
Sau3AI	GATC	3 cut(s)	250, 300, 358
Sau96I	GGNCC	3 cut(s)	232, 241, 476
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	33, 520
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	3 cut(s)	22, 148, 440
SfaNI	GCATC	3 cut(s)	32, 81, 148
Sfr303I	CCGCGG	1 cut(s)	544
SgrBI	CCGCGG	1 cut(s)	544
SinI	GGWCC	2 cut(s)	232, 476
Sse9I	AATT	1 cut(s)	454
StyD4I	CCNGG	2 cut(s)	31, 518
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	322, 369
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	2 cut(s)	246, 411
TasI	AATT	1 cut(s)	454
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	2 cut(s)	11, 195
Tru1I	TTAA	2 cut(s)	120, 126
Tru9I	TTAA	2 cut(s)	120, 126
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	146
TspGWI	ACGGA	2 cut(s)	233, 456
TspRI	CASTG	1 cut(s)	510
VpaK11BI	GGWCC	2 cut(s)	232, 476
XapI	RAATTY	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.