Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0014030

Physical Location & Seq

Genomic Coordinates Reverse (-)

37089155 .. 37089685

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1294900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCTCGCTTGTTACGTCTGCGTTAAAGTCAAAGGCTCAACCGGTAGAGGCCACACATGTGATGCCACTTCTAACTACTATGAAGACCGCAACCACCGCTTCTCCACTATAAGCAACTCAACGGAGCCTGTGGTGGTCCTCATGGGCCTCGACGACCCTATCATTGACTCGTACCTAAAGTTGGTACTCGACGAAAGCCAGCGGCTCCCTCAGCGCAACGACGCCGTGTGCTCCATTTGCTTGTCCGATTACAAGCCTAAGGATCAAGTACGGTGCATTCCGGACTGCCACCATTGTTTCCATGCAGAATGCGTCGATGAGTGGCTTCGCATGAGCACCACGTGCCTGGTTTGTAGAAATTCTCCGGCTCCGTCGGCTGGTCCAAGCCCTCTGTCCGATTTGGTGCCATTGGCCTTCAATGCCAGGGTATTCATCTTCAAATCACCGTGTGATCTGGATTCAAATTTTCTCATGTACGCAGTAGGCGTAGTGCGCACCAACAACCTGCAATTGTCGACCACCAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

177

Amino Acids

19.63

Weight (kDa)

5.9

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	77 - 119	1.7e-11	Ring finger domain
zf-RING_11	PF17123	77 - 105	1.6e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07040
fragaria_vesca	FvH4_7g04010
malus_domestica	MD00G1152800.v1.1 MD03G1294900.v1.1
prunus_persica	Prupe.2G044600_v2.0.a1
pyrus_communis	pycom02g23630
rosa_chinensis	RchiOBHm_Chr1g0327791
rosa_laevigata	RLG00000029964
rosa_multiflora	Rmu_sc0005527.1_g000012
rosa_rugosa	Rorug01G0071000
rosa_samantha	Rh1AG087100 Rh1BG070300 Rh1CG085200 Rh1DG091600 Rh6BG243000 Rh6CG245000
rosa_wichuraiana	Rw1G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	494
Acc36I	ACCTGC	1 cut(s)	513
AccB1I	GGYRCC	1 cut(s)	403
AccI	GTMKAC	1 cut(s)	515
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	3 cut(s)	88, 97, 202
AclWI	GGATC	1 cut(s)	270
AcsI	RAATTY	2 cut(s)	358, 463
AcvI	CACGTG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	222
AdeI	CACNNNGTG	2 cut(s)	342, 449
AfaI	GTAC	4 cut(s)	173, 186, 270, 476
AfiI	CCNNNNNNNGG	2 cut(s)	181, 377
AflIII	ACRYGT	1 cut(s)	56
AgeI	ACCGGT	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	418, 439, 462
AjnI	CCWGG	2 cut(s)	345, 422
AleI	CACNNNNGTG	1 cut(s)	57
Alw21I	GWGCWC	2 cut(s)	233, 338
AlwI	GGATC	1 cut(s)	270
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	3 cut(s)	49, 145, 411
ApoI	RAATTY	2 cut(s)	358, 463
AsiGI	ACCGGT	1 cut(s)	41
AspLEI	GCGC	2 cut(s)	216, 495
AspS9I	GGNCC	3 cut(s)	136, 145, 380
AsuHPI	GGTGA	1 cut(s)	435
AvaII	GGWCC	2 cut(s)	136, 380
AxyI	CCTNAGG	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	403
BbrPI	CACGTG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	2 cut(s)	233, 338
BbvCI	CCTCAGC	1 cut(s)	210
BceAI	ACGGC	1 cut(s)	209
BciT130I	CCWGG	2 cut(s)	347, 424
BfuAI	ACCTGC	1 cut(s)	513
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	347, 424
Bme18I	GGWCC	2 cut(s)	136, 380
BmgT120I	GGNCC	3 cut(s)	136, 145, 380
BmiI	GGNNCC	4 cut(s)	126, 206, 369, 405
BmrFI	CCNGG	2 cut(s)	347, 424
BmsI	GCATC	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	210
BsaAI	YACGTR	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	423
BsaWI	WCCGGW	2 cut(s)	41, 280
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 377
Bse118I	RCCGGY	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	258
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	347, 424
BseDI	CCNNGG	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	181, 377
BseMII	CTCAG	1 cut(s)	224
BshFI	GGCC	3 cut(s)	51, 147, 413
BshNI	GGYRCC	1 cut(s)	403
BshTI	ACCGGT	1 cut(s)	41
BsiHKAI	GWGCWC	2 cut(s)	233, 338
BsiSI	CCGG	3 cut(s)	42, 281, 365
BslI	CCNNNNNNNGG	2 cut(s)	181, 377
BsmI	GAATGC	2 cut(s)	276, 314
BsnI	GGCC	3 cut(s)	51, 147, 413
Bsp1286I	GDGCHC	2 cut(s)	233, 338
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	2 cut(s)	262, 451
BspACI	CCGC	3 cut(s)	88, 97, 202
BspANI	GGCC	3 cut(s)	51, 147, 413
BspCNI	CTCAG	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	280
BspLI	GGNNCC	4 cut(s)	126, 206, 369, 405
BspMI	ACCTGC	1 cut(s)	513
BspPI	GGATC	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	2 cut(s)	262, 451
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	347, 424
Bst4CI	ACNGT	2 cut(s)	273, 447
BstACI	GRCGYC	1 cut(s)	222
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstBAI	YACGTR	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	6, 200
BstDEI	CTNAG	2 cut(s)	210, 258
BstHHI	GCGC	2 cut(s)	216, 495
BstKTI	GATC	2 cut(s)	265, 454
BstMBI	GATC	2 cut(s)	262, 451
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 211, 237, 342, 374, 419, 492
BstNI	CCWGG	2 cut(s)	347, 424
BstNSI	RCATGY	1 cut(s)	60
BstSCI	CCNGG	2 cut(s)	345, 422
BstV2I	GAAGAC	1 cut(s)	90
BstXI	CCANNNNNNTGG	1 cut(s)	346
Bsu36I	CCTNAGG	1 cut(s)	258
BsuRI	GGCC	3 cut(s)	51, 147, 413
BveI	ACCTGC	1 cut(s)	513
Cac8I	GCNNGC	2 cut(s)	6, 200
CfoI	GCGC	2 cut(s)	216, 495
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	3 cut(s)	136, 145, 380
CseI	GACGC	2 cut(s)	230, 301
Csp6I	GTAC	4 cut(s)	172, 185, 269, 475
CspAI	ACCGGT	1 cut(s)	41
CviAII	CATG	5 cut(s)	57, 142, 302, 331, 472
CviQI	GTAC	4 cut(s)	172, 185, 269, 475
DdeI	CTNAG	2 cut(s)	210, 258
DpnI	GATC	2 cut(s)	264, 453
DpnII	GATC	2 cut(s)	262, 451
DraIII	CACNNNGTG	2 cut(s)	342, 449
Eco47I	GGWCC	2 cut(s)	136, 380
Eco72I	CACGTG	1 cut(s)	342
Eco81I	CCTNAGG	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	345, 422
FaeI	CATG	5 cut(s)	60, 145, 305, 334, 475
FaiI	YATR	7 cut(s)	58, 81, 110, 143, 303, 332, 473
FatI	CATG	5 cut(s)	56, 141, 301, 330, 471
FblI	GTMKAC	1 cut(s)	515
Fnu4HI	GCNGC	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	203
FspAI	RTGCGCAY	1 cut(s)	494
FspI	TGCGCA	1 cut(s)	494
GlaI	GCGC	2 cut(s)	215, 494
GluI	GCNGC	1 cut(s)	203
HaeIII	GGCC	3 cut(s)	51, 147, 413
HapII	CCGG	3 cut(s)	42, 281, 365
HgaI	GACGC	2 cut(s)	230, 301
HhaI	GCGC	2 cut(s)	216, 495
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	5 cut(s)	60, 145, 305, 334, 475
Hin6I	GCGC	2 cut(s)	214, 493
HinP1I	GCGC	2 cut(s)	214, 493
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HinfI	GANTC	2 cut(s)	167, 458
HpaII	CCGG	3 cut(s)	42, 281, 365
HphI	GGTGA	1 cut(s)	435
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	3 cut(s)	247, 397, 530
Hpy188III	TCNNGA	2 cut(s)	281, 455
Hpy8I	GTNNAC	1 cut(s)	516
Hpy99I	CGWCG	5 cut(s)	155, 194, 224, 317, 376
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	2 cut(s)	273, 447
HpyCH4IV	ACGT	2 cut(s)	15, 341
HpyCH4V	TGCA	3 cut(s)	276, 305, 508
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 211, 237, 342, 374, 419, 492
HpyF3I	CTNAG	2 cut(s)	210, 258
HpySE526I	ACGT	2 cut(s)	15, 341
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	5 cut(s)	60, 145, 305, 334, 475
HspAI	GCGC	2 cut(s)	214, 493
Kpn2I	TCCGGA	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	262, 451
LmnI	GCTCC	4 cut(s)	124, 210, 236, 373
LweI	GCATC	1 cut(s)	52
MaeII	ACGT	2 cut(s)	15, 341
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	2 cut(s)	264, 453
MboI	GATC	2 cut(s)	262, 451
MboII	GAAGA	2 cut(s)	95, 427
MfeI	CAATTG	1 cut(s)	509
MhlI	GDGCHC	2 cut(s)	233, 338
MluCI	AATT	3 cut(s)	358, 463, 509
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	5 cut(s)	41, 149, 158, 219, 399
MroI	TCCGGA	1 cut(s)	280
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	3 cut(s)	42, 281, 365
MspR9I	CCNGG	2 cut(s)	347, 424
MunI	CAATTG	1 cut(s)	509
Mva1269I	GAATGC	2 cut(s)	276, 314
MvaI	CCWGG	2 cut(s)	347, 424
MwoI	GCNNNNNNNGC	7 cut(s)	96, 211, 237, 342, 374, 419, 492
NdeII	GATC	2 cut(s)	262, 451
NlaIII	CATG	5 cut(s)	60, 145, 305, 334, 475
NlaIV	GGNNCC	4 cut(s)	126, 206, 369, 405
NsbI	TGCGCA	1 cut(s)	494
NspI	RCATGY	1 cut(s)	60
OliI	CACNNNNGTG	1 cut(s)	57
PciI	ACATGT	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 483
PctI	GAATGC	2 cut(s)	276, 314
PfeI	GAWTC	1 cut(s)	458
PinAI	ACCGGT	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	161
PmaCI	CACGTG	1 cut(s)	342
PmlI	CACGTG	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	161
Ppu21I	YACGTR	1 cut(s)	342
PscI	ACATGT	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	345, 422
PspCI	CACGTG	1 cut(s)	342
PspGI	CCWGG	2 cut(s)	345, 422
PspN4I	GGNNCC	4 cut(s)	126, 206, 369, 405
PspPI	GGNCC	3 cut(s)	136, 145, 380
RsaI	GTAC	4 cut(s)	173, 186, 270, 476
RsaNI	GTAC	4 cut(s)	172, 185, 269, 475
RseI	CAYNNNNRTG	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	514
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	262, 451
Sau96I	GGNCC	3 cut(s)	136, 145, 380
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	347, 424
SduI	GDGCHC	2 cut(s)	233, 338
SetI	ASST	4 cut(s)	18, 177, 344, 507
SfaNI	GCATC	1 cut(s)	52
SinI	GGWCC	2 cut(s)	136, 380
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	3 cut(s)	358, 463, 509
SsiI	CCGC	3 cut(s)	88, 97, 202
StyD4I	CCNGG	2 cut(s)	345, 422
TaaI	ACNGT	2 cut(s)	273, 447
TaiI	ACGT	2 cut(s)	18, 344
TaqI	TCGA	4 cut(s)	150, 189, 315, 515
TasI	AATT	3 cut(s)	358, 463, 509
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TspDTI	ATGAA	2 cut(s)	96, 421
TspGWI	ACGGA	2 cut(s)	137, 360
VpaK11BI	GGWCC	2 cut(s)	136, 380
XapI	RAATTY	2 cut(s)	358, 463
XceI	RCATGY	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.